genome.fa.s5658.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005658.1 Hibiscus syriacus cultivar Beakdansim tig00013230_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104511

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4855--4903	20	2.5	20	82	0	62	20	28	26	24	1.99
5258--5313	22	2.6	22	80	8	62	23	30	26	19	1.98
7146--7203	21	2.7	21	81	7	64	15	1	25	56	1.49
10719--10886	84	2.0	84	96	2	311	42	18	13	26	1.87
11646--11684	6	6.5	6	100	0	78	48	0	51	0	1.00
12266--12303	20	1.9	19	89	5	58	26	0	13	60	1.33
14344--14394	16	3.2	16	75	5	50	47	23	17	11	1.81
14918--14988	31	2.3	31	80	0	79	35	29	16	18	1.93
15240--15285	22	2.2	20	88	7	65	34	0	0	65	0.93
16151--16190	20	2.0	20	95	0	71	25	12	15	47	1.80
17669--17702	8	4.2	8	88	0	50	20	0	0	79	0.73
17815--18028	52	4.1	52	80	5	220	26	8	12	52	1.68
17866--18024	51	3.1	50	78	12	178	23	11	12	52	1.72
18217--18265	20	2.5	20	79	0	62	32	18	22	26	1.97
18283--18317	19	1.9	18	88	11	54	22	20	17	40	1.92
18436--18508	22	3.3	22	83	7	85	24	43	10	20	1.84
18814--18876	20	3.2	20	90	2	101	11	17	19	52	1.74
20618--20667	21	2.4	21	80	6	57	20	12	38	30	1.88
21039--21107	21	3.3	21	82	8	86	24	36	20	18	1.95
21009--21127	42	2.8	42	85	0	157	21	36	18	24	1.95
22470--22601	64	2.1	64	89	0	201	28	3	16	51	1.59
25259--25327	23	3.0	23	82	0	84	21	27	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32078--32130	23	2.3	23	86	0	70	20	28	22	28	1.99
36680--36760	21	3.9	21	90	0	126	40	20	18	19	1.91
36724--36825	21	5.0	21	85	7	111	41	21	20	16	1.90
36672--36821	42	3.6	42	81	7	137	42	19	21	17	1.90
36751--36825	20	3.7	20	89	1	114	44	20	22	13	1.86
37067--37091	13	1.9	13	100	0	50	16	16	16	52	1.76
42184--42441	108	2.4	108	85	3	356	37	22	19	19	1.94
42194--42459	36	7.4	36	84	2	311	36	22	19	21	1.95
42841--44004	51	22.5	51	85	5	1345	32	18	24	23	1.97
43934--44192	110	2.4	108	87	5	317	28	15	28	27	1.96
43968--44192	55	4.1	55	88	1	337	27	13	29	28	1.94
49295--49354	24	2.5	24	88	0	93	40	18	16	25	1.91
50102--50140	15	2.5	15	83	4	51	66	0	5	28	1.12
50270--50324	18	2.8	19	81	10	67	36	10	20	32	1.87
50317--50425	20	5.4	20	73	8	71	33	11	24	29	1.91
50297--50428	40	3.3	40	78	5	142	34	11	23	31	1.90
50560--50613	26	2.1	26	89	0	81	31	7	20	40	1.80
50616--50729	51	2.3	50	86	4	158	29	13	12	44	1.80
53358--53407	25	2.0	26	84	11	68	50	4	10	36	1.55
54665--54711	21	2.3	20	85	14	69	40	0	0	59	0.97
54665--54743	26	3.3	25	80	16	87	40	1	1	56	1.15
54883--54942	24	2.6	24	82	12	81	43	1	0	55	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59333--59576	40	6.1	40	69	7	138	27	21	14	36	1.92
59331--59576	80	3.1	79	82	4	287	27	21	14	36	1.92
59579--59658	19	4.2	19	83	0	88	36	21	13	28	1.92
59649--59757	19	5.6	19	80	6	119	43	21	9	26	1.82
59646--59757	40	2.9	38	85	5	143	41	20	8	28	1.82
59734--59781	23	2.2	21	88	7	69	58	20	4	16	1.55
59818--59861	19	2.3	19	80	4	52	45	15	6	31	1.73
59649--59860	20	10.5	19	72	11	127	43	18	9	27	1.82
65914--66144	40	5.8	39	70	10	132	29	21	14	34	1.93
65906--66157	80	3.2	80	86	1	355	27	21	15	35	1.93
66159--66196	20	1.9	20	88	0	58	44	18	18	18	1.87
66190--66246	19	3.0	19	78	0	69	35	17	14	33	1.90
66257--66426	19	8.7	19	79	7	171	42	22	7	27	1.80
66257--66424	20	8.6	19	80	7	185	42	22	7	27	1.81
66251--66426	39	4.5	40	84	4	200	40	21	8	28	1.83
68052--68138	42	2.1	42	91	0	138	29	9	9	51	1.65
68840--68882	14	3.2	13	81	18	52	55	0	2	41	1.12
70967--71081	59	1.9	59	89	0	176	40	8	14	36	1.77
78635--78683	21	2.5	20	83	6	55	34	10	0	55	1.34
78635--78674	21	1.9	21	89	0	62	32	7	0	60	1.25
79580--79612	11	3.1	11	91	4	50	72	15	12	0	1.12
79605--79660	21	2.8	20	83	5	76	75	0	25	0	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79627--79665	15	2.5	17	84	16	57	79	0	20	0	0.73
80653--80720	23	3.0	23	95	0	118	23	26	27	22	1.99
81949--82109	64	2.5	62	81	10	173	27	21	18	33	1.96
85332--85389	23	2.5	23	94	0	89	22	27	29	20	1.99
86622--86782	64	2.5	63	82	10	175	26	21	18	34	1.96
88138--88206	33	2.0	33	91	5	111	33	5	0	60	1.20
88151--88203	16	3.2	16	75	15	63	32	7	0	60	1.25
88244--88269	13	2.0	13	100	0	52	23	7	0	69	1.14
91714--91768	21	2.6	21	88	0	83	23	18	23	34	1.96
92737--92837	32	3.2	32	77	5	96	37	14	16	30	1.89
93040--93106	18	3.7	18	95	0	125	16	22	32	28	1.95
95229--95264	18	2.0	18	88	0	54	30	33	16	19	1.94
95563--95596	16	2.2	15	89	5	50	47	20	0	32	1.51
99162--99212	19	2.7	19	93	0	84	29	13	29	27	1.94
99097--99276	83	2.2	83	81	7	195	33	16	22	27	1.95
99742--99963	103	2.2	103	92	1	374	26	13	23	36	1.92
99971--100023	23	2.3	23	80	6	63	22	26	24	26	2.00

Tables:   1

The End!