genome.fa.s5657.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005657.1 Hibiscus syriacus cultivar Beakdansim tig00013227_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60438

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2046--2098	16	3.2	16	72	5	52	41	26	1	30	1.66
2425--2493	23	3.0	23	84	0	93	26	24	27	21	1.99
2509--2720	103	2.1	103	95	0	379	37	22	14	25	1.92
5528--5681	64	2.4	64	78	2	166	27	18	18	35	1.94
9396--9430	18	1.9	18	94	0	61	31	34	20	14	1.92
9395--9517	22	5.8	22	86	4	155	29	33	21	15	1.94
9395--9531	44	3.3	43	84	9	155	29	32	21	16	1.95
9615--9667	28	1.9	27	84	3	70	32	22	5	39	1.78
18101--18128	3	9.3	3	100	0	56	67	0	0	32	0.91
19938--20128	54	3.6	50	71	14	134	19	22	15	42	1.89
19946--20170	105	2.1	105	86	5	306	18	20	16	44	1.87
20208--20464	57	4.6	57	82	4	267	19	19	17	43	1.88
20267--20496	57	4.3	52	84	6	230	18	18	17	44	1.87
20300--20496	51	3.7	49	83	8	110	19	18	18	43	1.89
20379--20575	51	3.9	51	80	0	214	16	20	18	44	1.87
25326--25432	34	3.1	33	78	14	85	33	0	2	62	1.16
25359--25437	34	2.4	34	85	8	101	36	1	0	62	1.04
25578--25631	17	3.2	17	72	0	54	31	0	3	64	1.11
27161--27208	21	2.3	21	85	0	60	25	39	12	22	1.89
27212--27305	21	4.5	21	84	10	113	18	32	26	22	1.97
27945--27974	14	2.1	14	93	0	51	60	10	0	30	1.30
28230--28985	128	5.9	128	91	1	1248	32	19	24	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29056--29095	8	5.1	8	81	6	55	37	27	0	35	1.57
32098--32147	18	2.8	18	77	14	59	52	0	2	46	1.12
38866--38933	31	2.2	31	83	0	82	48	2	4	44	1.38
38879--38984	31	3.5	29	82	5	113	45	3	3	47	1.39
43076--43120	18	2.5	18	82	7	56	51	2	2	44	1.26
44002--44052	2	25.5	2	100	0	102	50	0	0	49	1.00
44894--44923	15	2.0	15	93	0	51	60	30	0	10	1.30
47656--47693	2	19.0	2	100	0	76	50	0	0	50	1.00
51087--51155	35	1.9	36	91	2	113	28	18	18	33	1.95
56584--56632	22	2.2	22	85	7	64	20	14	20	44	1.86

Tables:   1

The End!