genome.fa.s5675.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005675.1 Hibiscus syriacus cultivar Beakdansim tig00013273_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68350

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7389--7505	39	3.0	40	80	7	150	30	24	25	18	1.98
9618--9649	2	16.0	2	100	0	64	50	0	0	50	1.00
10673--10734	23	2.7	23	79	0	79	19	24	22	33	1.97
10847--10927	39	2.1	37	80	13	85	30	4	23	40	1.76
14951--14988	2	19.0	2	100	0	76	0	0	50	50	1.00
17486--17565	35	2.3	35	85	8	108	45	16	0	38	1.47
22681--22740	20	2.8	21	87	7	77	18	23	35	23	1.96
28498--28552	21	2.6	21	91	8	94	16	25	43	14	1.86
30624--30693	20	3.5	20	77	11	54	31	21	14	32	1.93
30644--30693	20	2.5	20	80	3	57	34	22	14	30	1.93
33946--34049	35	2.9	36	75	16	117	48	3	5	42	1.45
35693--35764	23	3.1	23	88	4	83	29	13	19	37	1.90
35739--35914	75	2.3	75	89	1	264	32	14	13	39	1.85
35889--35960	23	3.1	23	89	0	108	37	12	13	36	1.83
35644--36096	196	2.3	196	89	1	676	33	15	13	37	1.87
35814--36035	121	1.8	121	86	1	320	34	14	13	38	1.85
35935--36117	75	2.4	75	91	0	294	33	15	12	38	1.85
37378--37420	18	2.5	17	85	7	61	67	2	4	25	1.22
37313--37432	51	2.5	51	80	9	117	61	3	3	31	1.28
37777--37881	37	2.8	37	86	0	138	30	12	14	42	1.82
38424--38980	105	5.3	105	87	4	732	21	18	26	33	1.96
39153--39222	36	1.9	36	91	0	113	35	15	24	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39221--39302	39	2.1	40	83	2	103	40	12	20	26	1.88
39222--39432	105	2.0	104	95	0	377	38	11	19	29	1.88
39335--39409	39	1.9	39	86	5	107	38	13	21	26	1.90
39126--39486	195	1.8	194	87	4	537	37	12	21	29	1.90
39503--39662	72	2.2	75	85	7	213	41	13	17	26	1.87
40816--41352	183	2.9	183	94	0	941	30	21	20	27	1.98
44844--44881	19	2.0	20	89	5	60	68	0	23	7	1.16
46575--46617	18	2.5	17	85	7	61	67	2	4	25	1.22
46500--46618	58	2.1	55	81	12	134	61	2	3	32	1.26
46501--46618	60	2.0	57	81	12	134	61	2	3	33	1.26
46974--47078	37	2.8	37	86	0	138	30	13	13	42	1.82
47622--47899	60	4.6	59	75	9	188	32	14	14	38	1.86
47628--47886	120	2.2	120	80	4	281	32	13	15	38	1.87
50344--50372	3	10.0	3	92	7	51	34	0	0	65	0.93
50823--50866	2	22.5	2	90	4	72	52	2	0	45	1.13
60966--61056	23	4.0	23	81	5	103	21	23	24	30	1.99
61365--61394	2	15.0	2	92	0	51	46	0	3	50	1.18
64186--64228	20	2.2	20	95	0	77	39	16	9	34	1.80
67337--67549	110	1.9	113	80	4	252	37	15	20	27	1.92
68131--68165	17	2.1	17	100	0	70	34	0	0	65	0.93
68129--68166	20	1.9	20	100	0	76	34	0	0	65	0.93
68129--68166	3	13.0	3	94	5	69	34	0	0	65	0.93

Tables:   1

The End!