Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005660.1 Hibiscus syriacus cultivar Beakdansim tig00013232_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 80990
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.32
Found at i:10269 original size:19 final size:20
Alignment explanation
Indices: 10242--10289 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
10232 ATATTATGCT
*
10242 TGAAGAAAAAATAA-AAAAA
1 TGAAAAAAAAATAATAAAAA
*
10261 TG-AAAAAAAATAATAATAA
1 TGAAAAAAAAATAATAAAAA
10280 T-AAAAAAAAA
1 TGAAAAAAAAA
10290 GGATCAAGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
18 10 0.40
19 15 0.60
ACGTcount: A:0.79, C:0.00, G:0.06, T:0.15
Consensus pattern (20 bp):
TGAAAAAAAAATAATAAAAA
Found at i:10270 original size:18 final size:19
Alignment explanation
Indices: 10242--10288 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 19
10232 ATATTATGCT
10242 TGAAGAAAAAATAA-AAAAA
1 TGAA-AAAAAATAATAAAAA
*
10261 TGAAAAAAAATAATAATAA
1 TGAAAAAAAATAATAAAAA
10280 T-AAAAAAAA
1 TGAAAAAAAA
10289 AGGATCAAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 17 0.65
19 9 0.35
ACGTcount: A:0.79, C:0.00, G:0.06, T:0.15
Consensus pattern (19 bp):
TGAAAAAAAATAATAAAAA
Found at i:11379 original size:114 final size:115
Alignment explanation
Indices: 10983--11435 Score: 802
Period size: 115 Copynumber: 4.0 Consensus size: 115
10973 TACCACGTTA
10983 TCATAGTAGAAATAAGAAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGG
1 TCATAGTAGAAATAAGAAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGG
11048 TTTGGTATGAACCCCAAAAACCAATCATTGGATTTGAAAGATGAATTTGC
66 TTTGGTATGAACCCCAAAAACCAATCATTGGATTTGAAAGATGAATTTGC
11098 TCATAGTAGAAATAAGAAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGG
1 TCATAGTAGAAATAAGAAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGG
11163 TTTGGTATGAACCCCAAAAACCAATCATTGGATTTGAAAGATGAATTTGC
66 TTTGGTATGAACCCCAAAAACCAATCATTGGATTTGAAAGATGAATTTGC
11213 TCATAGTAGAAATAAGAAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGG
1 TCATAGTAGAAATAAGAAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGG
* *
11278 TTTGGTATGAA-CCCTAAAACCAATCATTGGATTTGAAAAATGAATTTGC
66 TTTGGTATGAACCCCAAAAACCAATCATTGGATTTGAAAGATGAATTTGC
* *
11327 TCATAATAGAAATAAGGAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGG
1 TCATAGTAGAAATAAGAAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGG
* * * * * *
11392 TTCGGTAGGAACCAC-AAAACCAATCATTAGAATTAAAAGATGAA
66 TTTGGTATGAACCCCAAAAACCAATCATTGGATTTGAAAGATGAA
11436 CTGCATGATC
Statistics
Matches: 326, Mismatches: 11, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
114 133 0.41
115 193 0.59
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.32
Consensus pattern (115 bp):
TCATAGTAGAAATAAGAAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGG
TTTGGTATGAACCCCAAAAACCAATCATTGGATTTGAAAGATGAATTTGC
Found at i:11385 original size:229 final size:229
Alignment explanation
Indices: 10983--11435 Score: 800
Period size: 229 Copynumber: 2.0 Consensus size: 229
10973 TACCACGTTA
10983 TCATAGTAGAAATAAGAAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGG
1 TCATAGTAGAAATAAGAAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGG
* *
11048 TTTGGTATGAACCCCAAAAACCAATCATTGGATTTGAAAGATGAATTTGCTCATAGTAGAAATAA
66 TTTGGTATGAACCCCAAAAACCAATCATTGGATTTGAAAAATGAATTTGCTCATAATAGAAATAA
* * *
11113 GAAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCCC
131 GAAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTCGGTAGGAACCAC
* * *
11178 AAAAACCAATCATTGGATTTGAAAGATGAATTTGC
196 -AAAACCAATCATTAGAATTAAAAGATGAATTTGC
11213 TCATAGTAGAAATAAGAAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGG
1 TCATAGTAGAAATAAGAAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGG
*
11278 TTTGGTATGAA-CCCTAAAACCAATCATTGGATTTGAAAAATGAATTTGCTCATAATAGAAATAA
66 TTTGGTATGAACCCCAAAAACCAATCATTGGATTTGAAAAATGAATTTGCTCATAATAGAAATAA
*
11342 GGAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTCGGTAGGAACCAC
131 GAAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTCGGTAGGAACCAC
11407 AAAACCAATCATTAGAATTAAAAGATGAA
196 AAAACCAATCATTAGAATTAAAAGATGAA
11436 CTGCATGATC
Statistics
Matches: 213, Mismatches: 10, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
228 26 0.12
229 111 0.52
230 76 0.36
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.32
Consensus pattern (229 bp):
TCATAGTAGAAATAAGAAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGG
TTTGGTATGAACCCCAAAAACCAATCATTGGATTTGAAAAATGAATTTGCTCATAATAGAAATAA
GAAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTCGGTAGGAACCAC
AAAACCAATCATTAGAATTAAAAGATGAATTTGC
Found at i:12695 original size:113 final size:112
Alignment explanation
Indices: 12479--13769 Score: 1386
Period size: 113 Copynumber: 11.4 Consensus size: 112
12469 TTTTGTTTGA
* * * *
12479 AAGAAGAAATTCAGAATGAGAAGAATTTGTTCAACCTTTTGC-TAAATCCATCACTTGATGGATC
1 AAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTTGAATTCATCA-TTGATGGATC
* * *
12543 AGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGG
65 AGCATTACCAGATAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGG
* * * * *
12591 AAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGCTTGAGTTCATGATTCAATGGATC
1 AAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTTGAATTCATCATT-GATGGATC
* ** *
12656 AGCATTACCAGTTCGAGTTCATAATGAGAAGAACTCATCTGAAGAAAG
65 AGCATTACCAGATAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGG
* *
12704 AAAAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCATTTGATGGATC
1 AAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTTGAATTCATCA-TTGATGGATC
* * * *
12769 AACATTACCAGATATAGTTCATAATAAGAAGAACTCGTCATCTGAAGAAGA
65 AGCATTACCAGATAAAGTTCATAATGAGAAGAA--C-TCATCTGAAGAAGG
* * *
12820 AAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGC-TAAATCCATCACTTGATGGATC
1 AAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTTGAATTCATCA-TTGATGGATC
* * * *
12884 AGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTAAAGAAGG
65 AGCATTACCAGATAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGG
* * * * *
12932 AAGAATAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGCTTGAATTCATGATTCAATGGATC
1 AAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTTGAATTCATCATT-GATGGATC
* ** *
12997 AGCATTACCAGTTCGAGTTCATAATGAGAAGAACTCATCTGAAGAAAG
65 AGCATTACCAGATAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGG
* * *
13045 AAAAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCATTTGATGGATC
1 AAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTTGAATTCATCA-TTGATGGATC
* * * * *
13110 AACATTACCAGATATAGTTCATAATAAGAAGAACTCGTCATCTAAAGAAGA
65 AGCATTACCAGATAAAGTTCATAATGAGAAGAA--C-TCATCTGAAGAAGG
* * * *
13161 AAGAAGAAATTCATAATGAGAATAATTTGTTCAA-CTATTTGC-TAAATCCATCACTTGATGGAT
1 AAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCT-TTTGCTTGAATTCATCA-TTGATGGAT
* * *
13224 CAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT---GAA-G
64 CAGCATTACCAGATAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGG
* * * *
13269 AAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGCTTGAATTCATGATTCAATGGATC
1 AAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTTGAATTCATCATT-GATGGATC
* ** *
13334 AGCATTACCAGTTCGAGTTCATAATGAGAAGAACTCATCTGAAAAAGG
65 AGCATTACCAGATAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGG
* *
13382 AAGAAGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCATTTGATGGATC
1 AAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTTGAATTCATCA-TTGATGGATC
* * * * *
13447 AACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGA
65 AGCATTACCAGATAAAGTTCATAATGAGAAGAA--C-TCATCTGAAGAAGG
* * * *
13498 AAGAAGAAATTCATAATAAGAAGAATTTGTTCAACCTTTTGC-TAAATCCATCACTTGATGGATC
1 AAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTTGAATTCATCA-TTGATGGATC
* * *
13562 AGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT---GAA-G
65 AGCATTACCAGATAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGG
* ** * **
13606 AAGAAGAAGTTCACAATGAGAAGAGCTTGTTCAACCTTTTGCAT-AATTCTATCACAGAAAGAGA
1 AAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTTGAATTC-AT--C----ATTGA
* * * * *
13670 TAGATTAACATCAACCTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGA
59 TGGA-T--CAGC-A--TTACCAGATAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGG
** *
13730 AAGAAGAAGTTCATAATGAGAAGAGCTTATTCAACCTTTT
1 AAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTT
13770 AAAGGACTCT
Statistics
Matches: 995, Mismatches: 142, Indels: 72
0.82 0.12 0.06
Matches are distributed among these distances:
108 79 0.08
109 59 0.06
111 1 0.00
112 106 0.11
113 364 0.37
114 11 0.01
115 145 0.15
116 150 0.15
117 3 0.00
120 36 0.04
123 3 0.00
124 38 0.04
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (112 bp):
AAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTTGAATTCATCATTGATGGATCA
GCATTACCAGATAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGG
Found at i:12713 original size:271 final size:277
Alignment explanation
Indices: 12215--12750 Score: 768
Period size: 271 Copynumber: 1.9 Consensus size: 277
12205 ATCCGAAGAA
* * *
12215 AGAAGAATTTGTTCAACCTTTTTCTTAAATTCATCATTCAATGGATCAGCGTTGCCAGAAGGTTC
1 AGAAGAATTTGTTCAACCTTTTGCTTAAATCCATCATTCAATGGATCAGCGTTGCCAGAAAGTTC
* *
12280 ATAATGAGAAGAACTTATCTGAAGAGAAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAATCTT
66 ATAATGAGAAGAACTCATCTGAAGAGAAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAATCTT
12345 TTTTGCTTGACTCTATCATAGAAGAAGATAGATCAGCATTAACATTTCCAGTTCGAGTTCATAAT
131 TTTTGCTTGAC-CTATCATAGAAGAAGATAGATCAGCATT-A-A--TCCAGTTCGAGTTCATAAT
* * *
12410 GAGAAGAACTCATCTGAATAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGT
191 GAGAAGAACTCATCTGAAGAAAGAAAAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGT
12475 TTGAAAGAAGAAATTCAGAATG
256 TTGAAAGAAGAAATTCAGAATG
* * *
12497 AGAAGAATTTGTTCAACCTTTTGC-TAAATCCATCACTT-GATGGATCAGCTTTTCCAGAGAAAG
1 AGAAGAATTTGTTCAACCTTTTGCTTAAATCCATCA-TTCAATGGATCAGCGTTGCC--AGAAAG
*
12560 TTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAA
63 TTCATAATGAGAAGAACTCATCTGAAG-AGAAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAA
* *** *
12625 -C-TTTTTGCTTGA-GT-TCAT-GATTCA-ATGGATCAGCATT-A-CCAGTTCGAGTTCATAATG
127 TCTTTTTTGCTTGACCTATCATAGAAGAAGATAGATCAGCATTAATCCAGTTCGAGTTCATAATG
12682 AGAAGAACTCATCTGAAGAAAGAAAAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTT
192 AGAAGAACTCATCTGAAGAAAGAAAAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTT
12747 TGAA
257 TGAA
12751 TTCATCATTT
Statistics
Matches: 233, Mismatches: 17, Indels: 19
0.87 0.06 0.07
Matches are distributed among these distances:
271 85 0.36
274 1 0.00
277 12 0.05
278 3 0.01
279 4 0.02
280 1 0.00
281 24 0.10
282 36 0.15
283 32 0.14
284 35 0.15
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (277 bp):
AGAAGAATTTGTTCAACCTTTTGCTTAAATCCATCATTCAATGGATCAGCGTTGCCAGAAAGTTC
ATAATGAGAAGAACTCATCTGAAGAGAAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAATCTT
TTTTGCTTGACCTATCATAGAAGAAGATAGATCAGCATTAATCCAGTTCGAGTTCATAATGAGAA
GAACTCATCTGAAGAAAGAAAAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAA
AGAAGAAATTCAGAATG
Found at i:13497 original size:337 final size:339
Alignment explanation
Indices: 12477--13647 Score: 2102
Period size: 341 Copynumber: 3.5 Consensus size: 339
12467 CCTTTTGTTT
*
12477 GAAAGAAGAAATTCAGAATGAGAAGAATTTGTTCAACCTTTTGCTAAATCCATCACTTGATGGAT
1 GAAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGCTAAATCCATCACTTGATGGAT
12542 CAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAA
66 CAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT--AGAAGGAAGAAGAAGTTCATAA
*
12607 TGAGAAGAACTTGTTCAACTTTTTGCTTGAGTTCATGATTCAATGGATCAGCATTACCAGTTCGA
129 TGAGAAGAACTTGTTCAACTTTTTGCTTGAATTCATGATTCAATGGATCAGCATTACCAGTTCGA
12672 GTTCATAATGAGAAGAACTCATCTGAAGAAAGAAAAAGAAGTTCATAATGAGAAGAATTTGTTCA
194 GTTCATAATGAGAAGAACTCATCTGAAGAAAGAAAAAGAAGTTCATAATGAGAAGAATTTGTTCA
12737 ACCTTTTGTTTGAATTCATCATTTGATGGATCAACATTACCAGATATAGTTCATAATAAGAAGAA
259 ACCTTTTGTTTGAATTCATCATTTGATGGATCAACATTACCAGATATAGTTCATAATAAGAAGAA
12802 CTCGTCATCTGAAGAA
324 CTCGTCATCTGAAGAA
12818 GAAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGCTAAATCCATCACTTGATGGAT
1 GAAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGCTAAATCCATCACTTGATGGAT
*
12883 CAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTAAAGAAGGAAGAATAAGTTCATAA
66 CAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT--AGAAGGAAGAAGAAGTTCATAA
12948 TGAGAAGAACTTGTTCAACTTTTTGCTTGAATTCATGATTCAATGGATCAGCATTACCAGTTCGA
129 TGAGAAGAACTTGTTCAACTTTTTGCTTGAATTCATGATTCAATGGATCAGCATTACCAGTTCGA
*
13013 GTTCATAATGAGAAGAACTCATCTGAAGAAAGAAAAAGAAATTCATAATGAGAAGAATTTGTTCA
194 GTTCATAATGAGAAGAACTCATCTGAAGAAAGAAAAAGAAGTTCATAATGAGAAGAATTTGTTCA
13078 ACCTTTTGTTTGAATTCATCATTTGATGGATCAACATTACCAGATATAGTTCATAATAAGAAGAA
259 ACCTTTTGTTTGAATTCATCATTTGATGGATCAACATTACCAGATATAGTTCATAATAAGAAGAA
*
13143 CTCGTCATCTAAAGAA
324 CTCGTCATCTGAAGAA
*
13159 GAAAGAAGAAATTCATAATGAGAATAATTTGTTCAA-CTATTTGCTAAATCCATCACTTGATGGA
1 GAAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCT-TTTGCTAAATCCATCACTTGATGGA
13223 TCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT-GAA-GAAGAAGAAGTTCATAAT
65 TCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTAGAAGGAAGAAGAAGTTCATAAT
13286 GAGAAGAACTTGTTCAACTTTTTGCTTGAATTCATGATTCAATGGATCAGCATTACCAGTTCGAG
130 GAGAAGAACTTGTTCAACTTTTTGCTTGAATTCATGATTCAATGGATCAGCATTACCAGTTCGAG
* *
13351 TTCATAATGAGAAGAACTCATCTGAA-AAAGGAAGAAGAAGTTCATAATAAGAAGAATTTGTTCA
195 TTCATAATGAGAAGAACTCATCTGAAGAAA-GAAAAAGAAGTTCATAATGAGAAGAATTTGTTCA
* * * *
13415 ACCTTTTGTTTGAATTCATCATTTGATGGATCAACATTGCCAGGTAGAGTTCATAATGAGAAGAA
259 ACCTTTTGTTTGAATTCATCATTTGATGGATCAACATTACCAGATATAGTTCATAATAAGAAGAA
13480 CTCGTCATCTGAAGAA
324 CTCGTCATCTGAAGAA
*
13496 GAAAGAAGAAATTCATAATAAGAAGAATTTGTTCAACCTTTTGCTAAATCCATCACTTGATGGAT
1 GAAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGCTAAATCCATCACTTGATGGAT
*
13561 CAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT-GAA-GAAGAAGAAGTTCACAATG
66 CAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTAGAAGGAAGAAGAAGTTCATAATG
* *
13624 AGAAGAGCTTGTTCAACCTTTTGC
131 AGAAGAACTTGTTCAACTTTTTGC
13648 ATAATTCTAT
Statistics
Matches: 806, Mismatches: 21, Indels: 10
0.96 0.03 0.01
Matches are distributed among these distances:
336 3 0.00
337 359 0.45
338 5 0.01
340 2 0.00
341 437 0.54
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.29
Consensus pattern (339 bp):
GAAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGCTAAATCCATCACTTGATGGAT
CAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTAGAAGGAAGAAGAAGTTCATAATG
AGAAGAACTTGTTCAACTTTTTGCTTGAATTCATGATTCAATGGATCAGCATTACCAGTTCGAGT
TCATAATGAGAAGAACTCATCTGAAGAAAGAAAAAGAAGTTCATAATGAGAAGAATTTGTTCAAC
CTTTTGTTTGAATTCATCATTTGATGGATCAACATTACCAGATATAGTTCATAATAAGAAGAACT
CGTCATCTGAAGAA
Found at i:13783 original size:124 final size:124
Alignment explanation
Indices: 13566--13858 Score: 404
Period size: 124 Copynumber: 2.4 Consensus size: 124
13556 TGGATCAGCT
13566 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT---GAAG-AAGAAGAAGTTCACAATGAGA
1 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAAGAAGAAGTTCACAATGAGA
* ** * * * *
13627 AGAGCTTGTTCAACCTTTTGCATAATTCTATCACAGAAAGAGATAGATTAACATCAACC
66 AGAGCTTATTCAACCTTTTAAAGAACTCTATCACAGAAAGAAATAGATCAACATCAACC
*
13686 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAAGAAGAAGTTCATAATGAGA
1 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAAGAAGAAGTTCACAATGAGA
* * *
13751 AGAGCTTATTCAACCTTTTAAAGGACTCTATCACAGAAAGAAATAGGTCAACATCATCC
66 AGAGCTTATTCAACCTTTTAAAGAACTCTATCACAGAAAGAAATAGATCAACATCAACC
* *
13810 ---CCAGCGGAAAGTTCATAATGAGAAGAACTCATCTGAAGAA-AGAGAAGAA
1 TTTCCAG-AGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAAGAAGAA
13859 TTTATTCAAC
Statistics
Matches: 155, Mismatches: 13, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
120 36 0.23
121 12 0.08
122 34 0.22
123 4 0.03
124 69 0.45
ACGTcount: A:0.43, C:0.16, G:0.19, T:0.23
Consensus pattern (124 bp):
TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAAGAAGAAGTTCACAATGAGA
AGAGCTTATTCAACCTTTTAAAGAACTCTATCACAGAAAGAAATAGATCAACATCAACC
Found at i:14065 original size:3 final size:3
Alignment explanation
Indices: 14002--14052 Score: 79
Period size: 3 Copynumber: 17.3 Consensus size: 3
13992 CTCTATTTTC
14002 TAT TAT TAT T-T ATAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
14047 T-T TAT T
1 TAT TAT T
14053 TTTAAAATTA
Statistics
Matches: 45, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
2 3 0.07
3 41 0.91
4 1 0.02
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:15751 original size:23 final size:23
Alignment explanation
Indices: 15725--15769 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
15715 CACCACAGCT
* *
15725 CGTATAAATGCACCGAAGTGCCG
1 CGTAGAAATACACCGAAGTGCCG
* *
15748 CGTAGAATTACACCGTAGTGCC
1 CGTAGAAATACACCGAAGTGCC
15770 ATATAATGAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.29, C:0.27, G:0.24, T:0.20
Consensus pattern (23 bp):
CGTAGAAATACACCGAAGTGCCG
Found at i:15920 original size:25 final size:25
Alignment explanation
Indices: 15888--15956 Score: 129
Period size: 25 Copynumber: 2.8 Consensus size: 25
15878 TATATATATA
15888 TCCCGAAGGACCGCGTAGAATATTG
1 TCCCGAAGGACCGCGTAGAATATTG
*
15913 TCCTGAAGGACCGCGTAGAATATTG
1 TCCCGAAGGACCGCGTAGAATATTG
15938 TCCCGAAGGACCGCGTAGA
1 TCCCGAAGGACCGCGTAGA
15957 CCCTCTACTC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.28, C:0.25, G:0.29, T:0.19
Consensus pattern (25 bp):
TCCCGAAGGACCGCGTAGAATATTG
Found at i:20967 original size:25 final size:25
Alignment explanation
Indices: 20939--21007 Score: 129
Period size: 25 Copynumber: 2.8 Consensus size: 25
20929 TATATATATA
20939 TCCCGAAGGACCGCGTAGAATATTG
1 TCCCGAAGGACCGCGTAGAATATTG
20964 TCCCGAAGGACCGCGTAGAATATTG
1 TCCCGAAGGACCGCGTAGAATATTG
*
20989 TCCCGAAGGACCGCATAGA
1 TCCCGAAGGACCGCGTAGA
21008 CCCTCTACTC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.29, C:0.26, G:0.28, T:0.17
Consensus pattern (25 bp):
TCCCGAAGGACCGCGTAGAATATTG
Found at i:23814 original size:25 final size:25
Alignment explanation
Indices: 23786--23834 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
23776 TATATATATA
*
23786 ATAAATAATAATTTAT-ATTTTTTAC
1 ATAAATAAT-ATTTATCATATTTTAC
*
23811 ATAAATTATATTTATCATATTTTA
1 ATAAATAATATTTATCATATTTTA
23835 ATATTTATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (25 bp):
ATAAATAATATTTATCATATTTTAC
Found at i:23954 original size:120 final size:120
Alignment explanation
Indices: 23830--24063 Score: 303
Period size: 120 Copynumber: 1.9 Consensus size: 120
23820 ATTTATCATA
* * *
23830 TTTTAA-TATTTATTTATTTTTCAATATCGAACG-AAAGGGCAGTCTTAAAACAACTGGATGTTC
1 TTTTAATTATTTATTTATTTTTCAATATCGAA-GAAAAGAGCAGTCTTAAAACAACTAGAAG-TC
*
23893 ATTTTCTGATATTTTTAAATAAATAAATATCTTATTTTATAAAT-TATATATTAATTG
64 ATTTTCTGATATTTCTAAATAAATAAATATCTTA-TTTATAAATATATATATTAATTG
* * * *** * *
23950 TTTTAATTATTTATTTATTTTTTAATATCGAAGAAAATAGCTGTCTTAAGGTACCTAGAAGTCCT
1 TTTTAATTATTTATTTATTTTTCAATATCGAAGAAAAGAGCAGTCTTAAAACAACTAGAAGTCAT
*
24015 TTTCTGATATTTCTAAATAAATAAATATTTTATTTATAAATATATATAT
66 TTTCTGATATTTCTAAATAAATAAATATCTTATTTATAAATATATATAT
24064 ATATAAATTA
Statistics
Matches: 98, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
119 9 0.09
120 47 0.48
121 42 0.43
ACGTcount: A:0.37, C:0.08, G:0.09, T:0.47
Consensus pattern (120 bp):
TTTTAATTATTTATTTATTTTTCAATATCGAAGAAAAGAGCAGTCTTAAAACAACTAGAAGTCAT
TTTCTGATATTTCTAAATAAATAAATATCTTATTTATAAATATATATATTAATTG
Found at i:23959 original size:20 final size:19
Alignment explanation
Indices: 23934--23975 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
23924 TTATTTTATA
23934 AATTATATATTAATTGTTTT
1 AATTATATATTAATT-TTTT
* *
23954 AATTATTTATTTATTTTTT
1 AATTATATATTAATTTTTT
23973 AAT
1 AAT
23976 ATCGAAGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (19 bp):
AATTATATATTAATTTTTT
Found at i:24054 original size:23 final size:23
Alignment explanation
Indices: 24022--24065 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
24012 CCTTTTCTGA
*
24022 TATTTCTAAATAAATAAATATTT
1 TATTTATAAATAAATAAATATTT
* *
24045 TATTTATAAATATATATATAT
1 TATTTATAAATAAATAAATAT
24066 ATAAATTAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (23 bp):
TATTTATAAATAAATAAATATTT
Found at i:24070 original size:16 final size:16
Alignment explanation
Indices: 24035--24079 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 16
24025 TTCTAAATAA
* *
24035 ATAAATAT-TTTATTT
1 ATAAATATATATATAT
24050 ATAAATATATATATAT
1 ATAAATATATATATAT
24066 ATAAAT-TA-ATATAT
1 ATAAATATATATATAT
24080 TTTTTCATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
14 6 0.22
15 10 0.37
16 11 0.41
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
ATAAATATATATATAT
Found at i:27690 original size:17 final size:18
Alignment explanation
Indices: 27662--27695 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
27652 CATAATAATC
27662 ATTAACATTAATTAAAGA
1 ATTAACATTAATTAAAGA
27680 ATTAA-ATTAATTAAAG
1 ATTAACATTAATTAAAG
27696 TTAGTGAATC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.56, C:0.03, G:0.06, T:0.35
Consensus pattern (18 bp):
ATTAACATTAATTAAAGA
Found at i:27907 original size:2 final size:2
Alignment explanation
Indices: 27902--27961 Score: 120
Period size: 2 Copynumber: 30.0 Consensus size: 2
27892 AAATAAATTG
27902 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
27944 AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT
27962 GAATAAGGTA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 58 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:30516 original size:40 final size:40
Alignment explanation
Indices: 30452--30527 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
30442 AAAAGTAGTT
*
30452 TTTGCTTTGAGTATGATATACTGGATCTATATTTTTCTAC
1 TTTGCTTTGAGTAGGATATACTGGATCTATATTTTTCTAC
* * *
30492 TTTGCTTTGAGTAGGATCTTCTGGATCTGTATTTTT
1 TTTGCTTTGAGTAGGATATACTGGATCTATATTTTT
30528 TCATTGTCCT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.18, C:0.12, G:0.18, T:0.51
Consensus pattern (40 bp):
TTTGCTTTGAGTAGGATATACTGGATCTATATTTTTCTAC
Found at i:38008 original size:31 final size:33
Alignment explanation
Indices: 37941--38030 Score: 89
Period size: 31 Copynumber: 2.8 Consensus size: 33
37931 GAGCAATAAA
* * *
37941 TTTTGA-TAAGTTTAAGGACTATTTCAAAATAG
1 TTTTGATTAAGTTTAAAGACTATTTTATAATAG
37973 -TTTGATTAA-TTTAAAGACTATTTTATAAT-G
1 TTTTGATTAAGTTTAAAGACTATTTTATAATAG
* * * *
38003 TTTTGATAAATTTTAATGATTATTTTAT
1 TTTTGATTAAGTTTAAAGACTATTTTAT
38031 TTTTTTTATA
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
30 1 0.02
31 30 0.61
32 18 0.37
ACGTcount: A:0.36, C:0.03, G:0.11, T:0.50
Consensus pattern (33 bp):
TTTTGATTAAGTTTAAAGACTATTTTATAATAG
Found at i:38889 original size:125 final size:125
Alignment explanation
Indices: 38665--38917 Score: 497
Period size: 125 Copynumber: 2.0 Consensus size: 125
38655 AAAAACCAGC
38665 ACAAAAGTTGATATCACCTCCTATCAACCAAGAATAAAGAAGAGGTAAAGAGCTTTAAAATTTTT
1 ACAAAAGTTGATATCACCTCCTATCAACCAAGAATAAAGAAGAGGTAAAGAGCTTTAAAATTTTT
38730 GAGAGATAATGCATCATGAGTGATTGAGTATTCATTGTCAAATGGTTGAGAGTGTTTAGA
66 GAGAGATAATGCATCATGAGTGATTGAGTATTCATTGTCAAATGGTTGAGAGTGTTTAGA
38790 ACAAAAGTTGATATCACCTCCTATCAACCAAGAATAAAGAAGAGGTAAAGAGCTTTAAAATTTTT
1 ACAAAAGTTGATATCACCTCCTATCAACCAAGAATAAAGAAGAGGTAAAGAGCTTTAAAATTTTT
*
38855 GAGAGATAATGCATCATGAGTGATTGAGTGTTCATTGTCAAATGGTTGAGAGTGTTTAGA
66 GAGAGATAATGCATCATGAGTGATTGAGTATTCATTGTCAAATGGTTGAGAGTGTTTAGA
38915 ACA
1 ACA
38918 GATGCTACCT
Statistics
Matches: 127, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
125 127 1.00
ACGTcount: A:0.38, C:0.11, G:0.21, T:0.29
Consensus pattern (125 bp):
ACAAAAGTTGATATCACCTCCTATCAACCAAGAATAAAGAAGAGGTAAAGAGCTTTAAAATTTTT
GAGAGATAATGCATCATGAGTGATTGAGTATTCATTGTCAAATGGTTGAGAGTGTTTAGA
Found at i:40664 original size:3 final size:3
Alignment explanation
Indices: 40648--40695 Score: 55
Period size: 3 Copynumber: 16.3 Consensus size: 3
40638 TCTACAAAAA
* *
40648 TAT T-T TAT TA- TAT TATT TAT TAT TTT TAT TGT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT
40692 TAT T
1 TAT T
40696 TTTTTAGACC
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
2 4 0.11
3 31 0.82
4 3 0.08
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (3 bp):
TAT
Found at i:41349 original size:14 final size:15
Alignment explanation
Indices: 41332--41361 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
41322 TTTTTTAACA
41332 TTTTTCTC-TTAATT
1 TTTTTCTCTTTAATT
41346 TTTTTCTCTTTAATT
1 TTTTTCTCTTTAATT
41361 T
1 T
41362 ATTTAGTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.73
Consensus pattern (15 bp):
TTTTTCTCTTTAATT
Found at i:44054 original size:94 final size:94
Alignment explanation
Indices: 43865--44122 Score: 322
Period size: 94 Copynumber: 2.7 Consensus size: 94
43855 AAATTATAAT
* * * * * *
43865 ATTATATATATACAATAAAGCTTGAGTTGTCCCTCTAAAGAAATTGGTTAAAAGCCCCGACTTTA
1 ATTATA-ATATAAAATAATGCTTGAGTTGTCCCTCTAGAGCAATTGGTT-AAACCCCCGGCTTTA
*
43930 TGGATAAGATTCAGCTAGCTTGATAAAGGTG
64 TGGATAAGATTCAGCTAGCCTGATAAAGGTG
43961 ATTATAATATAAAATAATGCTTGAGTTGTCCCTCTAGAGCAATTGGTTAAACCCCCGGCTTTATG
1 ATTATAATATAAAATAATGCTTGAGTTGTCCCTCTAGAGCAATTGGTTAAACCCCCGGCTTTATG
*
44026 GATAATATTCAGCTAGCCTGATAAAGGTG
66 GATAAGATTCAGCTAGCCTGATAAAGGTG
* ** *
44055 ATTATAATATCTATACAA-AGAT-ATTGAGCGGTCCCTTTAGAGCAATTGGTTAAACGCCCCGGC
1 ATTATAATA--TA-A-AATA-ATGCTTGAGTTGTCCCTCTAGAGCAATTGGTTAAAC-CCCCGGC
44118 TTTAT
60 TTTAT
44123 AGATTCAACT
Statistics
Matches: 144, Mismatches: 12, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
94 51 0.35
95 38 0.26
96 8 0.06
97 31 0.22
98 16 0.11
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.32
Consensus pattern (94 bp):
ATTATAATATAAAATAATGCTTGAGTTGTCCCTCTAGAGCAATTGGTTAAACCCCCGGCTTTATG
GATAAGATTCAGCTAGCCTGATAAAGGTG
Found at i:45315 original size:160 final size:160
Alignment explanation
Indices: 45119--45460 Score: 585
Period size: 160 Copynumber: 2.1 Consensus size: 160
45109 AGAGCCAATT
*
45119 TCAACTTCACGGCGAAGGATATTGGACTCGAAACAATACAAGCTTGGATTTCAACTTCACGACGA
1 TCAACTTCACGGCGAAGGATATTGGACTCAAAACAATACAAGCTTGGATTTCAACTTCACGACGA
45184 AGGATATTCAAGTCAAGGCTCAACTTCACAACGAAGGGGTCATCCACGATTTCAACTTCACGACG
66 AGGATATTCAAGTCAAGGCTCAACTTCACAACGAAGGGGTCATCCACGATTTCAACTTCACGACG
45249 AAGGATATCGTGCCAACTCTAGATTAGATA
131 AAGGATATCGTGCCAACTCTAGATTAGATA
*
45279 TCAACTTCACGGCGAAGGATATTGGACTCAAAACAATACAAGCTTGGATTTTAACTTCACGACGA
1 TCAACTTCACGGCGAAGGATATTGGACTCAAAACAATACAAGCTTGGATTTCAACTTCACGACGA
* * * *
45344 AGGATATTTAAGTCAATGCTCAACTTCACAATGAAGGGGTCATCCATGATTTCAACTTCACGACG
66 AGGATATTCAAGTCAAGGCTCAACTTCACAACGAAGGGGTCATCCACGATTTCAACTTCACGACG
* * *
45409 AAGGATATCGTGTCAACTCTAGATTGGATT
131 AAGGATATCGTGCCAACTCTAGATTAGATA
**
45439 TCAACTTCACGATGAAGGATAT
1 TCAACTTCACGGCGAAGGATAT
45461 CCATTTCAAA
Statistics
Matches: 171, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
160 171 1.00
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (160 bp):
TCAACTTCACGGCGAAGGATATTGGACTCAAAACAATACAAGCTTGGATTTCAACTTCACGACGA
AGGATATTCAAGTCAAGGCTCAACTTCACAACGAAGGGGTCATCCACGATTTCAACTTCACGACG
AAGGATATCGTGCCAACTCTAGATTAGATA
Found at i:45728 original size:116 final size:117
Alignment explanation
Indices: 45569--46148 Score: 447
Period size: 124 Copynumber: 4.9 Consensus size: 117
45559 CATCTTTAGA
*
45569 TTGGATTTCAATTTCACGACGAAGGATATCCAATTCAAGGCTCAACTTCACAACGAATGGGTCAT
1 TTGGATTTCAACTTCACGACGAAGGATATCCAATTCAAGGCTCAACTTCACAACGAATGGGTCAT
*
45634 CCACGGTTTCAACTTCACGACGAAGGGAATCGTGCTCATCTGCCACATTC-A-
66 CCACGGTTTCAACTTCACGACGAAGGGAATCGTGCTCATCT-CCACATACAAC
* * * *
45685 TTTGATTTCAACTTCACGACGAAGGATATCCAATTCAAGGCTCAACTTCGCAACGAAGGGGCCAT
1 TTGGATTTCAACTTCACGACGAAGGATATCCAATTCAAGGCTCAACTTCACAACGAATGGGTCAT
* * * * * *
45750 CCATGATTTCAACTTCATGACGAA-GGATATTGTGC-CAACT---C-TA-GA-
66 CCACGGTTTCAACTTCACGACGAAGGGA-ATCGTGCTCATCTCCACATACAAC
* *** *
45795 TTGGATTTCAACTTCACGACGAAGGATATCCAATTCAAAGCTCAACTTCATGGCGAAAGGGTTTC
1 TTGGATTTCAACTTCACGACGAAGGATATCCAATTCAAGGCTCAACTTCACAACGAATGGG--T-
* * * * **
45860 CCAGATTCATTCAGAGCCAATTCTAACTTCACGGCGAA-GGATATTG-GACTCGA--AACA-ATA
63 -C--ATCCA--C-G-G---TTTC-AACTTCACGACGAAGGGA-ATCGTG-CTC-ATCTCCACATA
45920 CAAAC
114 C-AAC
* ** *
45925 TTGGATTTCAACTTCACGACGAATGATATTTAAGTT-AAGGCTCAACTTCACAACGAATGGGCCA
1 TTGGATTTCAACTTCACGACGAAGGATATCCAA-TTCAAGGCTCAACTTCACAACGAATGGGTCA
* * * * * *
45989 TCCACAGTTTCAACTTCACGATGAAGGGAATCGTGTTCACCATCAACACTCATCTCTAGC
65 TCCACGGTTTCAACTTCACGACGAAGGGAATCGTGCTCATC-TC--CA--CAT-AC-AAC
* * * *
46049 TTGGATTTCAACTTCACGACTAAGGATATTCAAGTT-AAGGCTCAACTTCACAAAGAATGAGTCA
1 TTGGATTTCAACTTCACGACGAAGGATATCCAA-TTCAAGGCTCAACTTCACAACGAATGGGTCA
46113 TCCACGGTTTCAACTTCACGACGAAGGGAATCGTGC
65 TCCACGGTTTCAACTTCACGACGAAGGGAATCGTGC
46149 CCACAAGCAG
Statistics
Matches: 369, Mismatches: 57, Indels: 68
0.75 0.12 0.14
Matches are distributed among these distances:
110 56 0.15
111 1 0.00
114 1 0.00
115 8 0.02
116 108 0.29
117 7 0.02
119 1 0.00
120 3 0.01
122 1 0.00
123 6 0.02
124 119 0.32
125 1 0.00
126 2 0.01
127 2 0.01
129 1 0.00
130 50 0.14
131 2 0.01
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (117 bp):
TTGGATTTCAACTTCACGACGAAGGATATCCAATTCAAGGCTCAACTTCACAACGAATGGGTCAT
CCACGGTTTCAACTTCACGACGAAGGGAATCGTGCTCATCTCCACATACAAC
Found at i:46432 original size:84 final size:84
Alignment explanation
Indices: 46203--46502 Score: 280
Period size: 84 Copynumber: 3.6 Consensus size: 84
46193 GATATCGTGT
* * ** * * * * *
46203 TCATTTACAACATAACTCAAGGAAAGAATGG-CATTTGCCAACAAAAGACCTTCGAGTTTGACTA
1 TCATTTGCAACATAACTTAAGGCGAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGATTA
* *
46267 CGCTCAGCTCAAAGGCATA
66 CACTCAGCTCAAAGGCACA
* *
46286 TCATTTGCAACATAACTTAAGGCTAGAAGGGTTATCTGCCAACAAAAAACCTTCGAGTTCGATTA
1 TCATTTGCAACATAACTTAAGGCGAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGATTA
*
46351 CACT-AGGCTCAAATGCACA
66 CACTCA-GCTCAAAGGCACA
* * * * *
46370 TCATTTGCATCATAACTTAAGTCGAGAAGGGTTATCTTCTAACCAAAGACCTTCGAGTTCGATTA
1 TCATTTGCAACATAACTTAAGGCGAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGATTA
* * * * *
46435 TATTCAACTCAGAGGCAAA
66 CACTCAGCTCAAAGGCACA
* * * ** * *
46454 TCGAATTTACAGCTTTGCTCAAGGCGAGAAGGGTTATCTGTCAACAAAA
1 TC--ATTTGCAACATAACTTAAGGCGAGAAGGGTTATCTGCCAACAAAA
46503 ACTGACGAGT
Statistics
Matches: 175, Mismatches: 37, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
83 27 0.15
84 113 0.65
85 1 0.01
86 34 0.19
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (84 bp):
TCATTTGCAACATAACTTAAGGCGAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGATTA
CACTCAGCTCAAAGGCACA
Found at i:46760 original size:3 final size:3
Alignment explanation
Indices: 46744--46795 Score: 54
Period size: 3 Copynumber: 17.7 Consensus size: 3
46734 TCTAGAAAAA
* * *
46744 TAT T-T TAT TA- TAT TATT TAC TAT TTT TAT TGT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT
46788 TAT TAT TA
1 TAT TAT TA
46796 ATTTTATTTT
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
2 4 0.10
3 33 0.82
4 3 0.08
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:48490 original size:10 final size:11
Alignment explanation
Indices: 48466--48502 Score: 65
Period size: 11 Copynumber: 3.3 Consensus size: 11
48456 GTGTACCATG
48466 TTTACACATTTT
1 TTTA-ACATTTT
48478 TTTAACATTTT
1 TTTAACATTTT
48489 TTTAACATTTT
1 TTTAACATTTT
48500 TTT
1 TTT
48503 CTCTTTAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 21 0.84
12 4 0.16
ACGTcount: A:0.24, C:0.11, G:0.00, T:0.65
Consensus pattern (11 bp):
TTTAACATTTT
Found at i:53371 original size:21 final size:21
Alignment explanation
Indices: 53342--53394 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
53332 ATTCTGACTA
53342 TCGCATTGCGATTTCCCAAAT
1 TCGCATTGCGATTTCCCAAAT
* * *
53363 TCGCGTTGCGATTTTCCTAAT
1 TCGCATTGCGATTTCCCAAAT
* *
53384 TCACAATGCGA
1 TCGCATTGCGA
53395 ATACGTAAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTCCCAAAT
Found at i:53456 original size:20 final size:20
Alignment explanation
Indices: 53387--53457 Score: 88
Period size: 20 Copynumber: 3.5 Consensus size: 20
53377 TCCTAATTCA
*
53387 CAATGCGAATACGTAAATCG
1 CAATGCGATTACGTAAATCG
* ** *
53407 CAACGCGAATTTGGAAAATCG
1 CAATGCG-ATTACGTAAATCG
53428 CAATGCGATTACGTAAATCG
1 CAATGCGATTACGTAAATCG
53448 CAATGCGATT
1 CAATGCGATT
53458 TACATAGCGC
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
20 26 0.63
21 15 0.37
ACGTcount: A:0.37, C:0.20, G:0.21, T:0.23
Consensus pattern (20 bp):
CAATGCGATTACGTAAATCG
Found at i:53657 original size:22 final size:22
Alignment explanation
Indices: 53632--53693 Score: 69
Period size: 18 Copynumber: 3.0 Consensus size: 22
53622 GGCGACATCC
53632 GTCCCCATCTCCGACGAAATCA
1 GTCCCCATCTCCGACGAAATCA
*
53654 GTCCCCA----CGACGATATCA
1 GTCCCCATCTCCGACGAAATCA
* *
53672 GTCTCCATCTCCGGCGAAATCA
1 GTCCCCATCTCCGACGAAATCA
53694 TTCACGGTCA
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
18 16 0.50
22 16 0.50
ACGTcount: A:0.26, C:0.39, G:0.16, T:0.19
Consensus pattern (22 bp):
GTCCCCATCTCCGACGAAATCA
Found at i:54069 original size:33 final size:34
Alignment explanation
Indices: 54018--54091 Score: 89
Period size: 33 Copynumber: 2.2 Consensus size: 34
54008 ACTATCGCAA
**
54018 TGCGATTCTGTCGATGCGATTTTCA-TTTCGCGT
1 TGCGATTCTGTCGATGCGATAGTCATTTTCGCGT
* *
54051 TGCGATTCT-TGCGTTGCGATAGTCATTTTCGTGT
1 TGCGATTCTGT-CGATGCGATAGTCATTTTCGCGT
54085 TGCGATT
1 TGCGATT
54092 TAAAGTTTTG
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
32 1 0.03
33 20 0.57
34 14 0.40
ACGTcount: A:0.12, C:0.19, G:0.26, T:0.43
Consensus pattern (34 bp):
TGCGATTCTGTCGATGCGATAGTCATTTTCGCGT
Found at i:56006 original size:20 final size:20
Alignment explanation
Indices: 55981--56104 Score: 134
Period size: 20 Copynumber: 6.5 Consensus size: 20
55971 AGAATAGTTT
*
55981 ACTATCGCAACGCGAAAATG
1 ACTATCGCAATGCGAAAATG
*
56001 ACTATCGCAA--CG-AGA-G
1 ACTATCGCAATGCGAAAATG
*
56017 A--ATCGCAATGTGAAAATG
1 ACTATCGCAATGCGAAAATG
*
56035 GCTATCGCAATGCGAAAATG
1 ACTATCGCAATGCGAAAATG
* *
56055 ACTATCACAATGTGAAAATG
1 ACTATCGCAATGCGAAAATG
**
56075 ACTATCGCAATGCGAATTTG
1 ACTATCGCAATGCGAAAATG
56095 ACTATCGCAA
1 ACTATCGCAA
56105 CGAAAGAATC
Statistics
Matches: 86, Mismatches: 12, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
14 7 0.08
16 3 0.03
17 4 0.05
18 3 0.03
20 69 0.80
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.21
Consensus pattern (20 bp):
ACTATCGCAATGCGAAAATG
Found at i:56176 original size:20 final size:20
Alignment explanation
Indices: 56151--56217 Score: 91
Period size: 20 Copynumber: 3.4 Consensus size: 20
56141 GATTCTTTCG
56151 TTGCGATAGTCGA-ATTCGCA
1 TTGCGATAGTC-ATATTCGCA
*
56171 TTGCGATAGTCATTTTCGCA
1 TTGCGATAGTCATATTCGCA
* *
56191 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGTCATATTCGCA
56211 TTGCGAT
1 TTGCGAT
56218 TTTGTTGTTG
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
19 1 0.02
20 43 0.98
ACGTcount: A:0.19, C:0.19, G:0.24, T:0.37
Consensus pattern (20 bp):
TTGCGATAGTCATATTCGCA
Found at i:56248 original size:33 final size:34
Alignment explanation
Indices: 56182--56287 Score: 133
Period size: 34 Copynumber: 3.1 Consensus size: 34
56172 TGCGATAGTC
* * *
56182 ATTTTCGCATTGCGATAGTCATTTTCGCGTTGCG
1 ATTTTCTCGTTGCGATATTCATTTTCGCGTTGCG
* * * *
56216 ATTTTGTTGTTGCGATTTTCA-TTTCGCATTGCG
1 ATTTTCTCGTTGCGATATTCATTTTCGCGTTGCG
*
56249 ATTCTCTCGTTGCGATATTCATTTTCGCGTTGCG
1 ATTTTCTCGTTGCGATATTCATTTTCGCGTTGCG
56283 ATTTT
1 ATTTT
56288 AAGTTTCATA
Statistics
Matches: 58, Mismatches: 13, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
33 28 0.48
34 30 0.52
ACGTcount: A:0.13, C:0.19, G:0.21, T:0.47
Consensus pattern (34 bp):
ATTTTCTCGTTGCGATATTCATTTTCGCGTTGCG
Found at i:56281 original size:20 final size:20
Alignment explanation
Indices: 56165--56284 Score: 77
Period size: 20 Copynumber: 6.7 Consensus size: 20
56155 GATAGTCGAA
* *
56165 TTCGCATTGCGATAGTCATT
1 TTCGCGTTGCGATATTCATT
* *
56185 TTCGCATTGCGATAGTCATT
1 TTCGCGTTGCGATATTCATT
*
56205 TTCGCGTTGCGAT-TT--TG
1 TTCGCGTTGCGATATTCATT
*
56222 TT---GTTGCGATTTTCA-T
1 TTCGCGTTGCGATATTCATT
*
56238 TTCGCATTGCG--ATTC---
1 TTCGCGTTGCGATATTCATT
*
56253 -TCTCGTTGCGATATTCATT
1 TTCGCGTTGCGATATTCATT
56272 TTCGCGTTGCGAT
1 TTCGCGTTGCGAT
56285 TTTAAGTTTC
Statistics
Matches: 79, Mismatches: 9, Indels: 24
0.71 0.08 0.21
Matches are distributed among these distances:
14 16 0.20
15 2 0.03
16 6 0.08
17 6 0.08
19 6 0.08
20 43 0.54
ACGTcount: A:0.14, C:0.20, G:0.22, T:0.44
Consensus pattern (20 bp):
TTCGCGTTGCGATATTCATT
Found at i:56294 original size:20 final size:20
Alignment explanation
Indices: 56256--56294 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
56246 GCGATTCTCT
* *
56256 CGTTGCGATATTCATTTTCG
1 CGTTGCGATATTAAGTTTCG
*
56276 CGTTGCGATTTTAAGTTTC
1 CGTTGCGATATTAAGTTTC
56295 ATATTCTATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.15, C:0.18, G:0.21, T:0.46
Consensus pattern (20 bp):
CGTTGCGATATTAAGTTTCG
Found at i:58251 original size:14 final size:14
Alignment explanation
Indices: 58232--58267 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
58222 ATTGTTTAAT
58232 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
* *
58246 TGATTTGTAAATGT
1 TGATTTGTAAAAGA
58260 TGATTTGT
1 TGATTTGT
58268 TTAATTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:58443 original size:19 final size:19
Alignment explanation
Indices: 58415--58460 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
58405 GATTCACTCG
*
58415 TTGCGCTTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
58434 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
58453 TTGCGATT
1 TTGCGATT
58461 CTCTCGTTGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.13, C:0.22, G:0.17, T:0.48
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:58490 original size:20 final size:20
Alignment explanation
Indices: 58465--58553 Score: 117
Period size: 20 Copynumber: 4.5 Consensus size: 20
58455 GCGATTCTCT
58465 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATAGTCATTTCCG
*
58485 CGTTGCGATAGTCAATTCCG
1 CGTTGCGATAGTCATTTCCG
* *
58505 CGTTGCGATAATCATTTTCG
1 CGTTGCGATAGTCATTTCCG
* *
58525 TGTTACGATAGTCATATT-CG
1 CGTTGCGATAGTCAT-TTCCG
58545 CGTTGCGAT
1 CGTTGCGAT
58554 TTCCGCGTTG
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
20 57 0.97
21 2 0.03
ACGTcount: A:0.19, C:0.21, G:0.24, T:0.36
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTCCG
Found at i:61016 original size:24 final size:24
Alignment explanation
Indices: 60982--61035 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
60972 CTGAAAAATC
60982 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
61006 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
61030 ATCAAA
1 ATCAAA
61036 TTTCGAATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:61934 original size:20 final size:20
Alignment explanation
Indices: 61913--62044 Score: 165
Period size: 20 Copynumber: 6.5 Consensus size: 20
61903 ATTTATAGAT
* * *
61913 TCGCATTACGATTTATGTAT
1 TCGCATTGCGATTTACGTAA
* *
61933 TCGTATTGCAATTTACGTAA
1 TCGCATTGCGATTTACGTAA
61953 TCGCATTGCGATTTACGTAA
1 TCGCATTGCGATTTACGTAA
61973 TCGCATTGCGATTTACGTAA
1 TCGCATTGCGATTTACGTAA
* **
61993 TCGCATTGCGATTTTCCAAA
1 TCGCATTGCGATTTACGTAA
* *
62013 TTCGCGTTGCGATTTACGTAT
1 -TCGCATTGCGATTTACGTAA
62034 TCGCATTGCGA
1 TCGCATTGCGA
62045 ATTAGGAAAA
Statistics
Matches: 95, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
20 80 0.84
21 15 0.16
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.38
Consensus pattern (20 bp):
TCGCATTGCGATTTACGTAA
Found at i:62065 original size:21 final size:21
Alignment explanation
Indices: 62041--62086 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
62031 TATTCGCATT
62041 GCGAATTAGGAAAATCGCAAC
1 GCGAATTAGGAAAATCGCAAC
* * *
62062 GCGAATTTGGGAAATCGCAAT
1 GCGAATTAGGAAAATCGCAAC
62083 GCGA
1 GCGA
62087 TAGTCAGAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.37, C:0.17, G:0.28, T:0.17
Consensus pattern (21 bp):
GCGAATTAGGAAAATCGCAAC
Found at i:64927 original size:35 final size:35
Alignment explanation
Indices: 64887--64957 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
64877 CAAATCAGTC
*
64887 CATTTCTTCCATGTCTTTAAATGGAAATCAATGTG
1 CATTTCTTCCATGTCTTTAAATCGAAATCAATGTG
64922 CATTTCTTCCATGTCTTTAAATCGAAATCAATGTG
1 CATTTCTTCCATGTCTTTAAATCGAAATCAATGTG
64957 C
1 C
64958 TCTAGGGTTG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.28, C:0.20, G:0.13, T:0.39
Consensus pattern (35 bp):
CATTTCTTCCATGTCTTTAAATCGAAATCAATGTG
Found at i:77733 original size:25 final size:25
Alignment explanation
Indices: 77697--77777 Score: 76
Period size: 26 Copynumber: 3.2 Consensus size: 25
77687 CTTTTAATAA
77697 AAATTTAATTTTTTTTAAATTTTTT
1 AAATTTAATTTTTTTTAAATTTTTT
*
77722 AAATTT-ATTTTTCTTTAAAATTTTAT
1 AAATTTAATTTTT-TTT-AAATTTTTT
* * *
77748 AAGTTCACA-TATTTTTAAATTTTTAT
1 AAATTTA-ATTTTTTTTAAATTTTT-T
77774 AAAT
1 AAAT
77778 CCATCTCTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
24 6 0.13
25 16 0.36
26 19 0.42
27 3 0.07
28 1 0.02
ACGTcount: A:0.36, C:0.04, G:0.01, T:0.59
Consensus pattern (25 bp):
AAATTTAATTTTTTTTAAATTTTTT
Found at i:77745 original size:24 final size:25
Alignment explanation
Indices: 77697--77746 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
77687 CTTTTAATAA
*
77697 AAATTTAATTTTTTTTAAATTTTTT
1 AAATTTAATTTTTTTTAAATATTTT
77722 AAATTT-ATTTTTCTTTAAA-ATTTT
1 AAATTTAATTTTT-TTTAAATATTTT
77746 A
1 A
77747 TAAGTTCACA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 11 0.48
25 12 0.52
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (25 bp):
AAATTTAATTTTTTTTAAATATTTT
Found at i:79595 original size:657 final size:661
Alignment explanation
Indices: 78332--79648 Score: 2098
Period size: 657 Copynumber: 2.0 Consensus size: 661
78322 GAAAATTCAT
* * * **
78332 TAAGGGTGTGTTTGGTTGGGGGAATGTGAGATTCTTATTGGAATGGAATCAACATTCCCCCGTTT
1 TAAGGGTATGTTTGGTTGGGGGAATGTGAGATTCTCATGGGAATAAAATCAACATTCCCCCGTTT
* * * *
78397 GGTTGGTCGGGAATGTCATTTCCGGTAATCTTACATTATCAATAGTGGATTTTTTGGGATATATT
66 GGTTGGCCGGGAATGTCATTTCCGGTAATCTTACATTACCAATAGTGAATTTTTTGAGATATATT
* * * * *
78462 ATCGGGAATTTCATTAACTCCCTTTCATTAGGTATTGTTGGATTACCGGCGTTTTAGACTAAAAT
131 ACCAGGAATGTCATTAACTCCCTTTCATTAGGTATTATTGGATTACCGACGTTTTAGACTAAAAT
* * * *
78527 GCCCGTAAAAAATTTCTTTTAAAAATATCTTTATTTTGTCATTGAATAATAAAAATTCTACGAAT
196 GCCCGTAAAAAAATTCTTTTAAAAATATCATTATTCTGTCATTGAATAATAAAAATTCTACGAAG
* *
78592 GTTAAATTACAAATTTATCCTTAAACTATTTTAGATTTACAAAAAAAAAGTTTATAATTAAAATT
261 GTTAAATTACAAATTTATCCTTAAAATATTTTAGATTTACAAAAAAAAAGTCTATAATTAAAATT
78657 TTATATGAAATTCAGGGGTTAAAATAAAATTTTACCCTTTCATTAAACATTTTTATATTTTCAAT
326 TTATATGAAATTCAGGGGTTAAAATAAAATTTTACCCTTTCATTAAACATTTTTATATTTTCAAT
78722 TTTATAAAACAAATTATATAAATTTTATGAATTTAAATTTTTTAAAGAAAATATATAAATATTTT
391 TTTATAAAACAAATTATATAAATTTTATGAATTTAAATTTTTTAAAGAAAATATATAAATATTTT
* *
78787 TCAACTTATTCAAAAAACAAATATATAATAAGGACAATTTGGTTAAATATACATTCCAATAATCT
456 CCAACTTATTCAAAAAACAAATATATAATAAGGACAATTTGGTCAAATATACATTCCAATAATCT
*
78852 TTTATTCCTTTAACCAAACACGGTAATCTTACATTCCTGCTAAACCAACCAAACACAAAATACAA
521 TTTATTCCTTTAACCAAACACGATAATCTTACATTCCTGCTAAACCAACCAAACACAAAATACAA
* * *
78917 CATTTTCAGTAATACTATTCTCTGGTAATCTTTTATTCACACT-AGTAATCTTATATTTCGTGAA
586 CATTCTCAATAATACTATTCTCTGGTAATCTTTTATTCACACTGA-TAATCTTATATTCCGTGAA
78981 CCAAACGCACCC
650 CCAAACGCACCC
*
78993 TAAGGGTATGTTTGGTTGGGGGAATGTGAGATTCTCATGGGAATAAAATCCACATTCCCCCGTTT
1 TAAGGGTATGTTTGGTTGGGGGAATGTGAGATTCTCATGGGAATAAAATCAACATTCCCCCGTTT
*
79058 GGTTGGCCGGGAATGTCATTAT-CGGTAATCTTATATTACCAATAGTGAATTTTTTGAGATATAT
66 GGTTGGCCGGGAATGTCATT-TCCGGTAATCTTACATTACCAATAGTGAATTTTTTGAGATATAT
* * * *
79122 TACCAGGAATGTCATT-ACATCCCTTTCCTTAGTTATTATTGGATTACTGACG-TTTGGACTAAA
130 TACCAGGAATGTCATTAAC-TCCCTTTCATTAGGTATTATTGGATTACCGACGTTTTAGACTAAA
* *
79185 ATTCCCTTAAAAAAATTCTTTTAAAAATATCATTATTCTGTCATTGAATAATAAAAATTCTACGA
194 ATGCCCGTAAAAAAATTCTTTTAAAAATATCATTATTCTGTCATTGAATAATAAAAATTCTACGA
79250 AGGTTAAATTACAAATTTATCCTTAAAATATTTTAGATTTAC-AAAAAAAA-TCTATAATTAAAA
259 AGGTTAAATTACAAATTTATCCTTAAAATATTTTAGATTTACAAAAAAAAAGTCTATAATTAAAA
*
79313 TTTTATATGAAGTTCAGGGGTTAAAATAAAATTTTACCCTTTCATTAAATC-TTTTTATATTTTC
324 TTTTATATGAAATTCAGGGGTTAAAATAAAATTTTACCCTTTCATTAAA-CATTTTTATATTTTC
* *
79377 AATTTTGTAAAA-AAATTATATAAATTTTATGAATTTAAATTTTTTTAAGAAAATATATAAATAT
388 AATTTTATAAAACAAATTATATAAATTTTATGAATTTAAATTTTTTAAAGAAAATATATAAATAT
* * *
79441 TTTCCAACTTGTT-ATAAAAACAAATATATAATAAGTACAATTTTGTCAAATATACATTCCAATA
453 TTTCCAACTTATTCA-AAAAACAAATATATAATAAGGACAATTTGGTCAAATATACATTCCAATA
* *
79505 ATCTTTTATTCCTTTAACGAAACACGATAATCTTACATTCCTGCTAAACCAACTAAACACAAAAT
517 ATCTTTTATTCCTTTAACCAAACACGATAATCTTACATTCCTGCTAAACCAACCAAACACAAAAT
* *
79570 ATAACATTC-CTAATAAT-CTTATTCTCTGGTAATCTTTTATTCCCACTGATAATCTTATATTCC
582 ACAACATTCTC-AATAATAC-TATTCTCTGGTAATCTTTTATTCACACTGATAATCTTATATTCC
79633 GTGAACCAAACGCACC
645 GTGAACCAAACGCACC
79649 GTAAATGCTA
Statistics
Matches: 605, Mismatches: 44, Indels: 18
0.91 0.07 0.03
Matches are distributed among these distances:
656 3 0.00
657 238 0.39
658 85 0.14
659 9 0.01
660 112 0.19
661 157 0.26
662 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.38
Consensus pattern (661 bp):
TAAGGGTATGTTTGGTTGGGGGAATGTGAGATTCTCATGGGAATAAAATCAACATTCCCCCGTTT
GGTTGGCCGGGAATGTCATTTCCGGTAATCTTACATTACCAATAGTGAATTTTTTGAGATATATT
ACCAGGAATGTCATTAACTCCCTTTCATTAGGTATTATTGGATTACCGACGTTTTAGACTAAAAT
GCCCGTAAAAAAATTCTTTTAAAAATATCATTATTCTGTCATTGAATAATAAAAATTCTACGAAG
GTTAAATTACAAATTTATCCTTAAAATATTTTAGATTTACAAAAAAAAAGTCTATAATTAAAATT
TTATATGAAATTCAGGGGTTAAAATAAAATTTTACCCTTTCATTAAACATTTTTATATTTTCAAT
TTTATAAAACAAATTATATAAATTTTATGAATTTAAATTTTTTAAAGAAAATATATAAATATTTT
CCAACTTATTCAAAAAACAAATATATAATAAGGACAATTTGGTCAAATATACATTCCAATAATCT
TTTATTCCTTTAACCAAACACGATAATCTTACATTCCTGCTAAACCAACCAAACACAAAATACAA
CATTCTCAATAATACTATTCTCTGGTAATCTTTTATTCACACTGATAATCTTATATTCCGTGAAC
CAAACGCACCC
Done.