genome.fa.s5662.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005662.1 Hibiscus syriacus cultivar Beakdansim tig00013237_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70815

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100--244	68	2.1	72	85	8	201	22	17	17	43	1.88
4048--4084	13	2.8	13	100	0	74	0	64	18	16	1.29
14507--14565	27	2.2	26	84	3	73	30	5	3	61	1.34
14784--14887	20	5.2	20	84	4	111	29	23	19	27	1.98
18009--18036	12	2.3	12	100	0	56	64	14	14	7	1.48
18111--18380	140	1.9	140	97	0	513	28	12	15	42	1.83
18379--18594	54	3.9	53	78	12	229	33	22	18	25	1.96
18359--18499	74	1.9	74	92	0	237	34	24	15	26	1.95
18351--18617	74	3.5	74	73	15	215	32	21	18	26	1.97
18359--18679	94	3.4	94	82	5	357	33	22	18	25	1.97
18351--18635	114	2.5	114	84	2	385	32	21	18	27	1.97
18351--18635	20	14.9	20	79	10	299	32	21	18	27	1.97
18678--18731	20	2.7	20	88	0	72	12	18	24	44	1.85
18830--18891	14	4.3	14	77	6	61	46	14	0	38	1.45
20879--20924	20	2.4	19	89	7	67	39	28	17	15	1.90
20968--21015	20	2.4	20	89	0	69	18	18	27	35	1.95
22923--22986	20	3.2	20	93	0	101	34	25	18	21	1.96
23617--23723	20	5.3	20	88	0	142	25	20	25	28	1.99
23617--23747	40	3.3	40	83	2	120	25	20	23	30	1.99
26671--26887	118	1.8	119	81	6	262	38	6	5	49	1.53
28096--28191	46	2.1	47	80	9	108	35	14	16	33	1.89
28500--28556	20	3.0	20	76	5	55	19	21	8	50	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28542--28584	15	2.9	15	96	0	77	20	13	4	60	1.51
28838--28921	42	2.0	42	80	0	96	51	9	20	19	1.74
30030--30217	97	1.9	97	96	0	349	37	19	21	21	1.95
33273--33348	31	2.4	31	74	12	82	28	14	18	38	1.90
35136--35930	137	5.8	137	88	0	1092	34	25	15	24	1.95
37072--37322	118	2.1	118	78	6	265	37	5	6	50	1.51
43333--43396	31	2.1	31	91	5	103	29	14	29	26	1.95
44995--45066	31	2.3	31	85	0	99	36	15	23	25	1.94
46198--46250	20	2.7	20	96	0	97	24	26	11	37	1.89
48855--48886	14	2.1	16	88	11	50	46	3	3	46	1.34
56366--56426	12	5.1	12	72	7	52	18	14	16	50	1.78
56355--56426	24	3.0	24	85	0	99	19	13	16	50	1.79
59693--59724	11	2.9	11	90	0	55	37	0	31	31	1.58
59752--59860	35	3.1	35	81	7	132	33	3	36	26	1.74
64092--64134	15	2.9	15	100	0	86	55	0	27	16	1.41
64285--64393	35	3.1	35	83	7	132	33	3	37	25	1.74

Tables:   1

The End!