Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005654.1 Hibiscus syriacus cultivar Beakdansim tig00013217_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65065
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Found at i:466 original size:43 final size:43
Alignment explanation
Indices: 391--478 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 43
381 CTGTCATTCT
* *
391 TTTTTTTTGATAGGAATAGTAGGCCTCATTAAAAACCTCCCTC
1 TTTTTTTTGATAAGAATAGAAGGCCTCATTAAAAACCTCCCTC
* * * * *
434 TTTTTTTTGATAAGATTTGAAGGTCTCTTTAAAAACCTCCTTC
1 TTTTTTTTGATAAGAATAGAAGGCCTCATTAAAAACCTCCCTC
477 TT
1 TT
479 GATTAATGGA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.26, C:0.18, G:0.12, T:0.43
Consensus pattern (43 bp):
TTTTTTTTGATAAGAATAGAAGGCCTCATTAAAAACCTCCCTC
Found at i:14653 original size:60 final size:60
Alignment explanation
Indices: 14561--14683 Score: 174
Period size: 60 Copynumber: 2.0 Consensus size: 60
14551 GTCCCTCAAT
* ** *
14561 TATAGGGTGTTGCTTTGTTGAGTCACTTGACTATTAAAAGTTACAAAATGGTCACCCGAC
1 TATAGGATGTTGCTTTGTTGAGTCACCCGACTACTAAAAGTTACAAAATGGTCACCCGAC
* * * *
14621 TATAGGATGTTGCTTTGTTGAGTCCCCCGACTACTAAAAGTTACAAATTTGTCACTCGAC
1 TATAGGATGTTGCTTTGTTGAGTCACCCGACTACTAAAAGTTACAAAATGGTCACCCGAC
14681 TAT
1 TAT
14684 TTATTATGTT
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
60 55 1.00
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.34
Consensus pattern (60 bp):
TATAGGATGTTGCTTTGTTGAGTCACCCGACTACTAAAAGTTACAAAATGGTCACCCGAC
Found at i:16363 original size:60 final size:60
Alignment explanation
Indices: 16284--16416 Score: 146
Period size: 60 Copynumber: 2.2 Consensus size: 60
16274 ATCATATGTC
* * * **
16284 CTCAAACTATAACTCTCATTTTAAATT-GAT-CTCTAAAATTTTAAATGTTTCAATTTCAT-
1 CTCAAACTATGACTATCATTCTAAATTAG-TCCTC-AAAATTTTAAACATTTCAATTTCATA
* * *
16343 CCCTAAACTATGACTATCATTCTAGATTAGTCCTCAAAATTTTGAACATTTCAATTTCATA
1 CTC-AAACTATGACTATCATTCTAAATTAGTCCTCAAAATTTTAAACATTTCAATTTCATA
16404 CTCAAACTATGAC
1 CTCAAACTATGAC
16417 CTTCATTATA
Statistics
Matches: 61, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
59 2 0.03
60 53 0.87
61 6 0.10
ACGTcount: A:0.35, C:0.20, G:0.05, T:0.39
Consensus pattern (60 bp):
CTCAAACTATGACTATCATTCTAAATTAGTCCTCAAAATTTTAAACATTTCAATTTCATA
Found at i:16436 original size:60 final size:61
Alignment explanation
Indices: 16331--16454 Score: 137
Period size: 60 Copynumber: 2.0 Consensus size: 61
16321 ATTTTAAATG
* * *
16331 TTTCAATTTCATCCCTAAACTATGACTATCATTCTAGATTAGTCCTCAAA-ATTTTGAACA
1 TTTCAATTTCATCCCTAAACTATGACTATCATTATAAACTAGTCCTCAAACATTTTGAACA
* * * * *
16391 TTTCAATTTCAT-ACTCAAACTATGACCT-TCATTATAAACTGGTCCTTAAACTTTTTTAACA
1 TTTCAATTTCATCCCT-AAACTATGA-CTATCATTATAAACTAGTCCTCAAACATTTTGAACA
16452 TTT
1 TTT
16455 TGATTTTATC
Statistics
Matches: 53, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
59 2 0.04
60 38 0.72
61 13 0.25
ACGTcount: A:0.32, C:0.21, G:0.06, T:0.41
Consensus pattern (61 bp):
TTTCAATTTCATCCCTAAACTATGACTATCATTATAAACTAGTCCTCAAACATTTTGAACA
Found at i:16688 original size:29 final size:29
Alignment explanation
Indices: 16654--16749 Score: 97
Period size: 29 Copynumber: 3.2 Consensus size: 29
16644 AGAGGGTCAT
16654 AGTTTAAGGATGAAATTAGAATGTTCAAA
1 AGTTTAAGGATGAAATTAGAATGTTCAAA
* * * *
16683 AGTTTAACGACT-AATTTAGAATGAAAATC-AT
1 AGTTTAAGGA-TGAAATTAGAATG---TTCAAA
*
16714 AGTTTAAGGATGAAATTAGAATATTCAAA
1 AGTTTAAGGATGAAATTAGAATGTTCAAA
16743 AGTTTAA
1 AGTTTAA
16750 TGACTAATTT
Statistics
Matches: 52, Mismatches: 9, Indels: 12
0.71 0.12 0.16
Matches are distributed among these distances:
28 2 0.04
29 27 0.52
30 2 0.04
31 19 0.37
32 2 0.04
ACGTcount: A:0.46, C:0.05, G:0.17, T:0.32
Consensus pattern (29 bp):
AGTTTAAGGATGAAATTAGAATGTTCAAA
Found at i:16776 original size:60 final size:60
Alignment explanation
Indices: 16602--16779 Score: 202
Period size: 60 Copynumber: 3.0 Consensus size: 60
16592 TGAATTTGGA
* *** * *
16602 GATGAAATTGGAATATTCAAAA-TCTTGGGGACTAACTTAGAAAGAGGGTCATAGTTTAAG
1 GATGAAATTAGAATATTCAAAAGT-TTAACGACTAATTTAGAAAAAGGGTCATAGTTTAAG
* *
16662 GATGAAATTAGAATGTTCAAAAGTTTAACGACTAATTTAGAATGAAA--ATCATAGTTTAAG
1 GATGAAATTAGAATATTCAAAAGTTTAACGACTAATTTAGAA--AAAGGGTCATAGTTTAAG
* *
16722 GATGAAATTAGAATATTCAAAAGTTTAATGACTAATTTA-AAACAAGGGTTATAGTTTA
1 GATGAAATTAGAATATTCAAAAGTTTAACGACTAATTTAGAAA-AAGGGTCATAGTTTA
16780 GAGACATGAT
Statistics
Matches: 100, Mismatches: 12, Indels: 12
0.81 0.10 0.10
Matches are distributed among these distances:
57 1 0.01
58 2 0.02
59 2 0.02
60 92 0.92
61 1 0.01
62 2 0.02
ACGTcount: A:0.43, C:0.07, G:0.19, T:0.31
Consensus pattern (60 bp):
GATGAAATTAGAATATTCAAAAGTTTAACGACTAATTTAGAAAAAGGGTCATAGTTTAAG
Found at i:21334 original size:27 final size:27
Alignment explanation
Indices: 21304--21373 Score: 115
Period size: 27 Copynumber: 2.6 Consensus size: 27
21294 ATTTAAGGAA
21304 ATGGGTTTTTAGTTGATATGTTAGAAC
1 ATGGGTTTTTAGTTGATATGTTAGAAC
*
21331 ATGGGTTTTTAGTTGATATGTTAGAAT
1 ATGGGTTTTTAGTTGATATGTTAGAAC
*
21358 ATGAGTTTTTA-TTGAT
1 ATGGGTTTTTAGTTGAT
21374 GTTTATTAGT
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
26 5 0.12
27 36 0.88
ACGTcount: A:0.26, C:0.01, G:0.24, T:0.49
Consensus pattern (27 bp):
ATGGGTTTTTAGTTGATATGTTAGAAC
Found at i:23000 original size:81 final size:81
Alignment explanation
Indices: 22244--22978 Score: 1033
Period size: 81 Copynumber: 9.1 Consensus size: 81
22234 CTGTTTTAAA
* * * *
22244 TAAAATATTAATTGCCTAGCTGTGCATTTGACATAAAGATGTCAGTTATG-CAGTTAGATGAAAG
1 TAAAAGATTAATTGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
* *
22308 GCTAAATGTCTTTGAG
66 GTTAAATGCCTTTGAG
* * * * * * *
22324 TAAAAGATTAGTTGCGTAGATGTGCATTTGATAGAAATGTGTCAATTACGCTAGTTAGATGAAAG
1 TAAAAGATTAATTGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
22389 GTTAAATGCCTTTGAG
66 GTTAAATGCCTTTGAG
* * *
22405 TAAAAGATTAATTGTCTAGATGTGCATTTGACGGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
1 TAAAAGATTAATTGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
*
22470 GTTAAATGTCTTTGAG
66 GTTAAATGCCTTTGAG
* *
22486 TAAAAGATTAATTGCCTAGCTGTGCATCTGACAGAAAGGTATCAATTATGCCAGTTAGATGAAAG
1 TAAAAGATTAATTGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
22551 GTTAAATGCCTTTGAG
66 GTTAAATGCCTTTGAG
* **
22567 TAAAAGATTAATTGCCTAGCTGTGCATTTGATAGAAATATGTCAATTATGCCAGTTAGATGAAAG
1 TAAAAGATTAATTGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
22632 GTTAAATGCCTTTGAG
66 GTTAAATGCCTTTGAG
* * * * *
22648 TAAAAGATTAATTGCCTAGTTATGCATTTGATAGAAAGGTTTCAATTATGCCAGTTAAATGAAAG
1 TAAAAGATTAATTGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
22713 GTTAAATGCCTTTGAG
66 GTTAAATGCCTTTGAG
* * *
22729 TAAAAGATTAATTGCCTAGTTGTGCATTTGACAAAAATGTGTCAATTATGCCAGTTAGATGAAAG
1 TAAAAGATTAATTGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
*
22794 ATTAAATGCCTTTGAG
66 GTTAAATGCCTTTGAG
* ** * *
22810 TAAAAGATTAATTGCCTAGTTGTGCATTTGGTAGAAAGGTGTCAATCATGCCAGTTAAATGAAAG
1 TAAAAGATTAATTGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
*
22875 GCTAAATGCCTTTGAG
66 GTTAAATGCCTTTGAG
* * * * * * *
22891 TTAAAGATTAGA-TGCCTAGCTATGCATTTGGCAGAAGGGTGTTAATCATGCAAGTTAGATGAAA
1 TAAAAGATTA-ATTGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAA
* *
22955 GGCTAAATGCCTTTGGG
65 GGTTAAATGCCTTTGAG
22972 TAAAAGA
1 TAAAAGA
22979 CTAAATGTTT
Statistics
Matches: 589, Mismatches: 64, Indels: 3
0.90 0.10 0.00
Matches are distributed among these distances:
80 40 0.07
81 548 0.93
82 1 0.00
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.32
Consensus pattern (81 bp):
TAAAAGATTAATTGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
GTTAAATGCCTTTGAG
Found at i:29607 original size:81 final size:81
Alignment explanation
Indices: 29431--30013 Score: 760
Period size: 81 Copynumber: 7.2 Consensus size: 81
29421 CTGTTTTAAA
* * * *
29431 TAAAATATTAATTGCCTAGTTGTGCATTTGACAGAAAGGTGTCAATTATGTCA-TTAGATGAAAA
1 TAAAAGATTAATTGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
29495 GTTAAATGCCTTTGAG
66 GTTAAATGCCTTTGAG
* * * *
29511 TAAAAGATTAGTTGCCTAGCTGTGCATTTGACATAAATGTGTCAATTATGCTAGTTAGATGAAAG
1 TAAAAGATTAATTGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
29576 GTTAAATGCCTTTGAG
66 GTTAAATGCCTTTGAG
* * * * *
29592 TAAAAAATTAATTGCCTAGTTGTGCATTTGA-TGAAAATGTGTCAATTATACCAGTTAGATGAAA
1 TAAAAGATTAATTGCCTAGCTGTGCATTTGACAG-AAAGGTGTCAATTATGCCAGTTAGATGAAA
29656 GGTTAAATGCCTTTGAG
65 GGTTAAATGCCTTTGAG
* * * * ** *
29673 TAAAAGATTAATTGCCTTGTTGTGTATTTGATAGAAAGGTGTCAATTATAACAGATAGATGAAAG
1 TAAAAGATTAATTGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
* *
29738 GCTAAATGCCTTTAAG
66 GTTAAATGCCTTTGAG
* * * *
29754 TAAAAGATTAATTGCCTAGCTGTGCATTTGAAAGAAAGGTGTAAATTATGCCAGCTAGATGAAAT
1 TAAAAGATTAATTGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
29819 GTTAAATGCCTTTGAG
66 GTTAAATGCCTTTGAG
* *
29835 TAAAAGATTAATTACCTAG-TCGTGCATTTGATAGAAAGGTGTCAATTATGCCAGTTAGATGAAC
1 TAAAAGATTAATTGCCTAGCT-GTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAA-
* *
29899 A-ATTAACTGCCTTTGAG
64 AGGTTAAATGCCTTTGAG
* * * * * *
29916 TAAAAGATTAATTGCCTAGCTGTGCATTTGGCATAAATGTGTCAATCATGTCAGTTAGATAAAAG
1 TAAAAGATTAATTGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
*
29981 GCTAAATGCCTTTGAG
66 GTTAAATGCCTTTGAG
* *
29997 TTAAAGATTAAATGCCT
1 TAAAAGATTAATTGCCT
30014 TTGGGTAAAA
Statistics
Matches: 442, Mismatches: 54, Indels: 13
0.87 0.11 0.03
Matches are distributed among these distances:
80 48 0.11
81 391 0.88
82 3 0.01
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.33
Consensus pattern (81 bp):
TAAAAGATTAATTGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
GTTAAATGCCTTTGAG
Found at i:30008 original size:22 final size:22
Alignment explanation
Indices: 29975--30032 Score: 80
Period size: 22 Copynumber: 2.6 Consensus size: 22
29965 GTCAGTTAGA
*
29975 TAAAAGGCTAAATGCCTTTGAG
1 TAAAAGACTAAATGCCTTTGAG
* * *
29997 TTAAAGATTAAATGCCTTTGGG
1 TAAAAGACTAAATGCCTTTGAG
30019 TAAAAGACTAAATG
1 TAAAAGACTAAATG
30033 TTTAAAAGTG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.40, C:0.10, G:0.21, T:0.29
Consensus pattern (22 bp):
TAAAAGACTAAATGCCTTTGAG
Found at i:32619 original size:33 final size:32
Alignment explanation
Indices: 32558--32646 Score: 97
Period size: 33 Copynumber: 2.7 Consensus size: 32
32548 ACCTACCAAA
* **
32558 ACTCAACCACTACTTGACACCACTGAAACGTCT
1 ACTCAACCACCACTTGACACCA-TGAAACACCT
*
32591 ACTCAGCCACCACTTGACACCATGGAAACACCT
1 ACTCAACCACCACTTGACACCAT-GAAACACCT
** *
32624 ACTCAAATACCACTTAACACCAT
1 ACTCAACCACCACTTGACACCAT
32647 CGTCATACCT
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
32 1 0.02
33 46 0.98
ACGTcount: A:0.36, C:0.37, G:0.08, T:0.19
Consensus pattern (32 bp):
ACTCAACCACCACTTGACACCATGAAACACCT
Found at i:37434 original size:20 final size:21
Alignment explanation
Indices: 37368--37436 Score: 95
Period size: 21 Copynumber: 3.3 Consensus size: 21
37358 CCACTTCATT
37368 TCTTTTTGTCCAAGTTACTTC
1 TCTTTTTGTCCAAGTTACTTC
*
37389 TCTTTTTGTCCAAGTTGCTTC
1 TCTTTTTGTCCAAGTTACTTC
* * *
37410 TCTTTTTGTCTAACTCACTTC
1 TCTTTTTGTCCAAGTTACTTC
37431 -CTTTTT
1 TCTTTTT
37437 TCTTTGCGAG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 6 0.14
21 37 0.86
ACGTcount: A:0.12, C:0.25, G:0.09, T:0.55
Consensus pattern (21 bp):
TCTTTTTGTCCAAGTTACTTC
Found at i:40119 original size:22 final size:23
Alignment explanation
Indices: 40093--40143 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 23
40083 ATAGGGCAGA
*
40093 GGGAATCAATACCCCC-TTGAAG
1 GGGAACCAATACCCCCTTTGAAG
* * *
40115 GGGAACCGATTCCCCCTTTGCAG
1 GGGAACCAATACCCCCTTTGAAG
40138 GGGAAC
1 GGGAAC
40144 TGATTCCCCT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
22 13 0.54
23 11 0.46
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.18
Consensus pattern (23 bp):
GGGAACCAATACCCCCTTTGAAG
Found at i:40153 original size:22 final size:23
Alignment explanation
Indices: 40104--40152 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
40094 GGAATCAATA
40104 CCCCC-TTGAAGGGGAACCGATT
1 CCCCCTTTGAAGGGGAACCGATT
* *
40126 CCCCCTTTGCAGGGGAACTGATT
1 CCCCCTTTGAAGGGGAACCGATT
40149 CCCC
1 CCCC
40153 TAGGGGAATC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 5 0.21
23 19 0.79
ACGTcount: A:0.18, C:0.37, G:0.24, T:0.20
Consensus pattern (23 bp):
CCCCCTTTGAAGGGGAACCGATT
Found at i:46788 original size:14 final size:14
Alignment explanation
Indices: 46769--46834 Score: 57
Period size: 14 Copynumber: 4.6 Consensus size: 14
46759 ATATATGATA
46769 ATGTGATATAAGCT
1 ATGTGATATAAGCT
46783 ATGTGATAT-AGTCT
1 ATGTGATATAAG-CT
46797 ATGTGACTATGTTAA-C-
1 ATGTGA-TA---TAAGCT
*
46813 ATGTGATATAATCT
1 ATGTGATATAAGCT
46827 ATGTGATA
1 ATGTGATA
46835 CTGAACTATA
Statistics
Matches: 44, Mismatches: 0, Indels: 16
0.73 0.00 0.27
Matches are distributed among these distances:
12 3 0.07
13 3 0.07
14 25 0.57
15 4 0.09
16 6 0.14
17 1 0.02
18 1 0.02
19 1 0.02
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (14 bp):
ATGTGATATAAGCT
Found at i:46801 original size:44 final size:44
Alignment explanation
Indices: 46750--46834 Score: 118
Period size: 44 Copynumber: 1.9 Consensus size: 44
46740 TGTTTCATGA
46750 TCTATGTGAATATATGATA-ATGTGATATAAGCTATGTGATATAG
1 TCTATGTGAATATATGA-ACATGTGATATAAGCTATGTGATATAG
* * * *
46794 TCTATGTGACTATGTTAACATGTGATATAATCTATGTGATA
1 TCTATGTGAATATATGAACATGTGATATAAGCTATGTGATA
46835 CTGAACTATA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
43 1 0.03
44 35 0.97
ACGTcount: A:0.34, C:0.07, G:0.19, T:0.40
Consensus pattern (44 bp):
TCTATGTGAATATATGAACATGTGATATAAGCTATGTGATATAG
Found at i:46974 original size:23 final size:23
Alignment explanation
Indices: 46941--47052 Score: 136
Period size: 23 Copynumber: 4.9 Consensus size: 23
46931 GTCGAGGGTT
*
46941 CTACGCGGTCCTTCGGGACAATA
1 CTACGTGGTCCTTCGGGACAATA
* * *
46964 CTACGTTGTCCTTCGGGACATTT
1 CTACGTGGTCCTTCGGGACAATA
* *
46987 CTACGTGGTCCTTCGGGACATTT
1 CTACGTGGTCCTTCGGGACAATA
47010 CTACGTGGTCCTTCGGGACAA-A
1 CTACGTGGTCCTTCGGGACAATA
* *
47032 TCTATGTGGTCCTTCAGGACA
1 -CTACGTGGTCCTTCGGGACA
47053 TTCTATGTGG
Statistics
Matches: 79, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
23 79 1.00
ACGTcount: A:0.18, C:0.27, G:0.25, T:0.30
Consensus pattern (23 bp):
CTACGTGGTCCTTCGGGACAATA
Found at i:47053 original size:46 final size:45
Alignment explanation
Indices: 46940--47062 Score: 156
Period size: 46 Copynumber: 2.7 Consensus size: 45
46930 AGTCGAGGGT
* * * **
46940 TCTACGCGGTCCTTCGGGACAATACTACGTTGTCCTTCGGGACATT
1 TCTACGTGGTCCTTCGGGAC-ATTCTACGTGGTCCTTCGGGACAAA
46986 TCTACGTGGTCCTTCGGGACATTTCTACGTGGTCCTTCGGGACAAA
1 TCTACGTGGTCCTTCGGGACA-TTCTACGTGGTCCTTCGGGACAAA
* * *
47032 TCTATGTGGTCCTTCAGGACATTCTATGTGG
1 TCTACGTGGTCCTTCGGGACATTCTACGTGG
47063 CACTTCAGTG
Statistics
Matches: 68, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
45 10 0.15
46 58 0.85
ACGTcount: A:0.17, C:0.25, G:0.25, T:0.33
Consensus pattern (45 bp):
TCTACGTGGTCCTTCGGGACATTCTACGTGGTCCTTCGGGACAAA
Found at i:47239 original size:15 final size:15
Alignment explanation
Indices: 47210--47244 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
47200 TGTTTTGCTT
*
47210 TATGA-AATGTATGA
1 TATGATAATATATGA
47224 TATGATAATATATGA
1 TATGATAATATATGA
47239 TATGAT
1 TATGAT
47245 GTTTTACAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.43, C:0.00, G:0.17, T:0.40
Consensus pattern (15 bp):
TATGATAATATATGA
Found at i:47348 original size:2 final size:2
Alignment explanation
Indices: 47341--47392 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
47331 GATGATGATG
47341 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
47383 AT AT AT AT AT
1 AT AT AT AT AT
47393 GCACTTATGC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:47350 original size:21 final size:21
Alignment explanation
Indices: 47309--47352 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
47299 ACTGTGATTA
*
47309 TGATAATGATGTTAATAATAT
1 TGATAATGATGATAATAATAT
*
47330 TGATGATGATGATATATATATAT
1 TGATAATGATGATA-ATA-ATAT
47353 ATATATATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 12 0.63
22 3 0.16
23 4 0.21
ACGTcount: A:0.41, C:0.00, G:0.16, T:0.43
Consensus pattern (21 bp):
TGATAATGATGATAATAATAT
Found at i:60093 original size:22 final size:19
Alignment explanation
Indices: 60068--60107 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 19
60058 GTAAAAGAAT
60068 ATAAATAAAATATAGGATAAAG
1 ATAAA-AAAA-ATA-GATAAAG
60090 ATAAAAAAAATAGATAAA
1 ATAAAAAAAATAGATAAA
60108 TAAATGAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 3 0.17
21 4 0.22
22 5 0.28
ACGTcount: A:0.70, C:0.00, G:0.10, T:0.20
Consensus pattern (19 bp):
ATAAAAAAAATAGATAAAG
Found at i:60697 original size:33 final size:33
Alignment explanation
Indices: 60660--60722 Score: 117
Period size: 33 Copynumber: 1.9 Consensus size: 33
60650 ATAGTAGAAC
60660 TCTATCCTATTTTTAGGAATTTGAATCCTAAAT
1 TCTATCCTATTTTTAGGAATTTGAATCCTAAAT
*
60693 TCTATCCTATTTTTAGGAGTTTGAATCCTA
1 TCTATCCTATTTTTAGGAATTTGAATCCTA
60723 GTAGGAAGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.27, C:0.16, G:0.11, T:0.46
Consensus pattern (33 bp):
TCTATCCTATTTTTAGGAATTTGAATCCTAAAT
Found at i:61854 original size:103 final size:106
Alignment explanation
Indices: 61463--62813 Score: 1858
Period size: 104 Copynumber: 13.0 Consensus size: 106
61453 GGATTATTCC
* * *
61463 GAGTCCAATATCCTCCG-TCGTGAAGTTGAAATTGGCTCTGGAATCGGGAA-TTGTTTGTTGACA
1 GAGTCCAATATCCTTCGCT-GTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACA
* * *
61526 ACCAGTC-GTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTC
65 ACCAG-CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
** *
61568 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCCAAAATTGGGAAATTGTTTTGTTGACA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTG-TTTGTTGACA
** * *
61633 ACCAGCGGTCCCTTCGTTTTGAAGTTGAACTTGCGTCGTCTC
65 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
61675 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATT-GCT-TGAAATTGGGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
61738 CCAGCGGTCCCTTCGTCGTGAAGTTG-ACTTGCG-T-TCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
61776 GAGTCCAATATCATTCGCTGTGTGAAGTTGAAATTGGCTCTG-AATTGAGAAGTTGTTT-TTGAT
1 GAGTCCAATATCCTTCGC--TGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGAC
* *
61839 AACCAGCGGTCCCTTCATCGTGAAGTTAAACTTGCGTTGTCT-
64 AACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
61881 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCCGAAATTGGGAAATTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
61946 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT-
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* ** *
61986 G-GTCCAATATCTTTCATTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
62050 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* **
62091 GAGTCC-ATATCCTTCGTTGTGAAGTTG-AATTGGCTCCAAAATTGGGAA-TTG-TTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
* *
62152 CCAGCGGTCCCTTCATCGTGAAGTTGAACTTGAGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
62193 GAGTCCAATAT-CTTTGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
*
62257 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCT-
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
62297 -CGTCC-ATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAA-TTGTTTGTTG--AA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
* * *
62357 CCA-TGGTCCCTTTGTCGTGAAGTTGAACTTGTGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
62397 GAGTCC-ATATCCTTCGCTGTGAAATTG-AATTGGCTCCGAAATTGGGAAATTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
* *
62460 CCAACGATCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
62501 GAGTCCAATATCTTTCGCTGTGAA-TTGAAATTGGCTCTGAAATT-AG-AGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
*
62563 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
62604 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTTTG-AATTGAG-AGTTGTTTGTTGACAG
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
* * * *** *
62667 TCAGCCGCCCCTTCG-CTGTGAAGTT-AAGCTTGTACTGTCTT
66 CCAGCGGTCCCTTCGTC-GTGAAGTTGAA-CTTGCGTTGTCTG
*
62708 GA-TCCAATATCCTTCGCTGTGAAG-TGAAATTGGCTCTGAAATTGGGAA-TTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
* * *
62770 CCAGCGATCCCTTCATCGTGAAGTTGAACTTGTGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
62811 GAG
1 GAG
62814 AGAAACTGTC
Statistics
Matches: 1119, Mismatches: 90, Indels: 75
0.87 0.07 0.06
Matches are distributed among these distances:
99 32 0.03
100 24 0.02
101 54 0.05
102 96 0.09
103 297 0.27
104 302 0.27
105 219 0.20
106 15 0.01
107 80 0.07
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.34
Consensus pattern (106 bp):
GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
Found at i:62022 original size:207 final size:211
Alignment explanation
Indices: 61463--62813 Score: 1875
Period size: 207 Copynumber: 6.5 Consensus size: 211
61453 GGATTATTCC
* * *
61463 GAGTCCAATATCCTCCG-TCGTGAAGTTGAAATTGGCTCTGGAATCGGGAATTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCT-GTGAAGTTGAAATTGGCTCTGAAATTGGGAATTGTTTGTTGACAA
* * *
61527 CCAGTC-GTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGA
65 CCAG-CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGA
** * * **
61591 AGTTGAAATTGGCTCCAAAATTGGGAAATTGTTTTGTTGACAACCAGCGGTCCCTTCGTTTTGAA
129 AGTTGAAATTGGCTCTGAAATTGAGAAGTTG-TTTGTTGACAACCAGCGGTCCCTTCGTCGTGAA
* *
61656 GTTGAACTTGCGTCGTCTC
193 GTTGAACTTGCGTTGTCTG
61675 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATT-GCT-TGAAATTGGGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAA-TTGTTTGTTGACAA
*
61738 CCAGCGGTCCCTTCGTCGTGAAGTTG-ACTTGCG-T-TCTGGAGTCCAATATCATTCGCTGTGTG
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGC--TGTG
* *
61800 AAGTTGAAATTGGCTCTG-AATTGAGAAGTTGTTT-TTGATAACCAGCGGTCCCTTCATCGTGAA
128 AAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAA
*
61863 GTTAAACTTGCGTTGTCT-
193 GTTGAACTTGCGTTGTCTG
*
61881 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCCGAAATTGGGAAATTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGG-AATTGTTTGTTGACAA
* **
61946 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT-G-GTCCAATATCTTTCATTGTGAA
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAA
62009 GTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGT
130 GTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGT
62074 TGAACTTGCGTTGTCTG
195 TGAACTTGCGTTGTCTG
* **
62091 GAGTCC-ATATCCTTCGTTGTGAAGTTG-AATTGGCTCCAAAATTGGGAATTG-TTGTTGACAAC
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAATTGTTTGTTGACAAC
* * *
62153 CAGCGGTCCCTTCATCGTGAAGTTGAACTTGAGTTGTCTGGAGTCCAATAT-CTTTGCTGTGAAG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAG
*
62217 TTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTT
131 TTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTT
*
62282 GAACTTGCATTGTCT-
196 GAACTTGCGTTGTCTG
* *
62297 -CGTCC-ATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAATTGTTTGTTG--AAC
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAATTGTTTGTTGACAAC
* * * *
62358 CA-TGGTCCCTTTGTCGTGAAGTTGAACTTGTGTTGTCTGGAGTCC-ATATCCTTCGCTGTGAAA
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAG
* * * * *
62421 TTG-AATTGGCTCCGAAATTGGGAAATTGTTTGTTGACAACCAACGATCCCTTCGTCGTGAAGTT
131 TTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTT
62485 GAACTTGCGTTGTCTG
196 GAACTTGCGTTGTCTG
* * *
62501 GAGTCCAATATCTTTCGCTGTGAA-TTGAAATTGGCTCTGAAATT-AGAGTTGTTTGTTGACAAC
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAATTGTTTGTTGACAAC
*
62564 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTTGAGTCCAATATCCTTCGCTGTGAAG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAG
* ** * *
62629 TTGAAATTGGCTTTG-AATTGAG-AGTTGTTTGTTGACAGTCAGCCGCCCCTTCG-CTGTGAAGT
131 TTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTC-GTGAAGT
*** *
62691 T-AAGCTTGTACTGTCTT
195 TGAA-CTTGCGTTGTCTG
*
62708 GA-TCCAATATCCTTCGCTGTGAAG-TGAAATTGGCTCTGAAATTGGGAATTGTTTATTGACAAC
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAATTGTTTGTTGACAAC
* * *
62771 CAGCGATCCCTTCATCGTGAAGTTGAACTTGTGTTGTCTGGAG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAG
62814 AGAAACTGTC
Statistics
Matches: 1028, Mismatches: 80, Indels: 67
0.87 0.07 0.06
Matches are distributed among these distances:
203 75 0.07
204 66 0.06
205 53 0.05
206 165 0.16
207 302 0.29
208 141 0.14
209 107 0.10
210 45 0.04
211 43 0.04
212 30 0.03
213 1 0.00
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.34
Consensus pattern (211 bp):
GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAATTGTTTGTTGACAAC
CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAG
TTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTT
GAACTTGCGTTGTCTG
Found at i:62866 original size:36 final size:36
Alignment explanation
Indices: 62814--62944 Score: 126
Period size: 36 Copynumber: 3.7 Consensus size: 36
62804 TTGTCTGGAG
*
62814 AGAA-ACTGTCAT-AAGGGAGACAAAATTTGTTTCAA
1 AGAAGACTGTC-TCAAGCGAGACAAAATTTGTTTCAA
* * *
62849 GGAAGACTGTCTCAAGGGAGACGAAATTTGTTTCAA
1 AGAAGACTGTCTCAAGCGAGACAAAATTTGTTTCAA
* * * *
62885 AGAAAAATATCTCAAGCGAGA-TAAATCTTGTTT-AA
1 AGAAGACTGTCTCAAGCGAGACAAAAT-TTGTTTCAA
**
62920 ATTAGACTGTCTCAAGCGAGACAAA
1 AGAAGACTGTCTCAAGCGAGACAAA
62945 TTTATATTGG
Statistics
Matches: 78, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
35 26 0.33
36 52 0.67
ACGTcount: A:0.40, C:0.14, G:0.21, T:0.25
Consensus pattern (36 bp):
AGAAGACTGTCTCAAGCGAGACAAAATTTGTTTCAA
Found at i:63727 original size:21 final size:22
Alignment explanation
Indices: 63669--63742 Score: 82
Period size: 21 Copynumber: 3.5 Consensus size: 22
63659 TTGTGTTTGG
*
63669 TCAAAGGTTTGGCATTTGATGC
1 TCAAAGGTTTGTCATTTGATGC
* * *
63691 TCAAATGTTGGT-ATTTGATGT
1 TCAAAGGTTTGTCATTTGATGC
*
63712 TC-AAGGTTTGTCATTTTA-GC
1 TCAAAGGTTTGTCATTTGATGC
63732 TCAAAGGTTTG
1 TCAAAGGTTTG
63743 ATGGGGTAGC
Statistics
Matches: 42, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
20 10 0.24
21 23 0.55
22 9 0.21
ACGTcount: A:0.23, C:0.11, G:0.24, T:0.42
Consensus pattern (22 bp):
TCAAAGGTTTGTCATTTGATGC
Found at i:64357 original size:25 final size:25
Alignment explanation
Indices: 64325--64382 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
64315 TGCTTTTTTT
* *
64325 TTTCCTTTTTCTTTTTGATTTTGTTC
1 TTTCTTTTTTC-TTTTGATTTTCTTC
* *
64351 TTTCTTTTTTCTTTTGTTTTTCTTT
1 TTTCTTTTTTCTTTTGATTTTCTTC
64376 TTTCTTT
1 TTTCTTT
64383 GTTTTTGATT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 18 0.64
26 10 0.36
ACGTcount: A:0.02, C:0.14, G:0.05, T:0.79
Consensus pattern (25 bp):
TTTCTTTTTTCTTTTGATTTTCTTC
Found at i:64364 original size:11 final size:10
Alignment explanation
Indices: 64319--64388 Score: 52
Period size: 11 Copynumber: 6.5 Consensus size: 10
64309 TGCATGTGCT
64319 TTTTTTTTTCC
1 TTTTTTTTT-C
64330 TTTTTCTTTT-
1 TTTTT-TTTTC
* *
64340 TGATTTTGTTC
1 T-TTTTTTTTC
64351 TTTCTTTTTTC
1 TTT-TTTTTTC
64362 TTTTGTTTTTC
1 TTTT-TTTTTC
*
64373 TTTTTTCTTTG
1 TTTTTT-TTTC
64384 TTTTT
1 TTTTT
64389 GATTGGATCT
Statistics
Matches: 48, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
10 8 0.17
11 36 0.75
12 4 0.08
ACGTcount: A:0.01, C:0.11, G:0.06, T:0.81
Consensus pattern (10 bp):
TTTTTTTTTC
Found at i:64379 original size:18 final size:18
Alignment explanation
Indices: 64317--64388 Score: 85
Period size: 19 Copynumber: 4.0 Consensus size: 18
64307 TTTGCATGTG
*
64317 CTTTTTT-TTTTCCTTTTT
1 CTTTTTTCTTTT-GTTTTT
**
64335 CTTTTTGATTTTGTTCTTT
1 CTTTTTTCTTTTGTT-TTT
64354 CTTTTTTCTTTTGTTTTT
1 CTTTTTTCTTTTGTTTTT
64372 CTTTTTTC-TTTGTTTTT
1 CTTTTTTCTTTTGTTTTT
64389 GATTGGATCT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
17 9 0.19
18 19 0.40
19 20 0.42
ACGTcount: A:0.01, C:0.12, G:0.06, T:0.81
Consensus pattern (18 bp):
CTTTTTTCTTTTGTTTTT
Done.