Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005661.1 Hibiscus syriacus cultivar Beakdansim tig00013234_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 89565
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.34
Found at i:5916 original size:22 final size:22
Alignment explanation
Indices: 5890--5931 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
5880 TCCATTTTGA
* *
5890 ACTTTAAATTTTTTTTTATTTT
1 ACTTTAAATCTATTTTTATTTT
5912 ACTTTAAATCTATTTTTATT
1 ACTTTAAATCTATTTTTATT
5932 ATTAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (22 bp):
ACTTTAAATCTATTTTTATTTT
Found at i:10323 original size:23 final size:23
Alignment explanation
Indices: 10292--10359 Score: 70
Period size: 23 Copynumber: 3.0 Consensus size: 23
10282 ATGCACAACA
*
10292 GAGTTCATCGATGCACATTCAAG
1 GAGTGCATCGATGCACATTCAAG
* *
10315 GAGTGCATCGATACA-ACTTC-AT
1 GAGTGCATCGATGCACA-TTCAAG
*
10337 G-GTGTATCGATGCACATTCAAG
1 GAGTGCATCGATGCACATTCAAG
10359 G
1 G
10360 GATGCATTAG
Statistics
Matches: 36, Mismatches: 6, Indels: 7
0.73 0.12 0.14
Matches are distributed among these distances:
21 14 0.39
22 6 0.17
23 16 0.44
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (23 bp):
GAGTGCATCGATGCACATTCAAG
Found at i:13928 original size:59 final size:59
Alignment explanation
Indices: 13863--14020 Score: 255
Period size: 59 Copynumber: 2.7 Consensus size: 59
13853 GAAGGACCTA
* * *
13863 TCCAGAGGTCACAAAGA-CCCCGGTAACTATCCAGAGGTCATAAAGATCCTCGGTAACTG
1 TCCAGAGGTCATAAAGATCCTCGGTAACTGTCCAGAGGTCAT-AAGATCCTCGGTAACTG
13922 TCCAGAGGTCATAAAGATCCTCGGTAACTGTCCAGAGGTCATAAGATCCTCGGTAACTG
1 TCCAGAGGTCATAAAGATCCTCGGTAACTGTCCAGAGGTCATAAGATCCTCGGTAACTG
* *
13981 TCCAGAGGTCATAAAGATCCTTGGTAACTGTCCATAGGTC
1 TCCAGAGGTCATAAAGATCCTCGGTAACTGTCCAGAGGTC
14021 CCGAAGAACC
Statistics
Matches: 93, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
59 71 0.76
60 22 0.24
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.23
Consensus pattern (59 bp):
TCCAGAGGTCATAAAGATCCTCGGTAACTGTCCAGAGGTCATAAGATCCTCGGTAACTG
Found at i:14037 original size:30 final size:30
Alignment explanation
Indices: 13863--14020 Score: 257
Period size: 30 Copynumber: 5.3 Consensus size: 30
13853 GAAGGACCTA
* * *
13863 TCCAGAGGTCACAAAGA-CCCCGGTAACTA
1 TCCAGAGGTCATAAAGATCCTCGGTAACTG
13892 TCCAGAGGTCATAAAGATCCTCGGTAACTG
1 TCCAGAGGTCATAAAGATCCTCGGTAACTG
13922 TCCAGAGGTCATAAAGATCCTCGGTAACTG
1 TCCAGAGGTCATAAAGATCCTCGGTAACTG
13952 TCCAGAGGTCAT-AAGATCCTCGGTAACTG
1 TCCAGAGGTCATAAAGATCCTCGGTAACTG
*
13981 TCCAGAGGTCATAAAGATCCTTGGTAACTG
1 TCCAGAGGTCATAAAGATCCTCGGTAACTG
*
14011 TCCATAGGTC
1 TCCAGAGGTC
14021 CCGAAGAACC
Statistics
Matches: 122, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
29 45 0.37
30 77 0.63
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.23
Consensus pattern (30 bp):
TCCAGAGGTCATAAAGATCCTCGGTAACTG
Found at i:14037 original size:89 final size:90
Alignment explanation
Indices: 13863--14045 Score: 253
Period size: 89 Copynumber: 2.0 Consensus size: 90
13853 GAAGGACCTA
13863 TCCAGAGGTCACAAAGACCCCGGTAACTATCCAGAGGTCATAAAGATCCTCGGTAACTGTCCAGA
1 TCCAGAGGTCACAAAGACCCCGGTAACTATCCAGAGGTCATAAAGATCCTCGGTAACTGTCCAGA
* * *
13928 GGTCATAAAGATCCTCGGT-AACTG
66 GGTCACAAAGAACCTAGGTAAACTG
* * * * *
13952 TCCAGAGGTCA-TAAGATCCTCGGTAACTGTCCAGAGGTCATAAAGATCCTTGGTAACTGTCCAT
1 TCCAGAGGTCACAAAGA-CCCCGGTAACTATCCAGAGGTCATAAAGATCCTCGGTAACTGTCCAG
* *
14016 AGGTCCCGAAGAACCTAGGTAAACTG
65 AGGTCACAAAGAACCTAGGTAAACTG
14042 TCCA
1 TCCA
14046 TATGTCTAGA
Statistics
Matches: 82, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
88 4 0.05
89 69 0.84
90 9 0.11
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.22
Consensus pattern (90 bp):
TCCAGAGGTCACAAAGACCCCGGTAACTATCCAGAGGTCATAAAGATCCTCGGTAACTGTCCAGA
GGTCACAAAGAACCTAGGTAAACTG
Found at i:16656 original size:20 final size:21
Alignment explanation
Indices: 16617--16656 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
16607 GAAGTTTTAA
* *
16617 GATCATCAATTTTCTTTTGAT
1 GATCATCAATTTACTCTTGAT
16638 GATCATC-ATTTACTCTTGA
1 GATCATCAATTTACTCTTGA
16657 AAGTAAATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.25, C:0.17, G:0.10, T:0.47
Consensus pattern (21 bp):
GATCATCAATTTACTCTTGAT
Found at i:18835 original size:64 final size:65
Alignment explanation
Indices: 18747--18900 Score: 213
Period size: 65 Copynumber: 2.4 Consensus size: 65
18737 TACACTAGGG
* * * * *
18747 GTGCATTGGTACACTAATTACATTCGATGTTTC-AAAGAGCCAAGAGTGCATCGATGCAT-GGTC
1 GTGCATCGGTACACAAAATGCATTCGATGTTTCAAAAGAGCCAAGAGTGCATCGATGCATAGCT-
18810 T
65 T
* **
18811 GTGCATCGGTACACAAAATGCATTCGATGTTTCAAAATATTCAAGAGTGCATCGATGCATAGCTT
1 GTGCATCGGTACACAAAATGCATTCGATGTTTCAAAAGAGCCAAGAGTGCATCGATGCATAGCTT
18876 GTGCATCGGTACACAAAATGCATTC
1 GTGCATCGGTACACAAAATGCATTC
18901 AAAATGGATG
Statistics
Matches: 80, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
64 29 0.36
65 49 0.61
66 2 0.03
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (65 bp):
GTGCATCGGTACACAAAATGCATTCGATGTTTCAAAAGAGCCAAGAGTGCATCGATGCATAGCTT
Found at i:24083 original size:22 final size:23
Alignment explanation
Indices: 24043--24100 Score: 70
Period size: 22 Copynumber: 2.7 Consensus size: 23
24033 TAATTAATTT
*
24043 TATTTTATA-TTT-AACTTAATA
1 TATTTTATATTTTAAACTTAAAA
*
24064 T-TTTTATATTTTAAATTTAAAA
1 TATTTTATATTTTAAACTTAAAA
24086 TATTTT-TATTTTAAA
1 TATTTTATATTTTAAA
24101 AAAATTAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
20 7 0.22
21 4 0.12
22 17 0.53
23 4 0.12
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (23 bp):
TATTTTATATTTTAAACTTAAAA
Found at i:26022 original size:32 final size:32
Alignment explanation
Indices: 25981--26047 Score: 91
Period size: 32 Copynumber: 2.1 Consensus size: 32
25971 ACATGTCATG
* *
25981 TCACTTAATGTAATTATATGATATGT-ATCACA
1 TCACCTAATGTAATGATATGATATGTGA-CACA
*
26013 TCACCTAATGTGATGATATGATATGTGACACA
1 TCACCTAATGTAATGATATGATATGTGACACA
26045 TCA
1 TCA
26048 ATAAATAAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
32 30 0.97
33 1 0.03
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (32 bp):
TCACCTAATGTAATGATATGATATGTGACACA
Found at i:26549 original size:14 final size:14
Alignment explanation
Indices: 26525--26558 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
26515 ATAAACGAGT
26525 AATAT-TCAAATAA
1 AATATATCAAATAA
*
26538 CATATATCAAATAA
1 AATATATCAAATAA
26552 AATATAT
1 AATATAT
26559 TAGTATATCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 4 0.22
14 14 0.78
ACGTcount: A:0.59, C:0.09, G:0.00, T:0.32
Consensus pattern (14 bp):
AATATATCAAATAA
Found at i:27089 original size:66 final size:66
Alignment explanation
Indices: 26967--27090 Score: 144
Period size: 66 Copynumber: 1.9 Consensus size: 66
26957 ACATCATTTA
* ** * *
26967 AAAAATTTAAAGATTTATATAGTATTTCATTTATAATGTATCAAATTATTCTTCATTTAAAAAAA
1 AAAAATTAAAAGATTTATATAGTATTTCATTTATAAAATATCAAATCATTCATCATTTAAAAAAA
27032 T
66 T
* * *
27033 AAAAATTAAAAGATTTATATAGTATTTTAGTCTTATAAAAT-TTACATCATT-ATCATTT
1 AAAAATTAAAAGATTTATATAGTATTTCA-T-TTATAAAATATCAAATCATTCATCATTT
27091 GGTATTTAAA
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
66 33 0.69
67 8 0.17
68 7 0.15
ACGTcount: A:0.44, C:0.06, G:0.05, T:0.44
Consensus pattern (66 bp):
AAAAATTAAAAGATTTATATAGTATTTCATTTATAAAATATCAAATCATTCATCATTTAAAAAAA
T
Found at i:27818 original size:15 final size:15
Alignment explanation
Indices: 27800--27833 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
27790 TGTTCCGTTT
*
27800 AAACACGCACCGTCA
1 AAACACACACCGTCA
*
27815 AAACTCACACCGTCA
1 AAACACACACCGTCA
27830 AAAC
1 AAAC
27834 CCGCGGACTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.44, C:0.38, G:0.09, T:0.09
Consensus pattern (15 bp):
AAACACACACCGTCA
Found at i:31463 original size:12 final size:11
Alignment explanation
Indices: 31457--31529 Score: 76
Period size: 12 Copynumber: 6.2 Consensus size: 11
31447 TTAATATATT
31457 TAATAATAATAA
1 TAATAAT-ATAA
31469 TAATAATGATAA
1 TAATAAT-ATAA
31481 TAATAATAATAA
1 TAATAAT-ATAA
*
31493 TAATAATAATTA
1 TAATAAT-ATAA
31505 TAATAATAATAA
1 TAATAAT-ATAA
31517 TAATTAAT-TAA
1 TAA-TAATATAA
31528 TA
1 TA
31530 TGGGTAAAAA
Statistics
Matches: 56, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
11 5 0.09
12 47 0.84
13 4 0.07
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.37
Consensus pattern (11 bp):
TAATAATATAA
Found at i:31465 original size:3 final size:3
Alignment explanation
Indices: 31457--31520 Score: 110
Period size: 3 Copynumber: 21.3 Consensus size: 3
31447 TTAATATATT
* *
31457 TAA TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA TTA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
31505 TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA T
31521 TAATTAATAT
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:32273 original size:113 final size:113
Alignment explanation
Indices: 31751--32407 Score: 1012
Period size: 114 Copynumber: 5.9 Consensus size: 113
31741 GATAGAGTTA
* *
31751 TTGAACAAGTTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTAT
1 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT---GAGTTCTTCTCATTAT
* * * * * *
31816 GAACTCTAC-CTGGCAATGTTGATCCATCAAATGATGAATTCAAGCAAAAGA
63 GAACT-TTCTCTGGAAATGATGATCCATCAAATGATGAATTCAGGTAAAAGG
31867 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
1 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
* * * *
31932 CTTTCTCTGGAAAAGATAATCCATCAATTTGATGAATTCAGGTAAATGG
66 CTTTCTCTGGAAATGATGATCCATCAA-ATGATGAATTCAGGTAAAAGG
31981 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
1 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
* * * * *
32046 CCTTCTCTGGAAAAGCTAATCCATCAATTTGATGAATTCAGGTAAAAGG
66 CTTTCTCTGGAAATGATGATCCATCAA-ATGATGAATTCAGGTAAAAGG
32095 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
1 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
*
32160 CTTTCTCTGGAAATGATGATCCATCAAATGATGGATTCAGGTAAAAGG
66 CTTTCTCTGGAAATGATGATCCATCAAATGATGAATTCAGGTAAAAGG
32208 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
1 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
*
32273 CTTTCTCTGG-AA--ATGATCCATCAAATGATGGATTCAGGTAAAAGG
66 CTTTCTCTGGAAATGATGATCCATCAAATGATGAATTCAGGTAAAAGG
32318 TTGAACAAA----T-TCATTATGAACTTCTTCTTCC-T-TTCAGATGAGTTCTTCTCATTATGAA
1 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
32376 CTTTCTCTGGAAATGATGATCCATCAAATGAT
66 CTTTCTCTGGAAATGATGATCCATCAAATGAT
32408 AGATTTGAAT
Statistics
Matches: 515, Mismatches: 21, Indels: 20
0.93 0.04 0.04
Matches are distributed among these distances:
103 36 0.07
104 3 0.01
105 21 0.04
106 18 0.03
110 42 0.08
112 4 0.01
113 132 0.26
114 215 0.42
116 44 0.09
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (113 bp):
TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
CTTTCTCTGGAAATGATGATCCATCAAATGATGAATTCAGGTAAAAGG
Found at i:33271 original size:83 final size:83
Alignment explanation
Indices: 33132--33527 Score: 774
Period size: 83 Copynumber: 4.8 Consensus size: 83
33122 GTAGTTCTTA
33132 CCAAACCAGATCAAATAACTCAAAGAACACTTCCAGAAGATGCTATTGACACATTCATCTTCTAA
1 CCAAACCAGATCAAATAACTCAAAGAACACTTCCAGAAGATGCTATTGACACATTCATCTTCTAA
33197 ATTCAATGATTTGTTCTG
66 ATTCAATGATTTGTTCTG
*
33215 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGACACATTCATCTTCTAA
1 CCAAACCAGATCAAATAACTCAAAGAACACTTCCAGAAGATGCTATTGACACATTCATCTTCTAA
33280 ATTCAATGATTTGTTCTG
66 ATTCAATGATTTGTTCTG
33298 CCAAACCAGATCAAATAACTCAAAGAACACTTCCAGAAGATGCTATTGACACATTCATCTTCTAA
1 CCAAACCAGATCAAATAACTCAAAGAACACTTCCAGAAGATGCTATTGACACATTCATCTTCTAA
33363 ATTCAATGATTTGTTCTG
66 ATTCAATGATTTGTTCTG
33381 CCAAACCAGATCAAATAACTCAAAGAACACTTCCAGAAGATGCTATTGACACATTCATCTTCTAA
1 CCAAACCAGATCAAATAACTCAAAGAACACTTCCAGAAGATGCTATTGACACATTCATCTTCTAA
33446 ATTCAATGATTTGTTCTG
66 ATTCAATGATTTGTTCTG
*
33464 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGACACATTCATCTTCTA
1 CCAAACCAGATCAAATAACTCAAAGAACACTTCCAGAAGATGCTATTGACACATTCATCTTCTA
33528 GTTAATGTTT
Statistics
Matches: 310, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 310 1.00
ACGTcount: A:0.37, C:0.23, G:0.11, T:0.28
Consensus pattern (83 bp):
CCAAACCAGATCAAATAACTCAAAGAACACTTCCAGAAGATGCTATTGACACATTCATCTTCTAA
ATTCAATGATTTGTTCTG
Found at i:34675 original size:7 final size:7
Alignment explanation
Indices: 34663--34714 Score: 54
Period size: 7 Copynumber: 7.4 Consensus size: 7
34653 CTTGACCCCC
34663 CTTTTTT
1 CTTTTTT
34670 CTTTTTTT
1 C-TTTTTT
34678 CTCTTTTT
1 CT-TTTTT
*
34686 -TTTCTT
1 CTTTTTT
*
34692 -TTTTCT
1 CTTTTTT
34698 CTTTTTT
1 CTTTTTT
34705 CTTTTTT
1 CTTTTTT
34712 CTT
1 CTT
34715 CTCTTTTTCT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
6 8 0.21
7 18 0.47
8 12 0.32
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (7 bp):
CTTTTTT
Found at i:34685 original size:18 final size:18
Alignment explanation
Indices: 34664--34733 Score: 83
Period size: 18 Copynumber: 3.9 Consensus size: 18
34654 TTGACCCCCC
34664 TTTTTTCTTTTTTTCTCT
1 TTTTTTCTTTTTTTCTCT
34682 TTTTTT-TCTTTTTTCTC-
1 TTTTTTCT-TTTTTTCTCT
34699 TTTTTTC-TTTTTTCTTCT
1 TTTTTTCTTTTTTTC-TCT
*
34717 CTTTTTCTTTCTTTTCT
1 TTTTTTCTTT-TTTTCT
34734 TCAAGCATAA
Statistics
Matches: 45, Mismatches: 1, Indels: 11
0.79 0.02 0.19
Matches are distributed among these distances:
16 7 0.16
17 9 0.20
18 21 0.47
19 3 0.07
20 5 0.11
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (18 bp):
TTTTTTCTTTTTTTCTCT
Found at i:34686 original size:19 final size:19
Alignment explanation
Indices: 34664--34731 Score: 95
Period size: 19 Copynumber: 3.6 Consensus size: 19
34654 TTGACCCCCC
34664 TTTTTTCTTTTTTTCTCTT
1 TTTTTTCTTTTTTTCTCTT
34683 TTTTTTC-TTTTTTCTCTT
1 TTTTTTCTTTTTTTCTCTT
*
34701 TTTTCTT-TTTTCTTCTCTT
1 TTTT-TTCTTTTTTTCTCTT
34720 TTTCTTTCTTTT
1 TTT-TTTCTTTT
34732 CTTCAAGCAT
Statistics
Matches: 44, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
18 15 0.34
19 24 0.55
20 5 0.11
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (19 bp):
TTTTTTCTTTTTTTCTCTT
Found at i:34733 original size:9 final size:10
Alignment explanation
Indices: 34669--34735 Score: 70
Period size: 9 Copynumber: 7.0 Consensus size: 10
34659 CCCCCTTTTT
*
34669 TCTTTTTTTC
1 TCTTTTCTTC
*
34679 TCTTTT-TTT
1 TCTTTTCTTC
34688 TCTTTT-TTC
1 TCTTTTCTTC
34697 TCTTTT-TTC
1 TCTTTTCTTC
*
34706 TTTTTTCTTC
1 TCTTTTCTTC
34716 TCTTTTTCTT-
1 TC-TTTTCTTC
34726 TCTTTTCTTC
1 TCTTTTCTTC
34736 AAGCATAATA
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
9 31 0.62
10 12 0.24
11 7 0.14
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (10 bp):
TCTTTTCTTC
Found at i:38674 original size:3 final size:3
Alignment explanation
Indices: 38666--38723 Score: 91
Period size: 3 Copynumber: 19.3 Consensus size: 3
38656 TTAATATATT
*
38666 TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA TTAA T-A TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA
38711 TAA TAA TAA TAA T
1 TAA TAA TAA TAA T
38724 TAATTAATAT
Statistics
Matches: 51, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
2 2 0.04
3 46 0.90
4 3 0.06
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:38690 original size:21 final size:21
Alignment explanation
Indices: 38666--38732 Score: 93
Period size: 21 Copynumber: 3.2 Consensus size: 21
38656 TTAATATATT
38666 TAATAATAATAATAATG-ATAA
1 TAATAATAATAATAATGAAT-A
*
38687 TAATAATAATAATAATTAATA
1 TAATAATAATAATAATGAATA
*
38708 TAATAATAATAATAATTAAT-
1 TAATAATAATAATAATGAATA
38728 TAATA
1 TAATA
38733 TGGGTAAAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
20 5 0.11
21 37 0.84
22 2 0.05
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.37
Consensus pattern (21 bp):
TAATAATAATAATAATGAATA
Found at i:39477 original size:113 final size:113
Alignment explanation
Indices: 38955--39621 Score: 1111
Period size: 113 Copynumber: 5.9 Consensus size: 113
38945 GATAGAGTTA
* *
38955 TTGAACAAGTTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTAT
1 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT---GAGTTCTTCTCATTAT
* * * * * *
39020 GAACTCTAC-CTGGCAATGTTGATCCATCAAATGATGAATTCAAGCAAAAGA
63 GAACT-TTCTCTGGAAATGATGATCCATCAAATGATGAATTCAGGTAAAAGG
39071 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
1 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
* * *
39136 CTTTCTCTGGAAAAGATAATCCATCAATTTGATGAATTCAGGTAAAAGG
66 CTTTCTCTGGAAATGATGATCCATCAA-ATGATGAATTCAGGTAAAAGG
39185 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
1 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
* * * * *
39250 CCTTCTCTGGAAAAGCTAATCCATCAATTTGATGAATTCAGGTAAAAGG
66 CTTTCTCTGGAAATGATGATCCATCAA-ATGATGAATTCAGGTAAAAGG
39299 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
1 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
*
39364 CTTTCTCTGGAAATGATGATCCATCAAATGATGGATTCAGGTAAAAGG
66 CTTTCTCTGGAAATGATGATCCATCAAATGATGAATTCAGGTAAAAGG
39412 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
1 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
*
39477 CTTTCTCTGGAAATGATGATCCATCAAATGATGGATTCAGGTAAAAGG
66 CTTTCTCTGGAAATGATGATCCATCAAATGATGAATTCAGGTAAAAGG
39525 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
1 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
39590 CTTTCTCTGGAAATGATGATCCATCAAATGAT
66 CTTTCTCTGGAAATGATGATCCATCAAATGAT
39622 AGATTTGAAT
Statistics
Matches: 530, Mismatches: 19, Indels: 7
0.95 0.03 0.01
Matches are distributed among these distances:
112 2 0.00
113 267 0.50
114 217 0.41
116 44 0.08
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (113 bp):
TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
CTTTCTCTGGAAATGATGATCCATCAAATGATGAATTCAGGTAAAAGG
Found at i:40487 original size:83 final size:83
Alignment explanation
Indices: 40348--40660 Score: 574
Period size: 83 Copynumber: 3.8 Consensus size: 83
40338 GTAGTTCTTA
40348 CCAAACCAGATCAAATAACTCAAAGAACACTTCCAGAAGATGCTATTGACACATTCATCTTCTAA
1 CCAAACCAGATCAAATAACTCAAAGAACACTTCCAGAAGATGCTATTGACACATTCATCTTCTAA
40413 ATTCAATGATTTATTCTG
66 ATTCAATGATTTATTCTG
*
40431 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTA-TGAACACATTCATCTTCTA
1 CCAAACCAGATCAAATAACTCAAAGAACACTTCCAGAAGATGCTATTG-ACACATTCATCTTCTA
40495 AATTCAATGATTTATTCTG
65 AATTCAATGATTTATTCTG
*
40514 CCAAACCAGATCAAATAACTCAAAGAACACTTCTAGAAGATGCTATTGACACATTCATCTTCTAA
1 CCAAACCAGATCAAATAACTCAAAGAACACTTCCAGAAGATGCTATTGACACATTCATCTTCTAA
*
40579 ATTCAATGATTTGTTCTG
66 ATTCAATGATTTATTCTG
*
40597 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGACACATTCATCTTCTA
1 CCAAACCAGATCAAATAACTCAAAGAACACTTCCAGAAGATGCTATTGACACATTCATCTTCTA
40661 GTTAATGTTT
Statistics
Matches: 222, Mismatches: 6, Indels: 4
0.96 0.03 0.02
Matches are distributed among these distances:
82 2 0.01
83 218 0.98
84 2 0.01
ACGTcount: A:0.38, C:0.23, G:0.11, T:0.28
Consensus pattern (83 bp):
CCAAACCAGATCAAATAACTCAAAGAACACTTCCAGAAGATGCTATTGACACATTCATCTTCTAA
ATTCAATGATTTATTCTG
Found at i:41816 original size:15 final size:14
Alignment explanation
Indices: 41796--41844 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
41786 CTTGACCCCC
41796 CTTTTTCTTTTTACT
1 CTTTTTCTTTTT-CT
*
41811 CTTTTTCTTTTTCC
1 CTTTTTCTTTTTCT
*
41825 CTTTTT-TTTCTTTT
1 CTTTTTCTTT-TTCT
41839 CTTTTT
1 CTTTTT
41845 TCTTCATTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
13 3 0.10
14 15 0.50
15 12 0.40
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (14 bp):
CTTTTTCTTTTTCT
Found at i:52495 original size:15 final size:13
Alignment explanation
Indices: 52463--52500 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 13
52453 TTTGACAGAA
52463 AAAT-AAATAATG
1 AAATAAAATAATG
52475 AAATAAAATAATTG
1 AAATAAAATAA-TG
52489 CAAATAAAATAA
1 -AAATAAAATAA
52501 AACATATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 4 0.17
13 6 0.26
14 2 0.09
15 11 0.48
ACGTcount: A:0.68, C:0.03, G:0.05, T:0.24
Consensus pattern (13 bp):
AAATAAAATAATG
Found at i:54701 original size:3 final size:3
Alignment explanation
Indices: 54693--54741 Score: 89
Period size: 3 Copynumber: 16.3 Consensus size: 3
54683 TTAATATATT
*
54693 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TTA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
54741 T
1 T
54742 TAATTAATAT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:54702 original size:15 final size:13
Alignment explanation
Indices: 54684--54739 Score: 75
Period size: 12 Copynumber: 4.6 Consensus size: 13
54674 TATATGTATT
*
54684 TAAT-ATATTTAA
1 TAATAATATATAA
54696 TAATAATA-ATAA
1 TAATAATATATAA
54708 TAATAATA-ATAA
1 TAATAATATATAA
54720 TAATAAT-TATAA
1 TAATAATATATAA
54732 TAATAATA
1 TAATAATA
54740 ATTAATTAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
12 37 0.93
13 3 0.08
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
TAATAATATATAA
Found at i:56990 original size:30 final size:32
Alignment explanation
Indices: 56931--56990 Score: 88
Period size: 30 Copynumber: 1.9 Consensus size: 32
56921 CTATTTAAAA
* *
56931 TATATTTATTAATATTTCTAATAACATAATAT
1 TATATTTATTAATATTTATAATAAAATAATAT
56963 TATATTT-TTAATA-TTATAATAAAATAAT
1 TATATTTATTAATATTTATAATAAAATAAT
56991 CAATTATACA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 13 0.50
31 6 0.23
32 7 0.27
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (32 bp):
TATATTTATTAATATTTATAATAAAATAATAT
Found at i:57165 original size:91 final size:87
Alignment explanation
Indices: 57016--57185 Score: 209
Period size: 89 Copynumber: 1.9 Consensus size: 87
57006 TAAAGATATT
* * * * * *
57016 TAAAATATACTAATTAATATTTTTAAAATATAATATAACACTATTACTTTAATAAATAAATAATT
1 TAAAATATACCAATTAATATTTTTAAAATAAAATATAAAAATAATACTTTAATAAATAAATAAAT
57081 TAATTTATAATATTTTTATTTTAA
66 T-ATTT-TAATATTTTTATTTTAA
*
57105 TAAAATATACCAATAATAATATTTTTATTAATAAAATTATAAAAATAATA-TTTAAT-AATAAAT
1 TAAAATATACCAAT--TAATATTTTTA-AAATAAAA-TATAAAAATAATACTTTAATAAATAAAT
57168 AAATTATTTTAATATTTT
62 AAATTATTTTAATATTTT
57186 AAAAATAATA
Statistics
Matches: 70, Mismatches: 7, Indels: 8
0.82 0.08 0.09
Matches are distributed among these distances:
89 22 0.31
90 4 0.06
91 22 0.31
92 12 0.17
93 10 0.14
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.46
Consensus pattern (87 bp):
TAAAATATACCAATTAATATTTTTAAAATAAAATATAAAAATAATACTTTAATAAATAAATAAAT
TATTTTAATATTTTTATTTTAA
Found at i:57370 original size:13 final size:14
Alignment explanation
Indices: 57352--57385 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
57342 AAATGTAATT
57352 CATTTT-AGGAAAA
1 CATTTTCAGGAAAA
*
57365 CATTTTCCGGAAAA
1 CATTTTCAGGAAAA
57379 CATTTTC
1 CATTTTC
57386 TATAAATGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 6 0.32
14 13 0.68
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (14 bp):
CATTTTCAGGAAAA
Found at i:57378 original size:14 final size:14
Alignment explanation
Indices: 57359--57385 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
57349 ATTCATTTTA
57359 GGAAAACATTTTCC
1 GGAAAACATTTTCC
57373 GGAAAACATTTTC
1 GGAAAACATTTTC
57386 TATAAATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.30
Consensus pattern (14 bp):
GGAAAACATTTTCC
Found at i:57441 original size:14 final size:14
Alignment explanation
Indices: 57395--57467 Score: 56
Period size: 14 Copynumber: 5.1 Consensus size: 14
57385 CTATAAATGT
57395 AATTCATTTTTCAG
1 AATTCATTTTTCAG
* * * *
57409 GATTCAATTTCTAAT
1 AATTC-ATTTTTCAG
*
57424 AATTCATTTTTTAG
1 AATTCATTTTTCAG
* *
57438 AATTCAATTTCCAG
1 AATTCATTTTTCAG
* *
57452 AATTCAATTTCCAG
1 AATTCATTTTTCAG
57466 AA
1 AA
57468 AACTAATTAC
Statistics
Matches: 47, Mismatches: 11, Indels: 2
0.78 0.18 0.03
Matches are distributed among these distances:
14 37 0.79
15 10 0.21
ACGTcount: A:0.34, C:0.15, G:0.07, T:0.44
Consensus pattern (14 bp):
AATTCATTTTTCAG
Found at i:57461 original size:29 final size:29
Alignment explanation
Indices: 57395--57467 Score: 85
Period size: 29 Copynumber: 2.6 Consensus size: 29
57385 CTATAAATGT
* *
57395 AATTCATTTTTCAGGATTCAATTTCTAAT
1 AATTCATTTTTCAGAATTCAATTTCTAAG
* *
57424 AATTCATTTTTTAGAATTCAATTTC-CAG
1 AATTCATTTTTCAGAATTCAATTTCTAAG
* *
57452 AATTCAATTTCCAGAA
1 AATTCATTTTTCAGAA
57468 AACTAATTAC
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
28 14 0.38
29 23 0.62
ACGTcount: A:0.34, C:0.15, G:0.07, T:0.44
Consensus pattern (29 bp):
AATTCATTTTTCAGAATTCAATTTCTAAG
Found at i:62423 original size:14 final size:14
Alignment explanation
Indices: 62401--62431 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
62391 TTAAGTATGC
62401 TTTTAATTATTTGA
1 TTTTAATTATTTGA
*
62415 TTTTGATTATTTGA
1 TTTTAATTATTTGA
62429 TTT
1 TTT
62432 CTTATTTAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.23, C:0.00, G:0.10, T:0.68
Consensus pattern (14 bp):
TTTTAATTATTTGA
Found at i:63363 original size:126 final size:120
Alignment explanation
Indices: 63128--63372 Score: 418
Period size: 126 Copynumber: 2.0 Consensus size: 120
63118 CAACAATTTG
63128 TATCTTTTTCATTAAACATTTTATTAAGGGGGAGTTTTGCCAAATTTTTCAAATGTTTTGTTATC
1 TATCTTTTTCATTAAACATTTTATTAAGGGGGAGTTTTGCCAAATTTTTCAAATGTTTTGTTATC
*
63193 AAAGAGGGGGAGATTGTTGAACTATATTTTGATATAACAATTTAAGGCAAAATGA
66 AAAAAGGGGGAGATTGTTGAACTATATTTTGATATAACAATTTAAGGCAAAATGA
63248 TATCTTTTTCATTAAACATTTTATTAAGGGGGAGTTTTGCCAAATTTCTTTTTCAAATGTTTTGT
1 TATCTTTTTCATTAAACATTTTATTAAGGGGGAGTTTTGCCAAA----TTTTTCAAATGTTTTG-
*
63313 TATATCAAAAAGGGGGAGATTGTTGAACTATATTTTGATATAACAGTTTAAGGCAAAATG
61 T-TATCAAAAAGGGGGAGATTGTTGAACTATATTTTGATATAACAATTTAAGGCAAAATG
63373 TTTTTGGACT
Statistics
Matches: 117, Mismatches: 2, Indels: 6
0.94 0.02 0.05
Matches are distributed among these distances:
120 44 0.38
124 16 0.14
125 1 0.01
126 56 0.48
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.41
Consensus pattern (120 bp):
TATCTTTTTCATTAAACATTTTATTAAGGGGGAGTTTTGCCAAATTTTTCAAATGTTTTGTTATC
AAAAAGGGGGAGATTGTTGAACTATATTTTGATATAACAATTTAAGGCAAAATGA
Found at i:69442 original size:30 final size:30
Alignment explanation
Indices: 69408--69472 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 30
69398 GGAGTGGTTT
* * *
69408 TAGAAAATTCTAGATCTTTCTGGAGAAGGG
1 TAGAAAATTCTAGAGCATTCCGGAGAAGGG
** *
69438 TAGAATTTTCTAGAGCATTCCGGAGAAGTG
1 TAGAAAATTCTAGAGCATTCCGGAGAAGGG
69468 TAGAA
1 TAGAA
69473 TTCTCTAGAA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.34, C:0.11, G:0.26, T:0.29
Consensus pattern (30 bp):
TAGAAAATTCTAGAGCATTCCGGAGAAGGG
Found at i:69473 original size:30 final size:30
Alignment explanation
Indices: 69415--69481 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
69405 TTTTAGAAAA
* * *
69415 TTCTAGATCTTTCTGGAGAAGGGTAGAATT
1 TTCTAGAGCATTCCGGAGAAGGGTAGAATT
*
69445 TTCTAGAGCATTCCGGAGAAGTGTAGAATT
1 TTCTAGAGCATTCCGGAGAAGGGTAGAATT
*
69475 CTCTAGA
1 TTCTAGA
69482 AGCTTGTGGA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.33
Consensus pattern (30 bp):
TTCTAGAGCATTCCGGAGAAGGGTAGAATT
Found at i:69548 original size:20 final size:20
Alignment explanation
Indices: 69525--69566 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
69515 TTCTGGAGAT
69525 GTGTGGAACCTTATGGAAGA
1 GTGTGGAACCTTATGGAAGA
*
69545 GTGTGGAATCTTATGGAAGA
1 GTGTGGAACCTTATGGAAGA
69565 GT
1 GT
69567 ATAGAAGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.07, G:0.36, T:0.29
Consensus pattern (20 bp):
GTGTGGAACCTTATGGAAGA
Found at i:76722 original size:32 final size:32
Alignment explanation
Indices: 76681--76743 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
76671 GGTAACCTTG
* *
76681 GATAGGCTCTGAGGCCCCAAGGCATTTCTTTA
1 GATAGGCTCTAAGGCCCCAAGGCACTTCTTTA
*
76713 GATAGGCTCTAAGGCCCCAAGGTACTTCTTT
1 GATAGGCTCTAAGGCCCCAAGGCACTTCTTT
76744 GGGTACGCTC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.22, C:0.25, G:0.24, T:0.29
Consensus pattern (32 bp):
GATAGGCTCTAAGGCCCCAAGGCACTTCTTTA
Found at i:76760 original size:32 final size:32
Alignment explanation
Indices: 76681--76797 Score: 83
Period size: 32 Copynumber: 3.7 Consensus size: 32
76671 GGTAACCTTG
* * * *
76681 GATAGGCTCTGAGGCCCCAAGGCATTTCTTTA
1 GATACGCTCTAAGGCCCCAAGGTACTTCTTTA
* *
76713 GATAGGCTCTAAGGCCCCAAGGTACTTCTTTG
1 GATACGCTCTAAGGCCCCAAGGTACTTCTTTA
* ** * *
76745 GGTACGCTC-ATAGGCCTTAAGGTACTACCTTA
1 GATACGCTCTA-AGGCCCCAAGGTACTTCTTTA
* * * *
76777 GTTAGGATCTAAGGCTCCAAG
1 GATACGCTCTAAGGCCCCAAG
76798 ATATTCCCTT
Statistics
Matches: 66, Mismatches: 17, Indels: 4
0.76 0.20 0.05
Matches are distributed among these distances:
31 1 0.02
32 64 0.97
33 1 0.02
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.27
Consensus pattern (32 bp):
GATACGCTCTAAGGCCCCAAGGTACTTCTTTA
Found at i:86073 original size:15 final size:16
Alignment explanation
Indices: 86053--86087 Score: 63
Period size: 15 Copynumber: 2.2 Consensus size: 16
86043 AAACATGTGC
86053 ACTTAAGCAAC-AGGA
1 ACTTAAGCAACGAGGA
86068 ACTTAAGCAACGAGGA
1 ACTTAAGCAACGAGGA
86084 ACTT
1 ACTT
86088 TGAATTTTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 11 0.58
16 8 0.42
ACGTcount: A:0.43, C:0.20, G:0.20, T:0.17
Consensus pattern (16 bp):
ACTTAAGCAACGAGGA
Done.