genome.fa.s5659.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005659.1 Hibiscus syriacus cultivar Beakdansim tig00013231_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115113

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
364--388	2	12.5	2	100	0	50	52	0	0	48	1.00
831--895	3	22.3	3	76	17	66	72	0	0	27	0.85
835--898	19	3.3	19	81	14	69	71	0	0	28	0.86
831--898	28	2.3	31	83	16	92	72	0	0	27	0.85
6609--6662	23	2.4	22	82	14	65	27	11	11	50	1.72
15106--15143	15	2.4	17	82	13	53	73	7	5	13	1.22
15102--15181	39	2.1	39	83	6	101	73	8	3	13	1.20
15110--15188	19	4.1	19	77	9	70	73	7	3	15	1.20
15669--15722	10	5.7	10	74	10	51	59	0	3	37	1.15
18220--18263	12	3.4	12	79	14	52	0	15	2	81	0.78
18230--18390	76	2.1	79	81	3	193	10	21	12	55	1.66
25393--25427	16	2.2	16	90	10	54	71	5	8	14	1.29
28713--28751	15	2.4	16	83	12	53	74	7	5	12	1.20
28713--28796	19	4.3	19	77	10	71	73	7	3	15	1.18
28818--28888	21	3.6	19	74	12	63	74	2	4	18	1.10
28982--29022	21	2.0	20	85	4	55	53	2	24	19	1.57
35185--35432	130	1.9	130	93	0	424	35	14	13	36	1.85
35199--35463	130	2.0	129	81	4	309	38	12	13	34	1.83
35896--35932	15	2.4	16	86	13	51	59	5	2	32	1.34
36055--36097	21	2.0	21	100	0	86	39	0	13	46	1.44
36066--36151	35	2.5	35	84	0	100	37	1	20	40	1.61
41510--41579	19	3.6	20	80	5	81	51	17	15	15	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41929--41993	22	3.0	21	82	4	60	23	16	41	18	1.90
41936--41993	22	2.6	22	86	0	89	20	18	41	18	1.91
42141--42230	20	4.5	20	74	9	76	20	12	28	38	1.88
43603--43664	27	2.3	27	100	0	124	33	19	11	35	1.87
48658--48703	2	23.0	2	100	0	92	50	0	0	50	1.00
49853--49885	5	6.6	5	100	0	66	81	0	18	0	0.68
51341--51440	35	2.7	35	81	9	103	39	11	16	34	1.83
51796--51875	33	2.5	32	83	4	97	32	3	5	58	1.37
51817--51866	21	2.4	21	78	21	52	32	0	6	62	1.20
51939--52055	18	6.6	17	69	19	62	22	7	2	67	1.28
57862--57886	3	8.3	3	100	0	50	68	0	0	32	0.90
58296--58335	18	2.3	18	86	4	55	22	10	47	20	1.79
64023--64218	85	2.3	85	83	7	245	32	19	21	25	1.97
64029--64218	43	4.5	42	86	5	231	33	19	21	25	1.97
65601--65756	78	2.0	78	100	0	312	38	15	17	28	1.91
66516--66634	6	20.3	6	93	5	208	33	50	15	0	1.45
69935--69977	11	3.9	11	81	0	59	53	20	11	13	1.71
69930--69976	22	2.1	22	92	0	76	53	21	12	12	1.72
70867--70947	35	2.3	36	91	2	128	44	22	1	32	1.61
70867--70964	36	2.8	35	84	6	126	42	24	2	30	1.66
71418--71714	148	2.0	148	89	2	454	47	7	7	37	1.60
73229--73309	35	2.3	36	85	6	103	44	19	1	34	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73786--74073	145	2.0	146	89	6	442	47	9	6	36	1.62
75598--75676	35	2.2	36	90	2	124	44	18	1	35	1.59
75598--75692	36	2.7	36	86	4	113	42	21	2	34	1.65
76155--76446	148	2.0	147	90	2	460	47	9	6	36	1.61
85861--86193	111	3.0	111	96	0	603	44	11	8	36	1.70
86467--86591	50	2.5	49	84	1	160	24	27	32	16	1.96
86809--86985	60	2.9	60	80	5	196	33	19	5	41	1.75
103141--103181	21	1.9	22	85	5	57	46	0	7	46	1.30
110373--110457	39	2.2	39	81	10	93	42	7	5	44	1.55

Tables:   1

The End!