Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000565.1 Hibiscus syriacus cultivar Beakdansim tig00001104_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 165453
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.32
Found at i:3583 original size:20 final size:20
Alignment explanation
Indices: 3547--3584 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
3537 ATCATATTCT
**
3547 CTAGTAATCTTTTATTCCCA
1 CTAGTAATCTTACATTCCCA
3567 CTAGTAATCTTACATTCC
1 CTAGTAATCTTACATTCC
3585 GTGAACCAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.26, G:0.05, T:0.42
Consensus pattern (20 bp):
CTAGTAATCTTACATTCCCA
Found at i:9445 original size:21 final size:21
Alignment explanation
Indices: 9421--9465 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
9411 AGGTTTTAAA
9421 AAAAATAAAAGTTTAGA-TACT
1 AAAAATAAAAGTTTA-ATTACT
* *
9442 AAAATTAATAGTTTAATTACT
1 AAAAATAAAAGTTTAATTACT
9463 AAA
1 AAA
9466 CGTGTGATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 20 0.95
ACGTcount: A:0.56, C:0.04, G:0.07, T:0.33
Consensus pattern (21 bp):
AAAAATAAAAGTTTAATTACT
Found at i:9566 original size:2 final size:2
Alignment explanation
Indices: 9559--9631 Score: 139
Period size: 2 Copynumber: 37.0 Consensus size: 2
9549 AAAAGTGTAA
9559 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9601 AT AT AT AT AT AT AT AT AT AT AT -T AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9632 TATTATTGTC
Statistics
Matches: 70, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
1 1 0.01
2 69 0.99
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:9658 original size:5 final size:5
Alignment explanation
Indices: 9648--9702 Score: 74
Period size: 5 Copynumber: 11.0 Consensus size: 5
9638 TGTCATACCT
* * * *
9648 TAATA TAATA TAATA TAATA TAATA CAATA CAATA TACTA TAATA CAATA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
9698 TAATA
1 TAATA
9703 CAAAAGATAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
5 44 1.00
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (5 bp):
TAATA
Found at i:13736 original size:22 final size:23
Alignment explanation
Indices: 13709--13770 Score: 92
Period size: 22 Copynumber: 2.8 Consensus size: 23
13699 TTCTGCCAGC
13709 AAAACCA-TGCCCCTTTTATTGA
1 AAAACCATTGCCCCTTTTATTGA
*
13731 AAAACCATTGCCCC-ATTATTGA
1 AAAACCATTGCCCCTTTTATTGA
*
13753 AAAACAATTGCCCCTTTT
1 AAAACCATTGCCCCTTTT
13771 GTTTGACTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
22 27 0.77
23 8 0.23
ACGTcount: A:0.34, C:0.27, G:0.08, T:0.31
Consensus pattern (23 bp):
AAAACCATTGCCCCTTTTATTGA
Found at i:18331 original size:23 final size:23
Alignment explanation
Indices: 18288--18337 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
18278 CATGCCCTTT
*
18288 TTGTTGAAAAACTATTGCCCCCA
1 TTGTTGAAAAAATATTGCCCCCA
* *
18311 TTGTT-AAAAAATAATTTCCCCCT
1 TTGTTGAAAAAAT-ATTGCCCCCA
18334 TTGT
1 TTGT
18338 ATGACTTTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 6 0.26
23 17 0.74
ACGTcount: A:0.30, C:0.22, G:0.10, T:0.38
Consensus pattern (23 bp):
TTGTTGAAAAAATATTGCCCCCA
Found at i:30555 original size:24 final size:24
Alignment explanation
Indices: 30510--30555 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
30500 AAAAAAGGAT
* *
30510 AAAAATAAATTTAAAATTTTACTA
1 AAAAATAAAGTTAAAATATTACTA
30534 AAAAATAAAGTTACAAA-ATTAC
1 AAAAATAAAGTTA-AAATATTAC
30556 CTTCTAGCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 16 0.84
25 3 0.16
ACGTcount: A:0.61, C:0.07, G:0.02, T:0.30
Consensus pattern (24 bp):
AAAAATAAAGTTAAAATATTACTA
Found at i:31833 original size:32 final size:32
Alignment explanation
Indices: 31792--31856 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
31782 ATCATAAATT
31792 ACAAAATAAAGTCATTGCTGCTTATTGGGCCA
1 ACAAAATAAAGTCATTGCTGCTTATTGGGCCA
31824 ACAAAATAAAGTCATTGCTGCTTATTGGGCCA
1 ACAAAATAAAGTCATTGCTGCTTATTGGGCCA
31856 A
1 A
31857 GTATTTTTGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.28
Consensus pattern (32 bp):
ACAAAATAAAGTCATTGCTGCTTATTGGGCCA
Found at i:47917 original size:37 final size:37
Alignment explanation
Indices: 47876--47989 Score: 228
Period size: 37 Copynumber: 3.1 Consensus size: 37
47866 GGAAAGTCCA
47876 CACCGCGCTAAGAAGCGGCGTGTGTTGGTGCAGATGC
1 CACCGCGCTAAGAAGCGGCGTGTGTTGGTGCAGATGC
47913 CACCGCGCTAAGAAGCGGCGTGTGTTGGTGCAGATGC
1 CACCGCGCTAAGAAGCGGCGTGTGTTGGTGCAGATGC
47950 CACCGCGCTAAGAAGCGGCGTGTGTTGGTGCAGATGC
1 CACCGCGCTAAGAAGCGGCGTGTGTTGGTGCAGATGC
47987 CAC
1 CAC
47990 TCAAAATTGA
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 77 1.00
ACGTcount: A:0.19, C:0.25, G:0.37, T:0.18
Consensus pattern (37 bp):
CACCGCGCTAAGAAGCGGCGTGTGTTGGTGCAGATGC
Found at i:57243 original size:13 final size:13
Alignment explanation
Indices: 57225--57250 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
57215 CTTGGACTTT
57225 CAGAACTTGCTTC
1 CAGAACTTGCTTC
57238 CAGAACTTGCTTC
1 CAGAACTTGCTTC
57251 TTTCCTTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.31, G:0.15, T:0.31
Consensus pattern (13 bp):
CAGAACTTGCTTC
Found at i:62153 original size:79 final size:79
Alignment explanation
Indices: 62054--62292 Score: 361
Period size: 79 Copynumber: 3.0 Consensus size: 79
62044 CTTACGCAAG
62054 CTCTAAGGAGCTTATGCTTATAAAATGATCAATCTTTCACACTGGAACATGAAAACTTCTCGACA
1 CTCTAAGGAGCTTATGCTTATAAAATGATCAATCTTTCACACTGGAACATGAAAACTTCTCGACA
62119 CATGGGTACATGCA
66 CATGGGTACATGCA
* * * * * *
62133 CTCTAAGGTGCTTATGCTTATAAAATGAGCGATCTTTCACACTGGAACACGAAAACTTCTTGTCA
1 CTCTAAGGAGCTTATGCTTATAAAATGATCAATCTTTCACACTGGAACATGAAAACTTCTCGACA
62198 CATGGGTACATGCA
66 CATGGGTACATGCA
* * * *
62212 CTCTAAGGCGCTTAAGCTTATAAAATGATCAATCTCTCACACTGTGGAACATGAAAACTTCTGGA
1 CTCTAAGGAGCTTATGCTTATAAAATGATCAATCTTTCACAC--TGGAACATGAAAACTTCTCGA
*
62277 CACATGGATACATGCA
64 CACATGGGTACATGCA
62293 GTTCTAACCA
Statistics
Matches: 143, Mismatches: 15, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
79 110 0.77
81 33 0.23
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.28
Consensus pattern (79 bp):
CTCTAAGGAGCTTATGCTTATAAAATGATCAATCTTTCACACTGGAACATGAAAACTTCTCGACA
CATGGGTACATGCA
Found at i:72229 original size:21 final size:22
Alignment explanation
Indices: 72203--72243 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
72193 TACTAAGGGT
*
72203 AGTATTGATACCC-AGTATGAC
1 AGTATTCATACCCTAGTATGAC
72224 AGTATTCATACCCTAGTATG
1 AGTATTCATACCCTAGTATG
72244 CCAATATCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.32
Consensus pattern (22 bp):
AGTATTCATACCCTAGTATGAC
Found at i:72256 original size:22 final size:22
Alignment explanation
Indices: 72205--72256 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
72195 CTAAGGGTAG
*
72205 TATT-GATACCCAGTATGACAG
1 TATTCGATACCCAGTATGACAA
*
72226 TATTC-ATACCCTAGTATGCCAA
1 TATTCGATACCC-AGTATGACAA
72248 TA-TCGATAC
1 TATTCGATAC
72257 TCTAATTAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
21 12 0.46
22 14 0.54
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.31
Consensus pattern (22 bp):
TATTCGATACCCAGTATGACAA
Found at i:72822 original size:19 final size:19
Alignment explanation
Indices: 72798--72854 Score: 71
Period size: 19 Copynumber: 3.0 Consensus size: 19
72788 ACGATTTTGA
72798 AAAATGAGTTGCGATAGTT
1 AAAATGAGTTGCGATAGTT
* *
72817 AAAATGTGTTACGATAGTT
1 AAAATGAGTTGCGATAGTT
*
72836 AAAATGTA-TTGCGAGAGTT
1 AAAATG-AGTTGCGATAGTT
72855 TGAAAAACGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.37, C:0.05, G:0.25, T:0.33
Consensus pattern (19 bp):
AAAATGAGTTGCGATAGTT
Found at i:74200 original size:4 final size:4
Alignment explanation
Indices: 74193--77787 Score: 6618
Period size: 4 Copynumber: 903.5 Consensus size: 4
74183 AAGTCAATCA
74193 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
74241 ATAC ATAC ATAC ATAC ATAC ATAC ATCC ATCC ATAC ATCC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
74289 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
74337 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
74385 ATCC ATCC ATAC ATCC ATAC ATAC ATCC ATCC ATAC ATAC ATCC ATCC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
74433 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
74481 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
74529 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
74577 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
74625 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
74673 ATAC ATAC ATAC ATCC ATCC ATAC ATCC ATAC ATAC ATCC ATCC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
74721 ATAC ATCC ATCC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
74769 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
74817 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATCC ATCC ATAC ATAC ATCC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
74865 ATCC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
74913 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
74961 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
75009 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
75057 ATAC ATAC ATCC ATCC ATAC ATCC ATCC ATAC ATCC ATCC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
75105 ATCC ATCC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
75153 ATAC ATAC ATAC ATAC ATCC ATCC ATAC ATAC ATCC ATCC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
75201 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
75249 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
75297 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
75345 ATAC ATAC ATAC ATAC AT-C ATCC ATAC ATCC ATAC ATAC ATCC ATCC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
75392 ATAC ATAC ATCC AT-C ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
75439 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
75487 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATCC AT-C ATAC ATAC AT-C
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
75533 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
75581 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
75629 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATCC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
75677 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
75725 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
75773 ATAC TATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC -ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
75822 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
75870 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
75918 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
75966 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A-AC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
76013 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
76061 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATCC AT-- ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
76107 ATAC ATAC ATAC ATCC ATCC ATCC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
76155 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
76203 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
76251 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
76299 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
76347 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
76395 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
76443 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
76491 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
76539 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
76587 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
76635 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
76683 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
76731 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
76777 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
76825 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
76873 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
76921 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
76969 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
77017 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
77065 ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
77111 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
77159 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
77207 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
77255 ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
77301 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
77349 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
77397 ATCC ATCC ATAC AT-C ATAC ATAC ATAC --AC ATAC ATAC AT-C ATCC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
77441 AT-C ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
77488 ATAC AT-- ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
77534 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
77582 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
77630 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
77678 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
77726 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
77774 ATAC ATAC ATAC AT
1 ATAC ATAC ATAC AT
77788 CCATCCATCC
Statistics
Matches: 3520, Mismatches: 50, Indels: 42
0.97 0.01 0.01
Matches are distributed among these distances:
2 12 0.00
3 24 0.01
4 3480 0.99
5 4 0.00
ACGTcount: A:0.49, C:0.26, G:0.00, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:80647 original size:14 final size:14
Alignment explanation
Indices: 80628--80654 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
80618 AAACCATAAA
80628 AAACTAATAACAAC
1 AAACTAATAACAAC
80642 AAACTAATAACAA
1 AAACTAATAACAA
80655 GCTAATAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.67, C:0.19, G:0.00, T:0.15
Consensus pattern (14 bp):
AAACTAATAACAAC
Found at i:80674 original size:10 final size:11
Alignment explanation
Indices: 80639--80717 Score: 108
Period size: 11 Copynumber: 7.4 Consensus size: 11
80629 AACTAATAAC
80639 AACAAACTAAT
1 AACAAACTAAT
*
80650 AACAAGCTAAT
1 AACAAACTAAT
*
80661 AACAAAC-CAT
1 AACAAACTAAT
80671 AACAAACTAAT
1 AACAAACTAAT
*
80682 AACAAAC-CAT
1 AACAAACTAAT
80692 AACAAACTAAT
1 AACAAACTAAT
*
80703 AACAAATTAAT
1 AACAAACTAAT
80714 AACA
1 AACA
80718 CTCTAACAGA
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
10 18 0.31
11 41 0.69
ACGTcount: A:0.62, C:0.20, G:0.01, T:0.16
Consensus pattern (11 bp):
AACAAACTAAT
Found at i:80680 original size:21 final size:21
Alignment explanation
Indices: 80615--80708 Score: 125
Period size: 21 Copynumber: 4.3 Consensus size: 21
80605 CCAAGTAACC
*
80615 AACAAACCATAAAAAACTAAT
1 AACAAACCATAACAAACTAAT
* *
80636 AACAACAAACTAATAACAAGCTAAT
1 ---AACAAAC-CATAACAAACTAAT
80661 AACAAACCATAACAAACTAAT
1 AACAAACCATAACAAACTAAT
80682 AACAAACCATAACAAACTAAT
1 AACAAACCATAACAAACTAAT
80703 AACAAA
1 AACAAA
80709 TTAATAACAC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
21 39 0.61
22 7 0.11
24 7 0.11
25 11 0.17
ACGTcount: A:0.64, C:0.21, G:0.01, T:0.14
Consensus pattern (21 bp):
AACAAACCATAACAAACTAAT
Found at i:80680 original size:32 final size:32
Alignment explanation
Indices: 80615--80717 Score: 109
Period size: 32 Copynumber: 3.1 Consensus size: 32
80605 CCAAGTAACC
* *
80615 AACAAACCATAAAAAACTAATAACAACAAACTAAT
1 AACAAACAATAACAAACTAAT---AACAAACTAAT
* *
80650 AACAAGCTAATAACAAAC-CATAACAAACTAAT
1 AACAAAC-AATAACAAACTAATAACAAACTAAT
* *
80682 AACAAACCATAACAAACTAATAACAAATTAAT
1 AACAAACAATAACAAACTAATAACAAACTAAT
80714 AACA
1 AACA
80718 CTCTAACAGA
Statistics
Matches: 58, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
31 9 0.16
32 33 0.57
35 8 0.14
36 8 0.14
ACGTcount: A:0.63, C:0.20, G:0.01, T:0.16
Consensus pattern (32 bp):
AACAAACAATAACAAACTAATAACAAACTAAT
Found at i:83710 original size:17 final size:17
Alignment explanation
Indices: 83688--83721 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
83678 AGAAGGGAGA
83688 TATTATCTCAAATTCGG
1 TATTATCTCAAATTCGG
83705 TATTATCTCAAATTCGG
1 TATTATCTCAAATTCGG
83722 CAATTTCTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (17 bp):
TATTATCTCAAATTCGG
Found at i:98734 original size:13 final size:13
Alignment explanation
Indices: 98716--98754 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
98706 GGTATTTTCA
98716 TCCTCTTTATTTT
1 TCCTCTTTATTTT
*
98729 TCCTCTTTATTCT
1 TCCTCTTTATTTT
*
98742 TCTTC-TTATTTT
1 TCCTCTTTATTTT
98754 T
1 T
98755 TGGTATTTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
12 7 0.30
13 16 0.70
ACGTcount: A:0.08, C:0.23, G:0.00, T:0.69
Consensus pattern (13 bp):
TCCTCTTTATTTT
Found at i:120903 original size:23 final size:23
Alignment explanation
Indices: 120877--120924 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
120867 ATAAAGTACA
*
120877 ATAACATACTAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
** *
120900 ATAATGTAATAGGTAGTGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
120923 AT
1 AT
120925 TACCTAATTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.35
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:120932 original size:23 final size:23
Alignment explanation
Indices: 120877--120932 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 23
120867 ATAAAGTACA
* *
120877 ATAACATACTAGGTAGCGCTTAT
1 ATAACCTAATAGGTAGCGCTTAT
** *
120900 ATAATGTAATAGGTAGTGCTTAT
1 ATAACCTAATAGGTAGCGCTTAT
*
120923 ATTACCTAAT
1 ATAACCTAAT
120933 TTATAAGTAA
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (23 bp):
ATAACCTAATAGGTAGCGCTTAT
Found at i:121373 original size:23 final size:23
Alignment explanation
Indices: 121347--121409 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
121337 ATATAACCAC
121347 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
121370 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
121393 TACCTATTACATCATAT
1 TACCTATTACATTATAT
121410 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:121803 original size:23 final size:23
Alignment explanation
Indices: 121777--121839 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
121767 ATATAACAAC
121777 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
121800 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
121823 TACCTATTACATCATAT
1 TACCTATTACATTATAT
121840 TTTACCTATT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:121817 original size:430 final size:430
Alignment explanation
Indices: 120997--122047 Score: 1915
Period size: 430 Copynumber: 2.5 Consensus size: 430
120987 TTATAATATG
*
120997 TTGAAAGTGTCCATAATTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTT
*
121062 TCAATTTTTTGAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCAC
66 TCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCAC
* *
121127 AAAAAATTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAA-TA-A-T
131 AAAAAATTATTTGATTTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAACAACATT
121189 -AATATATATCGTAACGTAAAATAAATCATTAGACGCCTATAATTACTAAATTAAAATCTTAAAA
196 AAATATATATCGTAACGTAAAATAAATCATTAGACGCCTATAATTACTAAATTAAAATCTTAAAA
*
121253 CTCACTCAAAATATAACCTTAAATTAATGTTTTCAACAGTGAAAAAAGTATGGACACTTTTATAA
261 CTCACTCAAAAGATAACCTTAAATTAATGTTTTCAACAGTGAAAAAAGTATGGACACTTTTATAA
*
121318 AAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATTACATT
326 AAAGGATAGACACTTTACAATATAACAACTACCTATTACATTATATAAACGATACCTATTACATT
121383 ATATAAGCGCTACCTATTACATCATATTTTTACCTATTATA
391 ATATAAGCGCTACCTATTACATCATA-TTTTACCTATTATA
*
121424 TTTAAAGTGTCCATACTTTTTAT-AAAAGGATCGATACTTCTTTT-AAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTT
121487 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
66 TCAA-TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
121552 CAAAAAATTATTTGATTTTTTGATATTTTAT-AAA-ATTATTTAGAATTTTTAATTTAACAACAT
130 CAAAAAATTATTTGATTTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAACAACAT
121615 TAAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAAAATCTTA
195 TAAATATATATCGTAACGT--AAAATAAATCATTAGACGCCTATAATTACTAAATTAAAATCTTA
*
121680 AAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTA
258 AAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCAACAGTGAAAAAAGTATGGACACTTTTA
121745 TAAAAAGGATAGACACTTTACAATATAACAACTACCTATTACATTATATAAACGATACCTATTAC
323 TAAAAAGGATAGACACTTTACAATATAACAACTACCTATTACATTATATAAACGATACCTATTAC
121810 ATTATATAAGCGCTACCTATTACATCATATTTTACCTATTATA
388 ATTATATAAGCGCTACCTATTACATCATATTTTACCTATTATA
*
121853 TTGAAAGTGTCCATACCTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTT
121918 TCAATTTTTTTAATAGTGTTTCATGTTTT-CACCTACAATATTAATTTAATAATTTCATTTGCAC
66 TCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCAC
121982 AAAAAATTATTTGATTTTTTGATATTTTATAAAATATTATTTAGAA-TTTTAATTTAACAACATT
131 AAAAAATTATTTGATTTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAACAACATT
122046 AA
196 AA
122048 CCAAAGATAA
Statistics
Matches: 603, Mismatches: 10, Indels: 19
0.95 0.02 0.03
Matches are distributed among these distances:
424 23 0.04
425 27 0.04
426 111 0.18
427 22 0.04
428 17 0.03
429 100 0.17
430 269 0.45
431 34 0.06
ACGTcount: A:0.39, C:0.12, G:0.08, T:0.41
Consensus pattern (430 bp):
TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTT
TCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCAC
AAAAAATTATTTGATTTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAACAACATT
AAATATATATCGTAACGTAAAATAAATCATTAGACGCCTATAATTACTAAATTAAAATCTTAAAA
CTCACTCAAAAGATAACCTTAAATTAATGTTTTCAACAGTGAAAAAAGTATGGACACTTTTATAA
AAAGGATAGACACTTTACAATATAACAACTACCTATTACATTATATAAACGATACCTATTACATT
ATATAAGCGCTACCTATTACATCATATTTTACCTATTATA
Found at i:122308 original size:39 final size:39
Alignment explanation
Indices: 122254--122339 Score: 145
Period size: 39 Copynumber: 2.2 Consensus size: 39
122244 TCAGTTGTAG
*
122254 ATTTTGATTTCCTTTTGCTTGGCATCATATGAGATTTGA
1 ATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTGA
* *
122293 ATTTTGATTTCCTTTTGCTTGGCACCATATGAGCTTTGG
1 ATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTGA
122332 ATTTTGAT
1 ATTTTGAT
122340 GAGCATCGGA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.19, C:0.14, G:0.19, T:0.49
Consensus pattern (39 bp):
ATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTGA
Found at i:122618 original size:18 final size:18
Alignment explanation
Indices: 122595--122631 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
122585 CGAAATATAT
122595 ATTGAAATTCAAACTCAA
1 ATTGAAATTCAAACTCAA
* *
122613 ATTGAAATTTAAATTCAA
1 ATTGAAATTCAAACTCAA
122631 A
1 A
122632 CTCCAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.32
Consensus pattern (18 bp):
ATTGAAATTCAAACTCAA
Found at i:123084 original size:23 final size:23
Alignment explanation
Indices: 123057--123110 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
123047 ACTTTACAAT
* *
123057 ATTATATAAGCGCTACCTATTAC
1 ATTATATAAACGATACCTATTAC
123080 ATTATATAAACGATACCTATTAC
1 ATTATATAAACGATACCTATTAC
123103 ATTATATA
1 ATTATATA
123111 CTTGTAGTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.41, C:0.17, G:0.06, T:0.37
Consensus pattern (23 bp):
ATTATATAAACGATACCTATTAC
Found at i:126314 original size:182 final size:183
Alignment explanation
Indices: 125573--126738 Score: 2028
Period size: 182 Copynumber: 6.4 Consensus size: 183
125563 CGACACATTT
*
125573 TAGGTTGTAGACATATTCGCGC--AAAACCGGTATA-TTATACCGGTTATATTGCAAATTTACCT
1 TAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTTATATTGCAAATTTACCT
125635 ATTTTATTATAATTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACA-
66 ATTTTATTATAATTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACAT
125699 TTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATA
131 TTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATA
* * * * *
125752 TAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTTATACCTGTTATATTACAAAATTATCT
1 TAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTTATATTGCAAATTTACCT
**
125817 ATTACATTATAATTATGGGTTCCGATGTGTAAA--TCGACACTTTTTTAAATCGTATCGACACAT
66 ATTTTATTATAATTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACAT
125880 TTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATA
131 TTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATA
* * ** * *
125933 TAGGTTGTAGACCTATTCGCTCATACAACCGGTATATTTATACCTTTTATATTACAAAATTA--T
1 TAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTTATATTGCAAATTTACCT
**
125996 ATTACATTATAATTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACAT
66 ATTTTATTATAATTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACAT
126061 TTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATA
131 TTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATA
126114 TAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTTATATTGCAAATTTACCT
1 TAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTTATATTGCAAATTTACCT
126179 ATTTTATTATAATTATGGGTTCCGATGTGTAAATGTCGACAC-TTTTTAAATCGTATCGACACAT
66 ATTTTATTATAATTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACAT
126243 TTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATA
131 TTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATA
* * * * * *
126296 TAGGTTGTAGACCTATTCGCTCATACAACCGGTATATTTATACCTGTTATATTACAAAATTATCT
1 TAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTTATATTGCAAATTTACCT
** *
126361 ATTACATTATAATTACGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACAT
66 ATTTTATTATAATTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACAT
*
126426 TTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGTTGATA
131 TTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATA
126479 TAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTTATATTGCAAATTTACCT
1 TAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTTATATTGCAAATTTACCT
126544 A-TTTATTATAATTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACAT
66 ATTTTATTATAATTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACAT
126608 TTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATA
131 TTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATA
126661 TAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTTATATTGCAAATTTACCT
1 TAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTTATATTGCAAATTTACCT
126726 ATTTTATTATAAT
66 ATTTTATTATAAT
126739 ATGTTGAAAG
Statistics
Matches: 939, Mismatches: 38, Indels: 16
0.95 0.04 0.02
Matches are distributed among these distances:
179 54 0.06
180 29 0.03
181 264 0.28
182 406 0.43
183 186 0.20
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.36
Consensus pattern (183 bp):
TAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTTATATTGCAAATTTACCT
ATTTTATTATAATTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACAT
TTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATA
Found at i:126498 original size:365 final size:366
Alignment explanation
Indices: 125573--126738 Score: 2037
Period size: 365 Copynumber: 3.2 Consensus size: 366
125563 CGACACATTT
* * *
125573 TAGGTTGTAGACATATTCGCGCA-A-AACCGGTATA-TTATACCGGTTATATTGCAAATTTACCT
1 TAGGTTGTAGACCTATTCGCGCATACAACCGGTATATTTATACCGGTTATATTACAAAATTACCT
**
125635 ATTTTATTATAATTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACA-
66 ATTACATTATAATTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACAT
125699 TTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGAC
131 TTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGAC
* * * * * **
125764 CTATTCGCTCATAAAACCGGTATATTTATACCTGTTATATTACAAAATTATCTATTACATTATAA
196 CTATTCGCGCATAAAACCGGTATATTTATACCGGTTATATTGCAAATTTACCTATTTTATTATAA
125829 TTATGGGTTCCGATGTGTAAA--TCGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAAT
261 TTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAAT
125892 ATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATA
326 ATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATA
* **
125933 TAGGTTGTAGACCTATTCGCTCATACAACCGGTATATTTATACCTTTTATATTACAAAATTA--T
1 TAGGTTGTAGACCTATTCGCGCATACAACCGGTATATTTATACCGGTTATATTACAAAATTACCT
125996 ATTACATTATAATTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACAT
66 ATTACATTATAATTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACAT
126061 TTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGAC
131 TTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGAC
126126 CTATTCGCGCATAAAACCGGTATATTTATACCGGTTATATTGCAAATTTACCTATTTTATTATAA
196 CTATTCGCGCATAAAACCGGTATATTTATACCGGTTATATTGCAAATTTACCTATTTTATTATAA
126191 TTATGGGTTCCGATGTGTAAATGTCGACAC-TTTTTAAATCGTATCGACACATTTTTCTTCCAAT
261 TTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAAT
126255 ATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATA
326 ATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATA
* * *
126296 TAGGTTGTAGACCTATTCGCTCATACAACCGGTATATTTATACCTGTTATATTACAAAATTATCT
1 TAGGTTGTAGACCTATTCGCGCATACAACCGGTATATTTATACCGGTTATATTACAAAATTACCT
*
126361 ATTACATTATAATTACGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACAT
66 ATTACATTATAATTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACAT
*
126426 TTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGTTGATATAGGTTGTAGAC
131 TTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGAC
126491 CTATTCGCGCATAAAACCGGTATATTTATACCGGTTATATTGCAAATTTACCTA-TTTATTATAA
196 CTATTCGCGCATAAAACCGGTATATTTATACCGGTTATATTGCAAATTTACCTATTTTATTATAA
126555 TTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAAT
261 TTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAAT
126620 ATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATA
326 ATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATA
* * *
126661 TAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTTATATTGCAAATTTACCT
1 TAGGTTGTAGACCTATTCGCGCATACAACCGGTATATTTATACCGGTTATATTACAAAATTACCT
**
126726 ATTTTATTATAAT
66 ATTACATTATAAT
126739 ATGTTGAAAG
Statistics
Matches: 771, Mismatches: 26, Indels: 13
0.95 0.03 0.02
Matches are distributed among these distances:
360 21 0.03
361 64 0.08
362 154 0.20
363 157 0.20
364 47 0.06
365 328 0.43
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.36
Consensus pattern (366 bp):
TAGGTTGTAGACCTATTCGCGCATACAACCGGTATATTTATACCGGTTATATTACAAAATTACCT
ATTACATTATAATTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACAT
TTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGAC
CTATTCGCGCATAAAACCGGTATATTTATACCGGTTATATTGCAAATTTACCTATTTTATTATAA
TTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAAT
ATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATA
Found at i:128208 original size:3 final size:3
Alignment explanation
Indices: 128200--128274 Score: 60
Period size: 3 Copynumber: 25.0 Consensus size: 3
128190 TACTGTTTGG
* * * ** * *
128200 ATC ATC ATC TTC ATC ATC ATC ATC GTC ATC ATC TTC ATC GCC AGC TTC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
* * *
128248 ATC GTC ATC ATC ATC GTC ATC TTC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC
128275 GTCAGCTTCA
Statistics
Matches: 53, Mismatches: 19, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.23, C:0.35, G:0.07, T:0.36
Consensus pattern (3 bp):
ATC
Found at i:128217 original size:12 final size:12
Alignment explanation
Indices: 128204--128286 Score: 94
Period size: 12 Copynumber: 6.9 Consensus size: 12
128194 GTTTGGATCA
*
128204 TCATCTTCATCA
1 TCATCTTCATCG
* * *
128216 TCATCATCGTCA
1 TCATCTTCATCG
128228 TCATCTTCATCG
1 TCATCTTCATCG
* *
128240 CCAGCTTCATCG
1 TCATCTTCATCG
*
128252 TCATCATCATCG
1 TCATCTTCATCG
128264 TCATCTTCATCG
1 TCATCTTCATCG
*
128276 TCAGCTTCATC
1 TCATCTTCATC
128287 TTCTGCGACC
Statistics
Matches: 59, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 59 1.00
ACGTcount: A:0.20, C:0.35, G:0.08, T:0.36
Consensus pattern (12 bp):
TCATCTTCATCG
Found at i:128248 original size:36 final size:36
Alignment explanation
Indices: 128208--128286 Score: 122
Period size: 36 Copynumber: 2.2 Consensus size: 36
128198 GGATCATCAT
*
128208 CTTCATCATCATCATCGTCATCATCTTCATCGCCAG
1 CTTCATCATCATCATCATCATCATCTTCATCGCCAG
* * *
128244 CTTCATCGTCATCATCATCGTCATCTTCATCGTCAG
1 CTTCATCATCATCATCATCATCATCTTCATCGCCAG
128280 CTTCATC
1 CTTCATC
128287 TTCTGCGACC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.20, C:0.35, G:0.09, T:0.35
Consensus pattern (36 bp):
CTTCATCATCATCATCATCATCATCTTCATCGCCAG
Found at i:128287 original size:18 final size:18
Alignment explanation
Indices: 128228--128289 Score: 79
Period size: 18 Copynumber: 3.4 Consensus size: 18
128218 ATCATCGTCA
*
128228 TCATCTTCATCGCCAGCT
1 TCATCTTCATCGTCAGCT
* * * *
128246 TCATCGTCATCATCATCG
1 TCATCTTCATCGTCAGCT
128264 TCATCTTCATCGTCAGCT
1 TCATCTTCATCGTCAGCT
128282 TCATCTTC
1 TCATCTTC
128290 TGCGACCGCT
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.18, C:0.35, G:0.10, T:0.37
Consensus pattern (18 bp):
TCATCTTCATCGTCAGCT
Found at i:128289 original size:6 final size:6
Alignment explanation
Indices: 128204--128289 Score: 64
Period size: 6 Copynumber: 14.3 Consensus size: 6
128194 GTTTGGATCA
* * * * * * * *
128204 TCATCT TCATCA TCATCA TCGTCA TCATCT TCATCG CCAGCT TCATCG
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT
* * * *
128252 TCATCA TCATCG TCATCT TCATCG TCAGCT TCATCT TC
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TC
128290 TGCGACCGCT
Statistics
Matches: 62, Mismatches: 18, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
6 62 1.00
ACGTcount: A:0.20, C:0.35, G:0.08, T:0.37
Consensus pattern (6 bp):
TCATCT
Found at i:130451 original size:389 final size:391
Alignment explanation
Indices: 129730--130812 Score: 1989
Period size: 389 Copynumber: 2.8 Consensus size: 391
129720 ACACTTGATA
129730 TTTAAATTAGTATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCACAT-A
1 TTTAAATTAGTATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCACATAA
129794 AACCGGTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATG
66 AACCGGTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATG
*
129859 ATTTTGGGATCGACACTTTTTATATACGGATCGACACTTTATGGTGCACCCTGTTTTCCATTCAT
131 ATTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTGCACCCTGTTTTCCATTCAT
* *
129924 AT-T-TAAATTAGTATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCACA
196 -TCTGGAAA-TAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCACA
129987 TAAAACCGGTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCG
259 TAAAACCGGTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCG
130052 ATGATTTGGGATCGACACTTTTTATATATGGATCGACACTTTAT-GGTGCACCCTGTTTTCCATT
324 ATGATTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATT
130116 CAT
389 CAT
130119 TTTAAATTAGTATCGACACAAACTATATTAGTGTCGACACA-TATTTAGACATATTCTCACATAA
1 TTTAAATTAGTATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCACATAA
*
130183 AACCGGTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATAATTTTGGGTTCGATG
66 AACCGGTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATG
130248 ATTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTGCACCCTGTTTTCCATTCAT
131 ATTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTGCACCCTGTTTTCCATTCAT
130313 TCTGGAAATAATATCGACACAAACTATA-TAGTGTCGACACATTATTTAGACATATTCTCACATA
196 TCTGGAAATAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCACATA
130377 AAACCGGTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGAT
261 AAACCGGTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGAT
130442 GATTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTC
326 GA-TTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTC
130507 AT
390 AT
* * *
130509 TCTGGAAATAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCACAT
1 T-T-TAAATTAGTATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCACAT
130574 AAAACCGGTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGA
64 AAAACCGGTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGA
130639 TGATTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTGCACCCTGTTTTCCATTC
129 TGATTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTGCACCCTGTTTTCCATTC
*
130704 ATTCTGGAAAAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCA
194 ATTCTGG--AAATAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCA
130769 CATAAAACCGGTATAATTGTACCGGTTAGATTGAAAAATTACAT
257 CATAAAACCGGTATAATTGTACCGGTTAGATTGAAAAATTACAT
130813 CCTTTTGGCC
Statistics
Matches: 674, Mismatches: 9, Indels: 15
0.97 0.01 0.02
Matches are distributed among these distances:
388 125 0.19
389 230 0.34
390 27 0.04
391 1 0.00
392 36 0.05
393 157 0.23
395 22 0.03
396 76 0.11
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (391 bp):
TTTAAATTAGTATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCACATAA
AACCGGTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATG
ATTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTGCACCCTGTTTTCCATTCAT
TCTGGAAATAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCACATA
AAACCGGTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGAT
GATTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCA
T
Found at i:130622 original size:198 final size:197
Alignment explanation
Indices: 129740--130812 Score: 1975
Period size: 195 Copynumber: 5.5 Consensus size: 197
129730 TTTAAATTAG
129740 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCACAT-AAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCACATAAAACCGGTATA
129804 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
* *
129869 CGACACTTTTTATATACGGATCGACACTTTATGGTGCACCCTGTTTTCCATTCATAT-T-TAAAT
131 CGACACTTTTTATATATGGATCGACACTTTATGGTGCACCCTGTTTTCCATTCAT-TCTGGAAAT
* *
129932 TAG
195 AAA
129935 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCACATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCACATAAAACCGGTATA
130000 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGA-TTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
* *
130064 CGACACTTTTTATATATGGATCGACACTTTATGGTGCACCCTGTTTTCCATTCATT-T-TAAATT
131 CGACACTTTTTATATATGGATCGACACTTTATGGTGCACCCTGTTTTCCATTCATTCTGGAAATA
*
130127 AG
196 AA
130129 TATCGACACAAACTATATTAGTGTCGACACA-TATTTAGACATATTCTCACATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCACATAAAACCGGTATA
*
130193 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATAATTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
130258 CGACACTTTTTATATATGGATCGACACTTTATGGTGCACCCTGTTTTCCATTCATTCTGGAAAT-
131 CGACACTTTTTATATATGGATCGACACTTTATGGTGCACCCTGTTTTCCATTCATTCTGGAAATA
130322 AA
196 AA
130324 TATCGACACAAACTATA-TAGTGTCGACACATTATTTAGACATATTCTCACATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCACATAAAACCGGTATA
130388 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
130453 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAT
131 CGACACTTTTTATATATGGATCGACACTTTAT-GGTGCACCCTGTTTTCCATTCATTCTGGAAAT
130518 AAA
195 AAA
130521 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCACATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCACATAAAACCGGTATA
130586 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
130651 CGACACTTTTTATATATGGATCGACACTTTATGGTGCACCCTGTTTTCCATTCATTCTGGAAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGTGCACCCTGTTTTCCATTCATTCTGG-AAAT
130716 AAA
195 AAA
130719 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCACATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCACATAAAACCGGTATA
130784 ATTGTACCGGTTAGATTGAAAAATTACAT
66 ATTGTACCGGTTAGATTGAAAAATTACAT
130813 CCTTTTGGCC
Statistics
Matches: 863, Mismatches: 6, Indels: 15
0.98 0.01 0.02
Matches are distributed among these distances:
193 88 0.10
194 118 0.14
195 263 0.30
196 103 0.12
197 47 0.05
198 244 0.28
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (197 bp):
TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCACATAAAACCGGTATA
ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
CGACACTTTTTATATATGGATCGACACTTTATGGTGCACCCTGTTTTCCATTCATTCTGGAAATA
AA
Found at i:132800 original size:32 final size:33
Alignment explanation
Indices: 132764--132828 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
132754 CATCTTAATA
*
132764 TCACCCCTTAACACC-CAACTTCTTTCACCACT
1 TCACCCCTCAACACCTCAACTTCTTTCACCACT
*
132796 TCACCCCTCAACACCTCTACTTCTTTCACCACT
1 TCACCCCTCAACACCTCAACTTCTTTCACCACT
132829 CCATCTATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 14 0.47
33 16 0.53
ACGTcount: A:0.23, C:0.48, G:0.00, T:0.29
Consensus pattern (33 bp):
TCACCCCTCAACACCTCAACTTCTTTCACCACT
Found at i:132902 original size:21 final size:21
Alignment explanation
Indices: 132862--132926 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
132852 CCCCTTATGC
* *
132862 CTCTCGAGTGTATCTTCGACT
1 CTCTCGAGTTTCTCTTCGACT
*
132883 CTCTCGAGTTTCTCTACGACT
1 CTCTCGAGTTTCTCTTCGACT
* *
132904 -TGATCAAGTTTCTCTTCGACT
1 CT-CTCGAGTTTCTCTTCGACT
132925 CT
1 CT
132927 TGATTGTCTT
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
20 1 0.03
21 34 0.94
22 1 0.03
ACGTcount: A:0.15, C:0.29, G:0.15, T:0.40
Consensus pattern (21 bp):
CTCTCGAGTTTCTCTTCGACT
Found at i:135207 original size:19 final size:19
Alignment explanation
Indices: 135152--135198 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 19
135142 ATCCGGTATC
135152 ATTTTACCGGTTTTATCAT
1 ATTTTACCGGTTTTATCAT
135171 -TTTGATACCGGTTTTATCAT
1 ATTT--TACCGGTTTTATCAT
135191 ATTTTACC
1 ATTTTACC
135199 TGTTATATCG
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
18 3 0.12
19 4 0.16
20 15 0.60
21 3 0.12
ACGTcount: A:0.21, C:0.17, G:0.11, T:0.51
Consensus pattern (19 bp):
ATTTTACCGGTTTTATCAT
Found at i:135345 original size:20 final size:20
Alignment explanation
Indices: 135319--135364 Score: 76
Period size: 20 Copynumber: 2.3 Consensus size: 20
135309 CACTTTTAAA
135319 TTTACCGGTTTTATCAT-TT
1 TTTACCGGTTTTATCATATT
135338 TGTTACCGGTTTTATCATATT
1 T-TTACCGGTTTTATCATATT
135359 TTTACC
1 TTTACC
135365 TGGTATACGT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.17, C:0.17, G:0.11, T:0.54
Consensus pattern (20 bp):
TTTACCGGTTTTATCATATT
Found at i:136212 original size:26 final size:26
Alignment explanation
Indices: 136183--136235 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
136173 CCCCTCTTAC
136183 TAATAGGAATCCTTACTTCTTTTCTG
1 TAATAGGAATCCTTACTTCTTTTCTG
136209 TAATAGGAATCCTTACTTCTTTTCTG
1 TAATAGGAATCCTTACTTCTTTTCTG
136235 T
1 T
136236 TTGGATGGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.23, C:0.19, G:0.11, T:0.47
Consensus pattern (26 bp):
TAATAGGAATCCTTACTTCTTTTCTG
Found at i:137205 original size:18 final size:18
Alignment explanation
Indices: 137172--137223 Score: 72
Period size: 18 Copynumber: 3.0 Consensus size: 18
137162 GGAATGTTTA
**
137172 TGAAGGAATTAAAATCTG
1 TGAAGGAATTGGAATCTG
137190 TGAAGGAATTGGAATCTG
1 TGAAGGAATTGGAATCTG
137208 T--AGGAATTGGAATCTG
1 TGAAGGAATTGGAATCTG
137224 AATCTGAAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
16 15 0.47
18 17 0.53
ACGTcount: A:0.37, C:0.06, G:0.29, T:0.29
Consensus pattern (18 bp):
TGAAGGAATTGGAATCTG
Found at i:137214 original size:16 final size:16
Alignment explanation
Indices: 137193--137223 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
137183 AAATCTGTGA
137193 AGGAATTGGAATCTGT
1 AGGAATTGGAATCTGT
137209 AGGAATTGGAATCTG
1 AGGAATTGGAATCTG
137224 AATCTGAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.06, G:0.32, T:0.29
Consensus pattern (16 bp):
AGGAATTGGAATCTGT
Found at i:137935 original size:62 final size:62
Alignment explanation
Indices: 137770--137969 Score: 296
Period size: 62 Copynumber: 3.2 Consensus size: 62
137760 CCTAAACCCG
***
137770 AACCCGACCCGACCCGAATATCACACTTTAAAAAACCTGGCCGACCCGAATATCACACTTTAAAA
1 AACCCGACCCGACCCGAATATCACAC-TTAAAAAA--AAACCGACCCGAATATCACAC-TTAAAA
137835 A
62 A
* *
137836 AACCCGACCCGACCCGAATATCACACTT-AAAATAAACCGACCCGAATATTACACTTAAAAA
1 AACCCGACCCGACCCGAATATCACACTTAAAAAAAAACCGACCCGAATATCACACTTAAAAA
*
137897 AACCTGACCCGACCCGAATATCACACTTAAAAAAAAACCGACCCGAATATCACACTTAAAAA
1 AACCCGACCCGACCCGAATATCACACTTAAAAAAAAACCGACCCGAATATCACACTTAAAAA
137959 AA-CCGACCCGA
1 AACCCGACCCGA
137970 ATATCACATT
Statistics
Matches: 124, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
61 42 0.34
62 50 0.40
64 4 0.03
65 2 0.02
66 26 0.21
ACGTcount: A:0.43, C:0.33, G:0.10, T:0.15
Consensus pattern (62 bp):
AACCCGACCCGACCCGAATATCACACTTAAAAAAAAACCGACCCGAATATCACACTTAAAAA
Found at i:138003 original size:33 final size:32
Alignment explanation
Indices: 137770--138003 Score: 258
Period size: 33 Copynumber: 7.5 Consensus size: 32
137760 CCTAAACCCG
*
137770 AACCCGACCCGACCCGAATATCACACTTTAAAA
1 AACCCGA-CCGACCCGAATATCACACTTAAAAA
* *
137803 AACCTGGCCGACCCGAATATCACACTTTAAAAA
1 AACCCGACCGACCCGAATATCACAC-TTAAAAA
*
137836 AACCCGACCCGACCCGAATATCACACTTAAAAT
1 AACCCGA-CCGACCCGAATATCACACTTAAAAA
*
137869 AA----ACCGACCCGAATATTACACTTAAAAA
1 AACCCGACCGACCCGAATATCACACTTAAAAA
*
137897 AACCTGACCCGACCCGAATATCACACTTAAAAA
1 AACCCGA-CCGACCCGAATATCACACTTAAAAA
*
137930 AA---AACCGACCCGAATATCACACTT-AAAA
1 AACCCGACCGACCCGAATATCACACTTAAAAA
*
137958 AA----ACCGACCCGAATATCACATTTAAAAA
1 AACCCGACCGACCCGAATATCACACTTAAAAA
*
137986 AACCCGACCTGAACCGAA
1 AACCCGACC-GACCCGAA
138004 CCTGATTTTT
Statistics
Matches: 176, Mismatches: 12, Indels: 26
0.82 0.06 0.12
Matches are distributed among these distances:
27 20 0.11
28 37 0.21
29 21 0.12
30 1 0.01
32 22 0.12
33 57 0.32
34 18 0.10
ACGTcount: A:0.44, C:0.32, G:0.09, T:0.15
Consensus pattern (32 bp):
AACCCGACCGACCCGAATATCACACTTAAAAA
Found at i:138022 original size:89 final size:90
Alignment explanation
Indices: 137778--138004 Score: 287
Period size: 89 Copynumber: 2.5 Consensus size: 90
137768 CGAACCCGAC
* * * * *
137778 CCGACCCGAATATCACACTTTAAAAAACCTG-GCCGACCCGAATATCACACTTTAAAAAAACCCG
1 CCGACCCGAATATCACACTTAAAAAAACCCGACCCGAACCGAACATCACAC-TTAAAAAAA----
*
137842 ACCCGACCCGAATATCACACTTAAAATAAA
61 AACCGACCCGAATATCACACTTAAAATAAA
* * * *
137872 CCGACCCGAATATTACACTTAAAAAAACCTGACCCGACCCGAATATCACACTTAAAAAAAAACCG
1 CCGACCCGAATATCACACTTAAAAAAACCCGACCCGAACCGAACATCACACTTAAAAAAAAACCG
137937 ACCCGAATATCACACTTAAAA-AAA
66 ACCCGAATATCACACTTAAAATAAA
* *
137961 CCGACCCGAATATCACATTTAAAAAAACCCGACCTGAACCGAAC
1 CCGACCCGAATATCACACTTAAAAAAACCCGACCCGAACCGAAC
138005 CTGATTTTTT
Statistics
Matches: 122, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
89 41 0.34
90 25 0.20
94 38 0.31
95 18 0.15
ACGTcount: A:0.44, C:0.31, G:0.09, T:0.16
Consensus pattern (90 bp):
CCGACCCGAATATCACACTTAAAAAAACCCGACCCGAACCGAACATCACACTTAAAAAAAAACCG
ACCCGAATATCACACTTAAAATAAA
Found at i:141917 original size:24 final size:24
Alignment explanation
Indices: 141850--141918 Score: 58
Period size: 24 Copynumber: 3.1 Consensus size: 24
141840 TGTCTAACTA
* *
141850 TTTATATATATTTTGAATTAAATA
1 TTTATATATATTTTAAATTAAATT
** *
141874 TTTATCGATA----AAATT-TATT
1 TTTATATATATTTTAAATTAAATT
141893 TTTATATATATTTTAAATTAAATT
1 TTTATATATATTTTAAATTAAATT
141917 TT
1 TT
141919 ACTGTTTAAA
Statistics
Matches: 32, Mismatches: 8, Indels: 10
0.64 0.16 0.20
Matches are distributed among these distances:
19 10 0.31
20 4 0.12
23 5 0.16
24 13 0.41
ACGTcount: A:0.39, C:0.01, G:0.03, T:0.57
Consensus pattern (24 bp):
TTTATATATATTTTAAATTAAATT
Found at i:142254 original size:18 final size:20
Alignment explanation
Indices: 142230--142272 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
142220 TAATCATGAA
142230 ATATAA-TAA-AATAATATTT
1 ATATAATTAAGAA-AATATTT
142249 -TATAATTAAGAAAATATTT
1 ATATAATTAAGAAAATATTT
142268 ATATA
1 ATATA
142273 TGTTAACTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
18 5 0.24
19 10 0.48
20 6 0.29
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (20 bp):
ATATAATTAAGAAAATATTT
Found at i:143047 original size:246 final size:235
Alignment explanation
Indices: 142574--143138 Score: 567
Period size: 246 Copynumber: 2.3 Consensus size: 235
142564 AAATGATATA
* *
142574 ATAATTAGTAAAATAGATATATTCTTTTAATAATTATTATTTAGGTAAGAAAGT-GTGAAAATTT
1 ATAATTAGTAAAATAGATATATT-TTTTAATAATTATTATTTAGGTAAGAAGGTAG-GAAAAATT
* *
142638 TACTTCTAATAAGTATTAAATGTACAATTTAATAGAGGAGAGGAGTCAATTTAGAATTTTTAATC
64 TACTTTTAATGAGTATTAAA-GTACAATTTAATAGAGGAGAGGAGTCAATTTAGAATTTTTAATC
* *
142703 ATATTTATATATAATAAGATTTTAGAATGACACTATCAGTAAAATAAATATTATTTTTTTAATAA
128 ATATTTATATATAATAAAATTTTAGAATGACACTATCAGTAAAATAAATA-TATTTTTTTAAGAA
** * * *
142768 TTCTTACTTAGGTTGAGAGAGGAGATAGGGAGCAATAAAATTTTAGAATGAC
192 -T-GGAC-GAGGTAGAGAGAGGAGAGAGGGAGCAAT-AAA----AGAATGAC
* *
142820 GTAATTAGTAAAATAGATATACTTTTTTAATAATTATTATTTAGGTAAGAAGGTAGGAAAAAATT
1 ATAATTAGTAAAATAGATATA-TTTTTTAATAATTATTATTTAGGTAAGAAGGTAGGAAAAATTT
* * * *
142885 ACTTTTAATGAGTATTAAA-TACAATACTTAATGAAGAGGATATGTGTCAATTTAGAA-TTTTCA
65 ACTTTTAATGAGTATTAAAGTACAAT--TTAAT--AGAGGAGAGGAGTCAATTTAGAATTTTTAA
* ***
142948 TCGTATTTATATATAATAAAATTTTAGAATGACACTAAAT-AGATACTTTAAATA-ATTCTTTGT
126 TCATATTTATATATAATAAAATTTTAGAATGACACT--ATCAG-TAAAATAAATATATT-TTT-T
*
143011 TAGGAGA-GGA-GAGG-AGAGTAGAGGAGAGAGGGGAGCAATAAAAGAATGAC
186 TAAGA-ATGGACGAGGTAGAG-AGAGGAGAGA-GGGAGCAATAAAAGAATGAC
* * * * *
143061 ATAATTACTAAAATAGATATGTTTTTTAATAATTTTTATTTTGG-AA-AAGATA-GAAAAATTTT
1 ATAATTAGTAAAATAGATATATTTTTTAATAATTATTATTTAGGTAAGAAGGTAGGAAAAA-TTT
*
143123 ATTTTTAATGAGTATT
65 ACTTTTAATGAGTATT
143139 GAATTCACAC
Statistics
Matches: 274, Mismatches: 30, Indels: 38
0.80 0.09 0.11
Matches are distributed among these distances:
237 6 0.02
238 22 0.08
239 2 0.01
240 21 0.08
241 26 0.09
244 9 0.03
245 15 0.05
246 87 0.32
247 46 0.17
248 25 0.09
249 14 0.05
250 1 0.00
ACGTcount: A:0.42, C:0.05, G:0.16, T:0.37
Consensus pattern (235 bp):
ATAATTAGTAAAATAGATATATTTTTTAATAATTATTATTTAGGTAAGAAGGTAGGAAAAATTTA
CTTTTAATGAGTATTAAAGTACAATTTAATAGAGGAGAGGAGTCAATTTAGAATTTTTAATCATA
TTTATATATAATAAAATTTTAGAATGACACTATCAGTAAAATAAATATATTTTTTTAAGAATGGA
CGAGGTAGAGAGAGGAGAGAGGGAGCAATAAAAGAATGAC
Found at i:144798 original size:22 final size:22
Alignment explanation
Indices: 144772--144815 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
144762 TTTAAAAAAT
144772 TAATAATAAACAAATTTAATGG
1 TAATAATAAACAAATTTAATGG
* *
144794 TAATAATAAATAGATTTAATGG
1 TAATAATAAACAAATTTAATGG
144816 AACTGAGGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.52, C:0.02, G:0.11, T:0.34
Consensus pattern (22 bp):
TAATAATAAACAAATTTAATGG
Found at i:147211 original size:18 final size:18
Alignment explanation
Indices: 147188--147230 Score: 86
Period size: 18 Copynumber: 2.4 Consensus size: 18
147178 CTGAGGCATT
147188 TTGGATCAATCTGAAAAG
1 TTGGATCAATCTGAAAAG
147206 TTGGATCAATCTGAAAAG
1 TTGGATCAATCTGAAAAG
147224 TTGGATC
1 TTGGATC
147231 TAACTCAGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.35, C:0.12, G:0.23, T:0.30
Consensus pattern (18 bp):
TTGGATCAATCTGAAAAG
Found at i:148639 original size:3 final size:3
Alignment explanation
Indices: 148631--148660 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
148621 CTATTTTTCA
148631 TTC TTC TTC TTC -TC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
148661 AAGCATAGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 24 0.92
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:148650 original size:14 final size:14
Alignment explanation
Indices: 148631--148657 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
148621 CTATTTTTCA
148631 TTCTTCTTCTTCTC
1 TTCTTCTTCTTCTC
148645 TTCTTCTTCTTCT
1 TTCTTCTTCTTCT
148658 TCTAAGCATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (14 bp):
TTCTTCTTCTTCTC
Found at i:159624 original size:141 final size:141
Alignment explanation
Indices: 159458--159809 Score: 449
Period size: 142 Copynumber: 2.5 Consensus size: 141
159448 TATAATAAAC
* * * * * * * *
159458 TGAATCGAATAATCAATTTGTAACCTC-AGGCAT-AAGAACGATGACTAAACTAAATATTCACCT
1 TGAATCAAATAATTAATATGGAACCTCGA-GCATAAAG-ACGAGGACCAAATTAAAAATTCACCT
* * * *
159521 AAATTAAAAGACTAAAGTGAAATT-AAACTAAAATGAAAGCTCTAATTATTGAAACCTAACCAAT
64 AAATTAAAAGACCAAAGTAAAATTAAAACTAAAATGAAAGCTCTAA-TAATAAAACCTAACCAAT
159585 TTTAGAAATTTTAT
128 TTTAGAAATTTTAT
* * *
159599 TGAATCAAATAATTAATATGGAACCTCGAGCATAAAGGCGAGGACCAAATTAAAAAATTCACTTG
1 TGAATCAAATAATTAATATGGAACCTCGAGCATAAAGACGAGGACCAAATT-AAAAATTCACCTA
** * * *
159664 AATTAAGGGACCAAGGTAAAATTAAAACTAAGATGAAGGCTCTAATAATAAAACCTAACCAATTT
65 AATTAAAAGACCAAAGTAAAATTAAAACTAAAATGAAAGCTCTAATAATAAAACCTAACCAATTT
159729 TAGAAATTTTAT
130 TAGAAATTTTAT
**
159741 TGAATCAAATAATTAATATGGAACCTCGAGCATAAATTCGAGGACCAAATTAAAAATTCACCTAA
1 TGAATCAAATAATTAATATGGAACCTCGAGCATAAAGACGAGGACCAAATTAAAAATTCACCTAA
159806 ATTA
66 ATTA
159810 TTATAGAATT
Statistics
Matches: 183, Mismatches: 24, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
141 53 0.29
142 111 0.61
143 19 0.10
ACGTcount: A:0.46, C:0.14, G:0.12, T:0.27
Consensus pattern (141 bp):
TGAATCAAATAATTAATATGGAACCTCGAGCATAAAGACGAGGACCAAATTAAAAATTCACCTAA
ATTAAAAGACCAAAGTAAAATTAAAACTAAAATGAAAGCTCTAATAATAAAACCTAACCAATTTT
AGAAATTTTAT
Found at i:161035 original size:3 final size:3
Alignment explanation
Indices: 161027--161057 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
161017 TATGAGTTTT
161027 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
161058 TAAAAGGTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:161853 original size:15 final size:16
Alignment explanation
Indices: 161828--161877 Score: 66
Period size: 16 Copynumber: 3.2 Consensus size: 16
161818 AGTATCAATA
*
161828 AAATAAATATTTATTT
1 AAATAAATATTCATTT
161844 AAAT-AATATTCATTT
1 AAATAAATATTCATTT
* *
161859 AAAAAAATATTCTTTT
1 AAATAAATATTCATTT
161875 AAA
1 AAA
161878 ATTATTTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
15 13 0.43
16 17 0.57
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (16 bp):
AAATAAATATTCATTT
Found at i:161878 original size:15 final size:15
Alignment explanation
Indices: 161832--161878 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
161822 TCAATAAAAT
161832 AAATATT-TATTTAAA
1 AAATATTCT-TTTAAA
* *
161847 TAATATTCATTTAAAA
1 AAATATTC-TTTTAAA
161863 AAATATTCTTTTAAA
1 AAATATTCTTTTAAA
161878 A
1 A
161879 TTATTTTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
15 13 0.50
16 12 0.46
17 1 0.04
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (15 bp):
AAATATTCTTTTAAA
Found at i:162267 original size:60 final size:59
Alignment explanation
Indices: 162121--162269 Score: 174
Period size: 60 Copynumber: 2.4 Consensus size: 59
162111 TTAAAAGGGT
*
162121 AAAGTATACACAAATGGTTCCCCGACTATAAGGTGATACTTTGTTGAGTCTCTCGACTATTA
1 AAAGT-TACA-AAATGG-TCCCCGACTATAAGGTGATACTTTGTTAAGTCTCTCGACTATTA
* ** * * *
162183 AAAGTTACAAAATAGTTCTTCGACTATAGGGTGATGCTTTGTTAAGTC-CATCGGCTATTA
1 AAAGTTACAAAAT-GGTCCCCGACTATAAGGTGATACTTTGTTAAGTCTC-TCGACTATTA
162243 AAAGTTACAAAATGGTCACCCGACTAT
1 AAAGTTACAAAATGGTC-CCCGACTAT
162270 TTAGTATGTT
Statistics
Matches: 74, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
59 4 0.05
60 60 0.81
61 5 0.07
62 5 0.07
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (59 bp):
AAAGTTACAAAATGGTCCCCGACTATAAGGTGATACTTTGTTAAGTCTCTCGACTATTA
Found at i:163981 original size:45 final size:46
Alignment explanation
Indices: 163928--164207 Score: 349
Period size: 45 Copynumber: 6.2 Consensus size: 46
163918 TATTCATTAT
* * *
163928 TTTCATTTA-AGACATACTTTCATGTCTTTAATGCACTGTTAAGCA
1 TTTCATTTATAGACATCCTTTCATGCCTTTAATGCACTGTTATGCA
* *
163973 TTTTATTTAT-GACATCCTTTCATGCCTTTAATGCACTATTATGCA
1 TTTCATTTATAGACATCCTTTCATGCCTTTAATGCACTGTTATGCA
*
164018 TTTCATTTATAG-CA-CCTTTTCATGTCTTTAATGCACTGTTATGCA
1 TTTCATTTATAGACATCC-TTTCATGCCTTTAATGCACTGTTATGCA
* * *
164063 TTTCATTTATAG-CACCCTTTCATGTCTTTAATGCACCGTTATGCA
1 TTTCATTTATAGACATCCTTTCATGCCTTTAATGCACTGTTATGCA
* ** *
164108 TTTCATTTATGGA-ATCCTTTCATGCCTTTAATGCACCATAATGCA
1 TTTCATTTATAGACATCCTTTCATGCCTTTAATGCACTGTTATGCA
* ** *
164153 TTTCATTTAT-GACATCCTTTCATGCCTTTAATGTACCATTATTCA
1 TTTCATTTATAGACATCCTTTCATGCCTTTAATGCACTGTTATGCA
164198 TTTCATTTAT
1 TTTCATTTAT
164208 GCGTTCGTTT
Statistics
Matches: 212, Mismatches: 17, Indels: 12
0.88 0.07 0.05
Matches are distributed among these distances:
44 4 0.02
45 205 0.97
46 3 0.01
ACGTcount: A:0.25, C:0.21, G:0.10, T:0.45
Consensus pattern (46 bp):
TTTCATTTATAGACATCCTTTCATGCCTTTAATGCACTGTTATGCA
Found at i:164026 original size:24 final size:24
Alignment explanation
Indices: 163999--164116 Score: 92
Period size: 24 Copynumber: 5.2 Consensus size: 24
163989 CTTTCATGCC
*
163999 TTTAATGCACTATTATGCATTTCA
1 TTTAATGCACTGTTATGCATTTCA
*
164023 TTT-ATAGCACCT-TT-T-CATGTC-
1 TTTAAT-GCA-CTGTTATGCATTTCA
164044 TTTAATGCACTGTTATGCATTTCA
1 TTTAATGCACTGTTATGCATTTCA
** *
164068 TTT-ATAGCACCCTT-T-CATGTC-
1 TTTAAT-GCACTGTTATGCATTTCA
*
164089 TTTAATGCACCGTTATGCATTTCA
1 TTTAATGCACTGTTATGCATTTCA
164113 TTTA
1 TTTA
164117 TGGAATCCTT
Statistics
Matches: 75, Mismatches: 7, Indels: 24
0.71 0.07 0.23
Matches are distributed among these distances:
20 2 0.03
21 18 0.24
22 16 0.21
23 16 0.21
24 21 0.28
25 2 0.03
ACGTcount: A:0.24, C:0.20, G:0.10, T:0.46
Consensus pattern (24 bp):
TTTAATGCACTGTTATGCATTTCA
Found at i:164152 original size:135 final size:135
Alignment explanation
Indices: 163944--164207 Score: 390
Period size: 135 Copynumber: 2.0 Consensus size: 135
163934 TTAAGACATA
* *
163944 CTTTCATGTCTTTAATGCACTGTTAAGCATTTTATTTATGACATCCTTTCATGCCTTTAATGCAC
1 CTTTCATGTCTTTAATGCACCGTTAAGCATTTCATTTATGACATCCTTTCATGCCTTTAATGCAC
* * * **
164009 TATTATGCATTTCATTTAT-AGCA-CCTTTTCATGTCTTTAATGCACTGTTATGCATTTCATTTA
66 CATAATGCATTTCATTTATGA-CATCC-TTTCATGCCTTTAATGCACCATTATGCATTTCATTTA
164072 TAGCACC
129 TAGCACC
*
164079 CTTTCATGTCTTTAATGCACCGTTATGCATTTCATTTATGGA-ATCCTTTCATGCCTTTAATGCA
1 CTTTCATGTCTTTAATGCACCGTTAAGCATTTCATTTAT-GACATCCTTTCATGCCTTTAATGCA
* *
164143 CCATAATGCATTTCATTTATGACATCCTTTCATGCCTTTAATGTACCATTATTCATTTCATTTAT
65 CCATAATGCATTTCATTTATGACATCCTTTCATGCCTTTAATGCACCATTATGCATTTCATTTAT
164208 GCGTTCGTTT
Statistics
Matches: 116, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
135 111 0.96
136 5 0.04
ACGTcount: A:0.24, C:0.21, G:0.10, T:0.45
Consensus pattern (135 bp):
CTTTCATGTCTTTAATGCACCGTTAAGCATTTCATTTATGACATCCTTTCATGCCTTTAATGCAC
CATAATGCATTTCATTTATGACATCCTTTCATGCCTTTAATGCACCATTATGCATTTCATTTATA
GCACC
Found at i:164771 original size:95 final size:95
Alignment explanation
Indices: 164630--164807 Score: 261
Period size: 95 Copynumber: 1.9 Consensus size: 95
164620 CTACCATGGT
* * * *
164630 ATCGATACTTCTATACTATGTTACTGTTACCCTCTCTCAGTATCGATACCATTTCT-ACATTCTG
1 ATCGATACTACTATACTATGGTACCGATACCCTCTCTCAGTATCGATACCATTT-TGACATTCTG
*
164694 TAATGCATGGTATCGATACCTTTATCTCAGA
65 TAATCCATGGTATCGATACCTTTATCTCAGA
* *
164725 ATCGATACTACTATACTATGGTACCGATACTCC-CTTTCAGTATCGATACCATTTTGGCATTCTG
1 ATCGATACTACTATACTATGGTACCGATAC-CCTCTCTCAGTATCGATACCATTTTGACATTCTG
164789 TAATCCATGGTATCGATAC
65 TAATCCATGGTATCGATAC
164808 TTTCCCTTTT
Statistics
Matches: 74, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
94 1 0.01
95 71 0.96
96 2 0.03
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.37
Consensus pattern (95 bp):
ATCGATACTACTATACTATGGTACCGATACCCTCTCTCAGTATCGATACCATTTTGACATTCTGT
AATCCATGGTATCGATACCTTTATCTCAGA
Done.