Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000566.1 Hibiscus syriacus cultivar Beakdansim tig00001106_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100667

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2072--2103
15
2.1
15
94
0
55
40
18
18
21
1.91
4379--4581
103
2.0
103
88
3
304
27
13
14
44
1.82
6402--6427
12
2.2
12
100
0
52
23
23
23
30
1.99
14363--14433
6
11.8
6
84
0
70
28
38
30
2
1.71
14366--14429
24
2.7
24
95
0
110
26
40
29
3
1.71
21742--21816
36
2.1
37
92
2
125
32
32
12
24
1.91
28395--28448
21
2.6
21
84
0
72
24
11
44
20
1.83
28437--28589
21
7.3
21
96
0
279
32
9
42
15
1.79
30724--30808
21
4.0
21
85
0
71
28
10
42
18
1.84
30755--30865
21
5.3
21
92
0
186
32
10
41
15
1.82
48014--48038
3
8.3
3
100
0
50
68
0
0
32
0.90
50507--50546
20
2.0
20
95
0
71
20
12
20
47
1.81
51002--51077
36
2.1
37
85
9
113
30
2
38
28
1.71
51011--51079
36
1.9
35
94
2
120
33
2
36
27
1.72
52970--53053
41
2.1
41
90
2
134
20
19
21
39
1.93
52988--53053
19
3.3
19
66
12
51
18
19
21
40
1.91
53640--53738
6
18.4
5
96
3
119
0
19
53
27
1.45
54131--54155
13
1.9
13
100
0
50
40
0
0
60
0.97
54377--54431
24
2.3
24
96
0
101
29
32
21
16
1.95
56119--56157
15
2.5
15
87
8
51
51
2
0
46
1.14
63926--63983
25
2.2
27
76
14
68
58
1
6
32
1.35
66732--66756
3
8.3
3
100
0
50
64
0
36
0
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67491--67550
29
2.1
29
81
9
70
40
5
20
35
1.74
67465--67578
60
1.9
60
82
7
142
41
5
19
34
1.74
68197--68244
20
2.4
20
100
0
96
22
20
16
39
1.92
69739--69776
20
1.9
20
89
10
60
50
0
5
44
1.24
69977--70011
2
17.5
2
100
0
70
51
0
0
48
1.00
76122--76166
21
2.1
21
83
0
54
33
28
22
15
1.95
76848--76935
31
2.8
31
80
10
99
28
17
21
32
1.96
76864--76953
31
2.9
31
83
1
92
26
15
24
33
1.95
76932--76996
29
2.2
30
86
2
87
16
18
30
33
1.94
80288--80332
21
2.1
21
91
0
72
33
28
22
15
1.95
81012--81119
31
3.5
31
79
3
103
24
18
22
35
1.96
81034--81140
31
3.5
30
79
6
90
24
18
24
32
1.97
82540--82730
41
4.6
41
69
12
122
34
18
16
30
1.94
82558--82813
124
2.1
124
80
4
275
33
18
17
30
1.94
83056--83217
81
2.0
81
86
2
227
13
35
22
29
1.92
85864--85897
17
2.0
17
88
0
50
61
2
0
35
1.11
86053--86185
34
4.1
30
69
12
77
36
5
9
48
1.59
86048--86550
198
2.5
195
87
3
704
37
5
10
45
1.63
91081--91211
66
2.0
65
93
1
226
28
19
9
43
1.81
91933--92048
43
2.7
43
84
0
133
37
24
12
25
1.91
94077--94103
2
13.5
2
100
0
54
48
0
0
51
1.00

Tables:   1

The End!