genome.fa.s5651.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005651.1 Hibiscus syriacus cultivar Beakdansim tig00013206_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57114

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1365--1404	21	1.9	21	89	0	62	35	0	15	50	1.44
1964--1993	11	2.7	11	100	0	60	36	0	53	10	1.35
7746--7804	29	2.0	29	100	0	118	23	13	13	49	1.78
12419--12506	29	3.0	29	100	0	176	23	13	13	48	1.78
19270--19323	21	2.6	21	96	0	99	31	20	20	27	1.97
19244--19343	21	4.8	21	81	2	76	35	23	18	24	1.96
19330--19559	20	11.5	20	82	5	241	36	25	17	20	1.94
20242--20288	24	2.0	24	83	8	60	25	12	21	40	1.89
22716--22861	33	4.2	33	81	11	168	46	18	21	13	1.83
22730--22918	19	10.7	19	76	17	201	45	17	21	15	1.85
22716--22918	52	3.9	52	84	10	263	45	18	21	14	1.85
22927--23024	19	5.4	19	82	13	134	14	21	17	46	1.83
22908--23024	53	2.2	53	95	1	209	13	23	17	44	1.85
23131--23167	14	2.6	14	91	0	65	45	21	0	32	1.52
25135--25191	14	3.7	14	77	20	60	45	22	21	10	1.82
25116--25208	33	2.8	33	93	0	159	48	21	19	10	1.79
25079--25213	19	7.6	19	76	16	119	46	23	18	11	1.81
25209--25336	19	7.3	19	73	19	116	8	17	28	45	1.78
25209--25299	32	2.8	34	90	6	143	7	18	28	45	1.77
25384--25944	93	6.1	93	98	0	1081	46	19	12	21	1.83
25384--25944	185	3.0	186	97	0	1081	46	19	12	21	1.83
25384--25944	278	2.0	279	98	0	1081	46	19	12	21	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27647--27736	14	5.7	14	69	23	63	44	22	23	10	1.82
27639--27753	33	3.5	33	97	0	221	46	20	22	10	1.80
27661--27758	19	5.7	19	69	22	90	44	21	22	11	1.83
27770--27826	14	3.7	14	75	20	60	8	24	22	43	1.81
27754--27834	33	2.5	33	95	0	144	8	22	22	46	1.78
27811--27886	21	3.7	21	83	3	109	11	25	17	46	1.82
27810--27887	41	1.9	41	97	0	147	12	25	16	44	1.83
27966--28036	33	2.2	33	92	0	115	47	18	22	11	1.80
28218--28272	22	2.5	22	81	0	74	20	16	40	23	1.91
28419--28572	20	7.7	20	81	7	168	18	18	26	37	1.93
28418--28572	40	3.8	40	82	4	186	18	18	26	37	1.93
28559--28641	21	4.0	21	73	6	78	25	16	24	33	1.96
28539--28637	42	2.4	43	77	11	100	21	18	23	37	1.94
28806--28858	22	2.4	22	96	0	97	45	0	13	41	1.43
29977--30008	2	17.0	2	87	12	50	50	0	0	50	1.00
31571--31630	15	3.7	17	84	11	65	26	35	21	16	1.95
31584--31631	15	3.2	15	96	0	87	31	33	20	14	1.93
31776--31810	12	2.9	12	91	0	52	37	25	5	31	1.80
31815--31866	2	26.0	2	100	0	104	50	0	0	50	1.00
32161--32386	64	3.5	63	78	4	195	28	19	19	33	1.96
34232--34266	13	2.8	13	95	4	63	31	17	37	14	1.89
34280--34475	93	2.1	91	97	2	365	33	21	32	11	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34280--34474	61	3.2	64	85	10	257	33	22	32	11	1.89
34506--34614	29	3.8	29	95	2	175	15	30	32	22	1.95
34698--34732	18	1.9	18	100	0	70	28	17	25	28	1.97
34834--34879	23	2.0	23	100	0	92	47	4	39	8	1.54
34883--34948	4	16.5	4	76	9	55	63	0	34	1	1.04
34834--34894	23	2.6	23	86	5	59	50	6	36	6	1.54
34882--34940	21	2.9	21	94	2	102	62	0	35	1	1.05
35073--35161	41	2.2	41	78	8	92	42	1	10	46	1.45
35142--35233	46	2.0	48	87	8	136	42	0	11	45	1.41
35274--35350	34	2.3	33	81	14	88	40	0	12	46	1.42
35396--35442	16	3.0	16	84	9	53	29	0	10	59	1.31
35417--35447	15	2.1	14	94	5	53	38	0	6	54	1.26
38445--38503	26	2.3	24	78	16	64	40	3	8	47	1.51
39324--39378	8	7.4	8	73	22	57	60	12	0	27	1.33
39307--39378	36	1.9	38	91	5	121	58	11	0	30	1.33
39354--39402	21	2.3	21	85	3	71	53	16	0	30	1.43
39904--39961	25	2.3	25	79	5	64	22	43	17	17	1.88
40020--40099	29	2.8	29	94	0	133	16	27	33	22	1.95
42332--42401	30	2.3	30	100	0	140	44	20	5	30	1.74
42272--42463	102	1.9	102	98	0	375	40	20	12	27	1.88
43241--43409	60	2.8	59	84	3	212	38	15	13	31	1.87
44635--45472	341	2.5	340	92	2	1375	44	6	4	44	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46158--46191	2	17.0	2	100	0	68	50	0	0	50	1.00
46475--46519	16	2.8	16	93	0	81	55	22	13	8	1.65
54493--54563	18	3.8	19	71	14	60	33	30	14	21	1.92
55134--55267	64	2.1	62	80	11	148	26	21	18	33	1.96
56262--56313	24	2.2	24	82	0	59	50	25	13	11	1.75

Tables:   1

The End!