Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005648.1 Hibiscus syriacus cultivar Beakdansim tig00013188_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48651

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1595--1629
19
1.9
18
88
11
54
28
25
17
28
1.97
5763--5808
19
2.4
19
92
0
74
26
21
21
30
1.99
14617--14703
43
2.0
43
97
0
165
37
25
9
27
1.86
24133--24199
28
2.4
29
87
5
93
5
13
0
80
0.88
24151--24215
21
3.0
20
76
12
67
7
12
0
80
0.91
27694--27729
6
6.0
6
100
0
72
50
16
0
33
1.46
30123--30157
8
4.2
8
92
7
61
82
0
0
17
0.66
30108--30157
17
3.0
17
85
5
66
78
2
0
20
0.86
31764--32189
139
3.1
138
86
2
559
26
15
26
30
1.96
31923--32035
40
2.7
42
77
13
115
24
18
28
28
1.98
32184--32487
36
8.5
36
79
9
329
40
15
17
26
1.89
32184--32495
73
4.4
73
83
6
349
41
15
16
26
1.89
32370--32637
67
4.0
67
89
3
416
36
15
19
27
1.92
32581--32932
103
3.5
102
77
10
328
38
11
14
35
1.83
32957--33027
37
1.9
37
88
0
106
36
5
18
39
1.74
40150--40314
82
2.0
82
89
2
251
37
16
10
35
1.83
40859--40918
24
2.4
23
81
13
66
65
11
6
16
1.46
42368--42393
13
2.0
13
100
0
52
69
0
0
30
0.89
43881--43944
29
2.2
29
86
2
85
48
3
12
35
1.57
43901--43944
14
3.0
15
76
6
54
52
0
13
34
1.41
44047--44119
23
3.1
22
82
5
74
43
1
1
53
1.17
48323--48372
23
2.3
23
86
13
70
56
0
2
42
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48329--48396
23
3.0
22
81
12
66
54
1
1
42
1.18
48499--48542
14
3.1
14
77
6
52
34
13
0
52
1.41
48499--48554
29
1.9
29
88
0
85
32
14
3
50
1.60
48501--48562
29
2.2
29
85
2
81
35
12
3
48
1.58

Tables:   1

The End!