Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005670.1 Hibiscus syriacus cultivar Beakdansim tig00013259_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  132800

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1555--1607
20
2.7
20
87
0
79
28
33
15
22
1.94
8199--8851
107
6.1
108
82
4
777
35
16
16
31
1.91
8198--8851
54
12.2
53
83
5
719
35
16
16
31
1.91
8197--8851
161
4.1
162
83
3
788
35
16
16
30
1.91
16938--16968
2
15.0
2
93
6
53
48
0
3
48
1.17
23304--23392
2
44.5
2
100
0
178
50
0
0
49
1.00
32688--32727
18
2.2
18
95
0
71
37
12
32
17
1.87
43419--43487
36
1.9
36
88
5
104
26
14
30
28
1.95
43803--43843
21
2.0
21
85
0
55
51
12
9
26
1.70
46978--47028
16
2.9
17
80
11
59
23
15
29
31
1.95
46977--47060
36
2.4
36
85
2
116
26
13
29
30
1.93
57175--57293
24
5.0
24
95
2
204
42
19
13
24
1.87
58330--58433
2
56.0
2
70
14
71
50
0
0
49
1.00
58345--58433
38
2.3
38
84
7
135
51
0
0
48
1.00
60312--60353
22
1.9
22
85
9
59
38
28
4
28
1.77
62051--62091
19
2.2
19
95
0
73
9
14
19
56
1.66
63498--63575
26
3.0
26
81
5
97
44
5
21
28
1.73
65583--65626
23
1.9
23
85
0
61
25
6
11
56
1.58
75290--75340
25
2.1
24
85
3
66
62
13
1
21
1.40
76204--76242
19
2.1
19
86
13
55
58
5
5
30
1.41
77585--77689
29
3.6
29
91
5
176
41
18
7
32
1.78
83389--83427
19
2.1
19
86
13
55
58
5
5
30
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
84677--84803
58
2.2
58
88
0
182
44
16
5
33
1.71
84677--84802
29
4.3
29
83
2
155
44
15
5
34
1.70
87158--87189
2
16.0
2
100
0
64
50
0
0
50
1.00
89643--89714
21
3.4
21
100
0
144
29
26
19
25
1.99
94681--94715
18
1.9
18
88
0
52
54
0
17
28
1.43
103981--104012
16
1.9
17
93
6
57
56
0
18
25
1.42
104178--104211
2
17.0
2
100
0
68
50
0
0
50
1.00
112390--112421
15
2.1
15
94
0
55
34
6
3
56
1.40
117853--117931
32
2.5
32
85
4
97
35
16
21
26
1.94
119731--119767
15
2.4
16
90
4
58
78
8
10
2
1.06
122883--122932
19
2.6
19
75
15
57
56
20
8
16
1.65
125369--125468
19
5.3
20
71
21
65
37
3
0
60
1.12

Tables:   1

The End!