Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005668.1 Hibiscus syriacus cultivar Beakdansim tig00013257_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65338

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9176--9787
54
11.5
54
85
5
646
23
25
16
34
1.96
10569--10606
16
2.3
16
95
4
67
26
7
28
36
1.84
20255--20299
21
2.1
21
87
0
63
31
28
24
15
1.96
20774--20805
2
16.0
2
100
0
64
50
0
0
50
1.00
21578--21674
32
3.1
32
78
14
128
28
17
18
35
1.94
21577--21677
31
3.2
31
81
10
125
28
18
18
33
1.95
21665--21758
30
3.1
30
87
3
127
20
21
26
31
1.98
23515--23560
19
2.4
20
85
7
69
78
0
8
13
0.97
23534--23559
8
3.2
8
100
0
52
76
0
11
11
1.01
24557--24925
55
6.7
55
89
1
499
29
15
24
29
1.96
29691--29839
72
2.1
71
93
1
253
26
15
9
48
1.75
30442--30537
43
2.2
43
87
7
149
33
20
19
26
1.97
34870--34946
21
3.4
22
71
18
61
28
20
24
25
1.99
34870--34966
44
2.2
44
83
10
119
27
18
23
29
1.98
43928--43952
13
1.9
13
100
0
50
40
12
24
24
1.88
44996--45049
28
2.0
27
81
3
63
62
3
3
29
1.29
47332--47377
12
3.6
12
81
16
56
45
17
19
17
1.85
47338--47378
12
3.1
13
80
19
57
46
14
17
21
1.84
49666--49705
21
1.9
21
94
0
71
30
15
7
47
1.72
49700--49797
32
3.0
33
86
4
128
34
6
13
45
1.68
49808--49837
13
2.3
13
94
0
51
40
3
10
46
1.54
50033--50085
21
2.5
21
93
0
88
22
20
26
30
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50255--50311
15
3.7
15
79
9
69
38
12
7
42
1.70
50274--50307
18
1.9
18
94
5
61
44
11
5
38
1.65
58366--58405
21
2.0
21
85
14
57
62
7
0
30
1.23
58738--58788
19
2.7
19
96
0
93
15
1
41
41
1.58
59356--59427
3
24.0
3
100
0
144
33
0
0
66
0.92

Tables:   1

The End!