Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005666.1 Hibiscus syriacus cultivar Beakdansim tig00013248_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57060

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11931--11966
16
2.2
16
95
0
63
44
19
19
16
1.87
16355--16515
80
2.0
80
90
0
250
27
22
24
24
2.00
16509--16617
32
3.4
32
87
2
130
27
28
26
17
1.98
16498--16617
64
1.9
64
82
6
154
25
27
28
19
1.98
17666--17729
27
2.3
28
83
5
76
18
7
25
48
1.75
17771--17802
9
3.6
9
95
0
55
21
18
0
59
1.38
29384--29473
45
2.0
43
80
18
96
65
2
10
22
1.34
30341--30398
6
9.3
6
77
18
57
79
0
1
18
0.82
30341--30419
34
2.2
36
84
13
101
74
3
2
18
1.08
30458--30863
36
11.4
35
79
11
323
44
5
3
45
1.45
30497--30565
29
2.3
29
85
2
93
43
4
4
47
1.42
30529--30863
109
3.1
107
84
6
406
44
6
4
45
1.48
30529--30861
145
2.3
142
84
7
418
44
6
4
45
1.48
30529--30863
36
9.2
36
80
12
366
44
6
4
45
1.48
30541--30879
143
2.4
142
82
6
364
46
6
3
43
1.47
31468--32489
84
12.3
84
78
6
1021
25
19
24
30
1.98
31468--32489
249
4.1
249
88
1
1451
25
19
24
30
1.98
33673--33852
95
1.9
95
93
4
310
28
21
19
31
1.97
37288--37316
12
2.3
13
94
5
51
55
0
6
37
1.27
38494--38561
33
2.0
33
83
11
84
73
2
4
19
1.13
38645--38713
29
2.4
28
83
9
84
44
4
4
46
1.43
38675--38913
36
6.2
35
74
20
185
44
6
3
44
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38706--38807
50
2.1
49
90
1
159
46
5
3
44
1.46
38753--38959
36
5.5
39
82
12
254
44
5
2
46
1.40
39628--39703
16
4.5
17
71
11
57
61
0
5
32
1.18
39622--39700
25
3.1
25
70
10
70
62
0
5
32
1.17
39887--39945
21
2.7
22
76
5
75
22
25
20
32
1.98
39934--40005
20
3.6
20
92
3
110
36
18
20
25
1.95
39930--40040
20
5.6
20
88
4
109
33
20
18
27
1.96
39930--40060
40
3.3
40
78
8
115
32
22
18
27
1.97
39974--40061
20
4.4
20
86
2
88
28
26
17
28
1.97
41040--41074
18
1.9
18
88
0
52
54
22
2
20
1.58
41771--41836
20
3.4
18
82
12
62
40
24
16
18
1.90
41782--41837
20
2.8
20
91
0
94
41
21
17
19
1.91
41880--41947
20
3.4
20
87
0
91
19
17
25
38
1.93
42095--42162
18
3.8
18
100
0
136
41
5
20
32
1.76
43890--43963
20
3.7
20
87
0
85
44
24
16
14
1.85
44360--44420
22
2.8
22
92
0
104
19
14
39
26
1.90
44601--44738
20
6.9
20
88
0
186
26
21
24
28
1.99
45375--45408
16
2.1
16
100
0
68
35
29
5
29
1.81
48713--48785
20
3.6
19
78
14
74
35
16
20
27
1.94
54556--54628
24
3.2
24
73
15
91
32
16
17
32
1.93
55575--55602
12
2.3
12
100
0
56
50
0
0
50
1.00
55797--55835
20
2.1
19
85
9
53
33
2
2
61
1.23

Tables:   1

The End!