genome.fa.s5652.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005652.1 Hibiscus syriacus cultivar Beakdansim tig00013210_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92031

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16239--16307	37	1.9	36	88	5	104	30	4	18	46	1.69
16717--16749	16	2.1	16	94	0	57	33	6	27	33	1.81
20788--20856	37	1.9	36	88	5	104	30	4	18	46	1.69
26776--26889	23	5.0	23	86	0	156	32	23	26	17	1.97
27121--27179	30	2.0	29	83	3	73	33	22	6	37	1.80
28369--28422	20	2.7	20	100	0	108	20	38	16	24	1.92
31114--31138	2	12.5	2	100	0	50	52	0	0	48	1.00
31569--31637	23	3.0	23	82	0	93	31	26	23	18	1.97
31569--31668	46	2.2	46	80	10	107	34	24	22	20	1.97
37945--38025	28	2.9	27	80	10	92	23	0	27	49	1.50
37945--38029	7	12.1	7	79	0	71	22	0	29	48	1.51
37952--38029	21	3.7	22	77	6	81	23	0	28	48	1.51
41962--42015	21	2.6	21	93	0	90	22	18	18	40	1.91
44773--44800	2	14.0	2	100	0	56	50	0	0	50	1.00
48640--48681	22	1.9	22	90	9	68	47	2	9	40	1.49
49234--49276	2	21.5	2	86	9	61	48	2	2	46	1.27
50636--50671	15	2.4	15	90	0	54	41	2	0	55	1.14
51838--51884	22	2.1	23	84	11	62	46	0	8	44	1.33
55365--55472	42	2.6	42	90	0	162	18	16	14	50	1.79
55641--55678	12	3.2	12	77	7	51	47	0	0	52	1.00
55641--55686	21	2.1	22	88	8	67	47	0	0	52	1.00
55639--55744	55	2.0	52	81	9	124	50	2	0	47	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55664--55749	31	2.7	32	82	12	97	50	3	0	46	1.18
55744--55805	31	2.0	31	81	12	74	43	0	1	54	1.09
55978--56016	19	2.0	20	85	5	53	61	0	0	38	0.96
56217--56256	15	2.7	15	100	0	80	40	15	12	32	1.84
56175--56256	30	2.8	30	84	1	103	35	17	8	39	1.80
56636--56678	2	22.0	2	95	4	79	48	0	0	51	1.00
72931--73016	43	2.0	43	100	0	172	41	16	11	30	1.83
73924--73968	20	2.2	20	84	0	63	42	2	0	55	1.12
73989--74042	18	2.9	20	73	13	53	50	1	0	48	1.11
74144--74190	22	2.1	23	88	4	69	53	0	2	44	1.12
74152--74206	22	2.5	22	79	8	58	54	0	1	43	1.10
74154--74250	23	4.1	23	75	17	67	50	0	3	46	1.17
75661--75694	17	2.1	16	88	5	50	35	0	14	50	1.44
84958--85124	20	8.6	19	70	13	99	34	24	14	26	1.94
85058--85124	19	3.6	18	78	13	64	35	23	14	25	1.94
86024--86077	24	2.2	24	86	0	72	22	16	18	42	1.89
88325--88360	18	2.0	18	94	0	63	55	22	2	19	1.56
88688--88762	20	3.8	20	85	3	100	38	24	18	18	1.93
88684--88759	40	1.9	38	89	5	116	39	22	18	19	1.92
88880--88929	25	2.0	25	96	0	91	26	8	22	44	1.80
89304--89392	39	2.3	39	86	0	124	47	19	13	20	1.82
89629--89672	20	2.2	20	91	0	70	15	22	25	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89757--89893	63	2.2	60	88	3	193	51	16	0	30	1.50

Tables:   1

The End!