genome.fa.s5646.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005646.1 Hibiscus syriacus cultivar Beakdansim tig00013172_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80095

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
687--734	12	3.8	13	83	10	64	75	4	18	2	1.07
686--735	26	2.0	26	92	7	86	74	4	18	4	1.14
1777--1865	33	2.7	33	84	1	108	30	12	17	39	1.87
3071--3146	36	2.1	36	97	0	143	28	25	11	34	1.91
3161--3248	36	2.4	36	90	3	142	28	21	11	38	1.88
3071--3457	102	3.7	102	84	5	474	26	21	12	39	1.89
3337--3401	21	3.4	21	68	24	70	24	21	12	41	1.87
3261--3493	36	6.5	36	87	2	306	24	21	12	41	1.88
3373--3437	21	3.4	21	64	24	52	24	21	13	40	1.90
3789--3857	36	1.9	36	90	0	111	21	21	14	42	1.89
4660--4771	37	3.0	37	90	0	179	40	14	13	32	1.84
5247--5305	29	2.0	29	100	0	118	20	6	23	49	1.73
9838--9921	37	2.3	38	87	6	120	33	4	19	42	1.72
14429--14494	21	3.5	21	67	26	65	28	4	19	46	1.69
14422--14539	35	3.3	37	87	8	163	32	3	19	44	1.67
25575--25611	11	3.5	11	79	20	51	27	5	0	67	1.12
25569--25611	21	2.0	21	100	0	86	30	4	0	65	1.13
26231--26262	2	16.0	2	100	0	64	50	0	0	50	1.00
26609--26674	23	2.9	23	95	0	114	33	19	22	24	1.97
36893--37596	351	2.0	353	96	0	1304	44	12	16	27	1.83
38131--38388	36	7.2	36	76	12	230	43	2	6	46	1.43
38132--38339	72	2.8	74	86	5	260	42	2	7	47	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38325--38398	28	2.6	29	86	6	105	45	2	4	47	1.35
38492--38585	36	2.5	39	77	10	95	46	1	7	44	1.38
38588--38665	11	6.8	11	75	15	61	19	3	2	74	1.09
38590--38659	4	16.8	4	74	22	56	20	4	2	72	1.14
38595--38665	29	2.5	29	79	20	87	19	4	1	74	1.06
39941--39993	2	26.5	2	100	0	106	49	0	0	50	1.00
41114--41146	17	1.9	17	93	0	57	6	12	9	72	1.26
41766--41807	19	2.3	18	88	8	66	11	14	9	64	1.50
45145--45975	84	10.1	83	80	6	922	29	25	21	23	1.99
45120--45978	165	5.2	165	94	0	1425	29	25	21	23	1.99
46587--46846	36	7.2	36	76	12	232	43	2	6	46	1.43
46587--46818	72	3.1	73	84	6	270	43	2	6	46	1.43
46783--46879	28	3.2	30	82	10	108	46	3	5	45	1.41
46950--47047	36	2.6	37	79	6	108	43	1	8	46	1.40
47044--47118	11	6.5	11	75	14	62	18	4	2	74	1.09
47046--47115	4	16.8	4	74	22	56	20	4	2	72	1.14
47051--47118	29	2.4	28	81	18	86	19	4	1	75	1.06
48397--48467	2	35.5	2	100	0	142	49	0	0	50	1.00
49762--49798	2	18.5	2	100	0	74	48	0	0	51	1.00
53513--53555	21	2.0	21	86	0	59	30	27	25	16	1.97
53535--53686	68	2.3	67	86	3	198	26	26	27	18	1.98
54047--54106	30	2.0	31	86	3	86	36	6	21	35	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54326--54392	22	3.0	22	100	0	134	19	26	26	26	1.99
60431--60473	21	2.0	21	86	0	59	30	27	25	16	1.97
60453--60605	68	2.2	68	86	4	202	26	26	28	18	1.98
60565--60606	22	1.9	22	90	0	66	21	30	38	9	1.85
60964--61023	30	2.0	31	86	3	86	36	6	21	35	1.80
61243--61309	22	3.0	22	100	0	134	19	26	26	26	1.99
67973--68016	16	2.7	16	89	3	61	68	2	0	29	1.02
68375--68489	53	2.2	54	79	4	126	35	9	6	48	1.61
71691--71788	41	2.4	41	98	0	187	17	20	25	36	1.94
71716--71808	20	4.6	20	82	2	123	15	22	22	39	1.91
71716--71835	61	2.0	61	90	6	190	16	22	21	39	1.92
71760--71882	20	6.3	19	72	13	81	17	20	20	41	1.91
71780--71893	38	2.9	39	87	8	153	21	17	20	40	1.91
72478--72522	6	7.7	6	97	2	83	0	17	51	31	1.46
72616--72684	19	3.5	19	71	11	66	40	21	18	18	1.91
72617--72704	41	2.1	41	93	0	149	39	23	18	18	1.92
72634--72704	22	3.4	21	69	11	65	38	25	18	18	1.93
72771--72842	22	3.4	22	67	11	69	37	22	19	20	1.94
72753--72842	41	2.2	41	95	0	162	37	21	20	21	1.94
72767--72885	20	5.7	22	69	15	76	41	21	21	15	1.90
72753--72862	41	2.7	41	88	4	150	39	21	20	19	1.93
72834--72885	20	2.6	20	93	0	86	42	25	23	9	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76720--76754	14	2.4	14	90	4	52	71	5	22	0	1.07
79029--79164	53	2.5	55	77	7	159	41	13	5	40	1.66

Tables:   1

The End!