genome.fa.s5650.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005650.1 Hibiscus syriacus cultivar Beakdansim tig00013205_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  169512

Tables:   1   

This is table  1  of  1  ( 116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1022--1081	12	5.0	12	76	8	59	50	18	13	18	1.78
1011--1116	24	4.4	24	71	7	81	47	16	13	22	1.82
3559--3589	7	4.4	7	91	0	53	25	25	32	16	1.96
3581--3623	13	3.3	13	93	0	77	16	23	44	16	1.86
10449--10507	29	2.0	29	93	0	100	45	13	30	10	1.76
12190--12347	21	7.8	20	72	7	86	38	25	17	18	1.92
12314--12543	20	11.5	20	83	3	230	38	24	18	19	1.93
12631--12668	20	1.9	20	84	10	51	23	44	7	23	1.79
13224--13270	24	2.0	24	87	8	69	25	14	21	38	1.92
13445--13469	12	2.1	12	100	0	50	72	0	28	0	0.86
15801--15898	19	5.4	19	84	13	143	14	22	17	45	1.84
15782--15898	53	2.2	53	98	1	227	13	23	17	44	1.85
16005--16041	14	2.6	14	91	0	65	45	21	0	32	1.52
18021--18077	14	3.7	14	77	20	60	45	22	21	10	1.82
18002--18094	33	2.8	33	95	0	168	47	21	20	10	1.80
17965--18099	19	7.6	19	76	16	128	45	23	19	11	1.82
18095--18223	19	7.3	19	73	17	116	9	17	27	45	1.78
18095--18186	33	2.8	33	90	3	141	8	18	27	45	1.78
18267--18740	93	5.1	93	98	0	912	46	18	12	22	1.83
20445--20534	14	5.7	14	74	23	81	41	24	25	8	1.84
20437--20551	33	3.5	33	95	0	203	44	21	24	9	1.82
20444--20556	19	6.8	18	72	23	88	42	23	24	9	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20568--20621	14	3.5	14	73	22	54	7	25	24	42	1.80
20552--20632	33	2.5	33	93	0	135	7	23	22	46	1.76
20608--20685	41	1.9	41	94	0	138	11	26	16	44	1.82
20609--20684	21	3.7	21	82	3	100	10	26	17	46	1.80
20763--20833	33	2.2	33	89	0	106	47	16	23	11	1.79
20989--21043	22	2.5	22	81	0	74	20	16	40	23	1.91
21166--21247	40	2.1	40	81	6	96	23	15	23	37	1.93
21189--21361	20	8.6	20	82	4	188	18	20	25	35	1.95
21348--21430	21	4.0	21	73	6	78	25	16	24	33	1.96
21328--21426	42	2.4	43	77	11	100	21	18	23	37	1.94
38176--38218	21	2.0	21	86	0	59	30	27	25	16	1.97
38198--38347	65	2.2	68	87	4	207	27	26	27	18	1.98
38713--38771	30	2.0	30	90	6	93	38	3	23	33	1.72
38985--39051	22	3.0	22	95	0	125	19	25	26	28	1.99
45082--45124	21	2.0	21	86	0	59	30	27	25	16	1.97
45104--45256	67	2.2	69	88	2	220	26	27	27	18	1.98
45621--45679	30	2.0	30	90	6	93	38	3	23	33	1.72
45893--45959	22	3.0	22	100	0	134	19	26	26	26	1.99
48809--48850	16	2.6	17	81	11	52	50	2	2	45	1.27
52179--52211	17	1.9	17	88	11	50	0	3	30	66	1.06
54469--54493	2	12.5	2	100	0	50	48	0	0	52	1.00
56535--56570	18	2.0	18	100	0	72	33	11	38	16	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58945--58975	16	2.0	16	93	6	55	38	22	19	19	1.93
66420--66469	2	25.0	2	95	0	82	50	4	0	46	1.20
73137--73512	43	8.8	42	77	9	305	34	20	19	25	1.96
73137--73512	85	4.4	84	82	7	379	34	20	19	25	1.96
73137--73512	128	2.9	126	76	7	357	34	20	19	25	1.96
75682--75740	23	2.6	23	97	2	111	28	6	30	33	1.83
77226--77628	41	9.7	41	80	5	382	32	18	19	28	1.96
77243--77548	125	2.5	123	81	3	353	34	18	19	27	1.95
77226--77587	166	2.2	166	88	3	534	32	19	19	28	1.96
81466--81581	42	2.8	42	94	1	207	17	19	18	43	1.88
81770--81883	22	4.8	23	72	19	74	50	0	0	48	1.13
81781--81859	31	2.5	32	80	16	92	48	1	0	50	1.08
81801--81942	28	5.0	28	69	20	89	47	1	1	49	1.18
82108--82177	20	3.5	20	96	0	131	35	14	10	40	1.79
82108--82186	40	2.0	40	89	0	122	35	15	8	40	1.78
82160--82234	15	5.1	15	83	6	100	34	20	8	37	1.82
82160--82225	29	2.3	29	100	0	132	34	19	7	37	1.80
82267--82308	14	2.9	15	78	7	59	42	7	19	30	1.78
82291--82360	20	3.5	20	96	0	131	40	10	14	35	1.79
82526--82594	28	2.4	28	81	16	86	50	1	1	46	1.19
82584--82671	23	3.9	23	72	18	69	47	1	1	50	1.16
82618--82682	29	2.2	30	84	13	82	52	0	1	46	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82630--82706	30	2.6	30	76	15	79	50	0	0	49	1.00
82882--83001	42	2.9	42	96	0	213	45	19	19	15	1.85
83644--83725	39	2.1	40	95	2	148	32	3	14	48	1.61
83887--84006	42	2.9	42	96	0	222	15	20	19	45	1.86
84261--84363	30	3.6	29	75	20	92	43	0	1	53	1.18
84528--84598	20	3.5	20	92	0	124	36	14	8	40	1.76
84528--84607	40	2.0	40	87	0	115	36	15	7	41	1.75
84581--84662	15	5.5	15	94	2	139	37	19	7	35	1.80
92312--92377	2	33.0	2	100	0	132	50	0	0	50	1.00
93360--93385	2	13.0	2	100	0	52	50	0	0	50	1.00
93763--93815	21	2.5	21	81	6	63	22	26	18	32	1.97
93801--94038	21	11.9	20	90	3	277	34	18	20	26	1.96
93801--94038	41	5.9	40	86	4	259	34	18	20	26	1.96
93801--94036	62	3.9	61	85	4	293	34	18	20	26	1.96
94591--94669	20	3.9	21	86	5	94	51	17	18	11	1.75
94591--94712	20	6.5	19	75	13	92	49	21	18	10	1.78
94708--94867	19	9.1	19	68	21	116	11	23	20	45	1.84
94713--94867	33	4.5	33	86	6	202	11	22	20	45	1.83
94763--94818	14	3.6	14	74	21	58	8	23	23	44	1.81
96554--97021	94	5.1	94	93	1	752	21	12	19	46	1.82
97117--97174	19	3.0	20	79	5	82	50	17	22	10	1.76
97222--97302	39	2.1	39	92	0	135	11	22	19	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97193--97295	19	5.6	19	74	13	108	10	23	21	44	1.83
99189--99225	14	2.6	14	88	12	58	32	0	18	48	1.49
99332--99415	14	5.1	17	70	24	72	45	17	23	13	1.84
99332--99444	33	3.4	33	95	0	190	46	19	22	12	1.83
99332--99423	19	5.4	19	71	24	96	45	18	22	13	1.84
99454--99577	33	3.8	33	96	0	221	11	24	18	45	1.82
99489--99600	19	6.4	19	70	20	91	16	22	17	43	1.87
99475--99562	14	5.6	14	70	23	59	11	25	19	44	1.84
102117--102170	24	2.2	24	90	0	81	40	20	16	22	1.91
102996--103045	20	2.5	20	87	6	75	22	14	20	44	1.86
103041--103083	21	2.0	21	86	4	59	37	16	25	20	1.93
103530--103560	2	15.5	2	100	0	62	51	0	0	48	1.00
108488--108870	32	11.9	33	85	5	482	34	20	16	27	1.94
108478--108870	64	6.2	64	87	2	533	35	19	17	27	1.94
113447--113494	21	2.2	22	88	3	71	25	27	18	29	1.98
114136--114384	32	7.8	32	83	5	276	35	20	16	27	1.94
120564--120590	3	9.0	3	100	0	54	33	0	33	33	1.58
122787--122836	27	1.9	27	84	8	68	36	0	2	62	1.07
126176--126227	24	2.3	23	83	6	61	53	1	3	40	1.30
128394--128643	139	1.8	134	82	8	317	27	14	24	34	1.94
128676--128929	135	1.9	137	81	6	311	26	12	25	34	1.92
131066--131094	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144479--144600	61	2.0	61	93	0	208	31	18	20	30	1.96
144568--144669	51	2.0	51	100	0	204	35	9	19	35	1.85
149508--149572	27	2.4	27	100	0	130	50	23	6	20	1.70
151692--151815	64	1.9	64	82	6	153	36	20	16	25	1.94
159573--159639	5	13.4	5	93	0	107	14	2	20	61	1.47
163022--163051	15	2.1	14	93	6	51	46	0	0	53	1.00

Tables:   1

The End!