Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005653.1 Hibiscus syriacus cultivar Beakdansim tig00013216_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47806

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4--284
55
5.1
55
91
0
420
28
27
15
29
1.96
1275--1300
8
3.2
8
100
0
52
11
11
0
76
1.01
1279--1315
20
1.9
20
94
5
67
13
10
0
75
1.04
3067--3155
30
3.0
30
88
1
126
32
25
21
20
1.97
3151--3251
31
3.2
31
80
8
132
33
18
18
28
1.95
4020--4051
2
16.0
2
100
0
64
50
0
0
50
1.00
4524--4568
21
2.1
21
87
0
63
15
24
28
31
1.96
14202--14239
16
2.3
16
95
4
67
36
28
7
26
1.84
15025--15635
54
11.5
53
82
7
643
34
17
24
23
1.96
15026--15635
107
5.8
105
85
5
705
34
17
24
23
1.96
20842--20884
22
2.0
22
85
0
59
53
2
0
44
1.13
30655--30687
16
2.0
17
88
5
50
42
27
15
15
1.86
39534--39801
43
6.2
43
79
0
257
21
17
25
35
1.95
39768--39848
43
1.9
42
82
7
101
24
12
24
38
1.90
43887--44121
41
5.6
41
78
5
236
27
16
25
30
1.96
43903--44121
84
2.6
84
84
2
269
28
16
25
29
1.97
45517--45867
82
4.3
82
79
6
293
31
19
16
33
1.94
45660--45877
41
5.3
41
71
15
162
31
22
16
30
1.95
45738--45877
42
3.3
43
72
16
116
31
21
16
30
1.95

Tables:   1

The End!