genome.fa.s5665.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005665.1 Hibiscus syriacus cultivar Beakdansim tig00013247_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61548

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11320--11553	110	2.2	106	83	6	283	35	24	17	23	1.95
12892--12960	24	3.2	20	70	23	59	24	4	0	71	1.05
12936--12975	14	2.7	14	84	7	53	32	2	0	65	1.06
13043--13119	38	2.1	37	85	9	104	27	5	2	64	1.27
13114--13174	18	3.5	18	78	8	56	21	3	0	75	0.94
13164--13247	36	2.3	35	78	11	89	21	3	4	70	1.22
13362--13400	18	2.2	17	82	13	51	17	2	2	76	1.01
13381--13407	12	2.2	12	100	0	54	14	0	0	85	0.61
13387--13448	26	2.3	28	78	10	76	14	3	6	75	1.12
20730--20766	18	2.1	18	89	0	56	62	0	0	37	0.96
20740--20785	23	2.0	22	83	4	56	58	0	0	41	0.98
22209--22253	21	2.1	21	87	0	63	31	28	24	15	1.96
23430--23647	103	2.1	103	93	0	373	26	13	24	36	1.92
23663--23723	23	2.7	23	89	0	95	19	26	27	26	1.99
27463--27507	21	2.1	21	87	0	63	31	28	24	15	1.96
28688--28905	103	2.1	103	96	0	400	25	13	24	36	1.92
28922--28981	23	2.6	23	84	5	77	20	25	28	26	1.99
28912--28989	23	3.3	23	80	1	75	23	19	23	34	1.96
30334--30374	21	2.0	21	95	0	73	34	26	9	29	1.88
33924--34081	21	7.8	20	72	7	86	38	25	17	18	1.92
34047--34100	20	2.7	19	91	5	81	44	24	18	12	1.85
34087--34318	20	11.6	19	78	8	221	37	24	16	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34048--34318	40	6.8	39	85	5	193	39	23	16	19	1.92
34087--34318	60	3.8	60	82	4	270	37	24	16	21	1.93
34067--34318	101	2.5	101	82	7	264	38	24	16	20	1.92
34979--35033	24	2.3	24	83	0	65	27	14	20	38	1.91
35000--35046	24	2.0	24	87	8	69	25	14	21	38	1.92
37539--37722	33	5.2	34	75	16	144	46	17	21	14	1.83
37525--37628	33	3.1	33	86	8	147	46	19	21	13	1.84
37539--37760	19	12.7	19	76	18	241	45	18	21	14	1.85
37567--37754	52	3.6	52	90	5	265	46	17	22	14	1.83
37606--37760	71	2.2	71	97	0	292	45	17	21	15	1.85
37625--37754	33	3.8	33	87	9	197	46	17	21	14	1.84
37539--37760	52	4.2	52	86	6	229	45	18	21	14	1.85
37769--37866	19	5.4	19	84	13	143	14	22	17	45	1.84
37750--37866	53	2.2	53	96	1	218	13	24	17	43	1.86
37973--38009	14	2.6	14	91	0	65	45	21	0	32	1.52
39987--40043	14	3.7	14	77	20	60	45	22	21	10	1.82
39968--40060	33	2.8	33	95	0	168	47	21	20	10	1.80
39931--40065	19	7.6	19	76	16	128	45	23	19	11	1.82
40061--40151	33	2.8	33	91	5	141	7	18	28	45	1.77
40061--40188	19	7.3	19	72	18	107	9	17	28	45	1.79
40236--40704	93	5.1	93	99	0	913	45	19	12	22	1.83
42408--42461	14	3.5	14	73	22	54	44	22	24	9	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42422--42485	19	3.7	19	68	23	59	45	21	21	10	1.83
42400--42480	33	2.5	33	95	2	146	48	19	22	9	1.78
42481--42539	19	3.4	18	71	22	54	8	18	27	45	1.78
42497--42553	14	3.7	14	72	20	51	8	22	24	43	1.81
42481--42561	33	2.5	33	93	0	135	8	20	23	46	1.78
42537--42614	41	1.9	41	97	0	147	12	25	16	44	1.83
42538--42613	21	3.7	21	83	3	109	11	25	17	46	1.82
42693--42763	33	2.2	33	92	0	115	47	18	22	11	1.80
42944--42998	22	2.5	22	81	0	74	20	16	40	23	1.91
43140--43290	20	7.7	20	79	8	157	18	18	27	35	1.94
43277--43359	21	4.0	21	73	6	78	25	16	24	33	1.96
43257--43355	42	2.4	43	77	11	100	21	18	23	37	1.94

Tables:   1

The End!