genome.fa.s5667.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005667.1 Hibiscus syriacus cultivar Beakdansim tig00013256_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107325

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2636--2695	23	2.6	23	89	0	93	18	26	28	26	1.98
4040--4091	27	1.9	27	84	0	68	59	11	11	17	1.60
6241--6467	122	1.9	123	88	4	352	48	15	13	22	1.81
6241--6493	122	2.0	122	86	6	321	49	14	14	22	1.79
6481--6544	29	2.2	29	83	10	78	57	3	9	29	1.45
14258--14296	21	1.9	21	94	5	71	38	35	10	15	1.81
20478--20524	14	3.4	14	87	0	67	31	19	23	25	1.98
20526--20568	14	2.9	15	82	6	61	20	23	32	23	1.98
21110--21175	23	2.9	23	93	0	105	36	21	19	22	1.95
29636--29662	13	2.1	13	100	0	54	7	59	33	0	1.25
30453--30537	3	28.7	3	92	2	145	67	0	0	32	0.91
30832--31843	113	8.9	113	92	1	1418	30	19	14	36	1.91
32486--32952	83	5.6	83	94	1	812	38	22	12	26	1.90
33660--33704	18	2.6	17	89	6	65	55	6	6	31	1.52
34031--34101	6	12.2	6	85	14	96	0	12	0	87	0.55
34033--34102	1	70.0	1	76	0	68	0	11	0	88	0.51
34031--34101	17	4.1	17	87	12	108	0	12	0	87	0.55
34031--34103	18	4.1	18	89	7	114	0	13	0	86	0.58
44708--44744	15	2.7	15	88	12	53	62	8	5	24	1.44
44735--44785	18	2.9	17	75	16	50	72	1	0	25	0.95
46960--47056	3	32.7	3	93	2	169	67	0	0	32	0.91
57431--57655	41	5.2	42	77	8	213	34	18	22	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57434--57655	86	2.6	87	85	5	274	34	18	22	25	1.96
65965--66157	41	4.6	41	75	9	124	35	20	17	26	1.95
66268--66396	40	3.2	40	81	7	127	42	15	13	27	1.85
66385--66538	82	1.9	82	82	8	197	31	17	17	33	1.93
68146--68247	48	2.1	48	89	1	152	25	22	21	30	1.99
72392--72418	3	9.0	3	100	0	54	66	33	0	0	0.92
77128--77166	2	19.5	2	100	0	78	48	0	0	51	1.00
77636--77771	3	45.3	3	100	0	272	66	0	0	33	0.92
78408--78448	3	14.0	3	92	5	66	63	2	0	34	1.08
78714--78967	114	2.2	115	85	4	336	27	21	15	35	1.94
79044--79264	117	1.9	118	84	2	302	25	20	15	38	1.92
82373--82415	20	2.2	20	87	8	61	39	9	11	39	1.74
85546--85621	23	3.3	23	92	0	116	28	27	23	19	1.98
86601--86641	21	2.0	21	90	9	66	31	17	26	24	1.97
95748--95777	2	15.5	2	93	6	53	46	0	0	53	1.00
96227--96270	3	15.0	3	95	4	81	65	0	0	34	0.93
98712--98944	119	2.0	120	81	4	274	38	15	14	32	1.87
98833--98977	60	2.4	59	81	4	148	40	15	11	32	1.83
99791--99971	73	2.4	75	88	5	269	39	10	16	34	1.82
99946--100017	23	3.1	23	89	0	108	36	13	12	37	1.83
99992--100164	75	2.4	74	87	4	244	39	13	15	32	1.85
99806--100258	193	2.3	192	87	4	617	37	13	15	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100139--100189	23	2.2	23	96	0	93	39	17	11	31	1.86
100139--100210	23	3.1	23	86	7	85	37	19	13	29	1.90
101841--101944	35	2.9	36	75	16	126	42	5	3	48	1.45
102926--102968	16	2.7	15	79	10	50	53	0	2	44	1.13
105124--105193	20	3.5	20	77	11	54	34	14	20	31	1.92
107234--107289	22	2.6	21	94	5	103	14	42	26	16	1.86

Tables:   1

The End!