Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005664.1 Hibiscus syriacus cultivar Beakdansim tig00013241_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71657

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11291--11327
18
1.9
18
89
10
56
29
0
2
67
1.04
17732--17788
29
2.0
29
100
0
114
36
7
21
35
1.80
19953--19987
17
1.9
18
88
11
54
31
11
0
57
1.34
23364--23422
31
1.9
31
86
6
84
40
16
18
23
1.91
24262--24309
18
2.8
16
78
15
51
43
0
2
54
1.12
28389--28435
18
2.8
17
87
9
69
63
14
2
19
1.40
36103--36153
14
3.7
14
89
5
86
60
0
0
39
0.97
36095--36157
27
2.3
27
100
0
126
65
0
0
34
0.93
36136--36191
26
2.1
28
80
12
64
64
1
3
30
1.21
36478--36564
33
2.6
34
88
1
124
26
9
19
44
1.80
36491--36564
33
2.2
33
95
0
130
24
8
18
48
1.75
36612--36675
8
7.8
8
80
16
53
73
0
0
26
0.84
36614--36675
16
3.8
15
82
18
63
72
0
0
27
0.85
36639--36672
4
8.5
4
87
12
52
73
0
0
26
0.83
36613--36672
12
5.3
11
82
17
70
73
0
0
26
0.84
36612--36675
29
2.2
31
81
18
84
73
0
0
26
0.84
37017--37784
84
9.2
84
75
6
562
24
18
24
32
1.97
36998--37765
165
4.6
164
77
5
643
24
18
24
32
1.97
37033--37791
249
3.0
249
86
1
991
24
18
24
32
1.97
37893--38438
110
5.0
110
89
1
805
23
18
23
34
1.96
41101--41133
16
2.0
17
88
5
50
24
30
12
33
1.91
41434--41592
65
2.4
64
95
2
282
38
19
20
21
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42221--42249
2
14.5
2
100
0
58
51
0
0
48
1.00
42287--42331
16
2.8
17
75
18
51
73
0
6
20
1.05
42704--42779
3
26.0
3
77
17
72
71
0
0
28
0.87
45567--45688
33
3.7
33
78
7
124
47
4
4
43
1.44
45775--45808
17
1.9
18
88
5
52
61
2
0
35
1.11
46695--46868
90
1.9
90
88
0
258
32
16
17
33
1.92
48578--48631
23
2.4
22
82
14
65
27
11
11
50
1.72
48589--48632
23
1.9
23
90
9
72
31
9
11
47
1.71
57136--57173
15
2.4
17
82
13
53
73
7
5
13
1.22
57132--57211
39
2.1
39
83
6
101
73
8
3
13
1.20
57140--57218
19
4.1
19
77
9
70
73
7
3
15
1.20
57693--57756
10
5.8
12
70
26
52
57
0
3
39
1.14
60291--60433
76
1.9
74
81
2
169
11
20
13
54
1.70
70734--70772
15
2.4
16
83
12
53
74
7
5
12
1.20
70734--70817
19
4.3
19
77
10
71
73
7
3
15
1.18
70854--70918
23
2.8
22
71
17
60
69
6
4
20
1.28
70993--71033
21
2.0
20
85
4
55
53
2
24
19
1.57
71300--71335
19
1.9
18
88
5
54
58
2
2
36
1.27

Tables:   1

The End!