genome.fa.s5677.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005677.1 Hibiscus syriacus cultivar Beakdansim tig00013276_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  135918

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6053--6154	50	2.0	50	100	0	204	25	1	15	56	1.50
17872--17904	13	2.6	13	90	4	50	57	0	0	42	0.98
21004--21491	128	3.8	128	91	3	798	20	23	22	32	1.98
21019--21491	262	1.8	262	94	0	849	20	23	22	33	1.97
21853--21959	34	3.1	34	89	0	160	36	3	4	55	1.39
22478--22571	21	4.5	21	84	5	109	22	24	32	20	1.97
24629--24680	21	2.5	21	81	3	61	38	19	25	17	1.93
24669--24769	20	5.0	20	82	7	105	31	26	17	23	1.97
24670--24783	20	5.7	20	80	6	104	31	24	18	25	1.97
24667--24803	41	3.4	40	78	6	150	34	23	18	24	1.96
24937--24982	12	3.9	12	80	2	58	15	39	8	36	1.78
25153--25206	14	3.5	14	75	22	54	11	22	20	46	1.82
27238--27305	20	3.5	20	79	2	75	38	23	22	16	1.93
27294--27351	14	3.9	14	79	16	71	48	24	17	10	1.78
27282--27356	32	2.3	33	95	2	134	48	22	18	10	1.79
27363--27478	19	6.6	19	72	18	108	14	18	20	46	1.84
27366--27462	33	2.9	33	90	0	158	14	16	20	48	1.81
27432--27517	19	4.4	19	85	4	91	13	22	23	40	1.89
28006--28044	18	2.2	18	90	0	60	12	17	43	25	1.85
29472--29548	19	4.3	19	82	15	110	16	28	35	19	1.94
29464--29548	33	2.6	33	92	0	143	16	28	35	20	1.94
29464--29530	14	4.4	14	77	17	71	16	28	35	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30697--30731	18	1.9	18	88	0	52	54	0	17	28	1.43
33751--33809	20	3.0	20	84	0	64	44	22	16	16	1.87
34072--34115	22	2.0	22	95	0	79	18	15	45	20	1.85
34308--34375	20	3.4	20	91	0	100	25	20	27	26	1.99
34324--34440	61	1.9	61	85	0	162	23	17	23	35	1.96
34384--34437	20	2.7	20	97	0	99	25	18	24	31	1.97
34324--34458	61	2.2	61	81	2	155	22	20	23	34	1.97
38893--38928	14	2.6	14	100	0	72	5	52	27	13	1.63
52297--52462	60	2.8	60	81	7	187	35	21	3	39	1.71
52893--52925	17	1.9	17	100	0	66	42	0	3	54	1.15
60507--60599	46	2.0	46	85	0	123	34	16	11	37	1.85
60776--60831	16	3.9	13	90	9	51	48	0	0	51	1.00
60792--60833	2	21.0	2	100	0	84	50	0	0	50	1.00
61194--61343	60	2.5	60	81	2	158	44	3	17	34	1.65
70812--70842	4	7.8	4	92	0	53	25	0	25	48	1.52
74303--74542	87	2.8	87	77	1	248	39	22	12	25	1.89
74836--74889	22	2.5	22	79	8	65	44	0	1	53	1.11
79260--79926	337	2.0	327	85	5	894	35	16	12	36	1.86
80313--80339	2	13.5	2	100	0	54	48	0	51	0	1.00
84610--84660	21	2.4	21	86	0	75	25	9	1	62	1.36
85146--85176	2	15.5	2	100	0	62	51	0	0	48	1.00
85727--85757	6	5.2	6	100	0	62	35	48	16	0	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86237--86284	5	9.0	5	90	6	51	0	25	37	37	1.56
86247--86286	6	7.2	6	91	2	50	0	20	42	37	1.52
86236--86284	10	4.5	11	82	12	57	0	26	36	36	1.57
86343--86441	41	2.4	41	94	0	171	40	23	20	16	1.91
86351--86420	21	3.4	21	64	4	61	35	25	18	20	1.95
86370--86436	20	3.3	20	64	4	53	40	23	22	13	1.89
87277--87394	60	2.0	60	80	6	132	35	15	12	36	1.85
88953--89008	29	1.9	29	92	0	94	35	12	3	48	1.58
91672--91705	17	2.0	17	94	0	59	44	17	8	29	1.79
100960--100984	2	12.5	2	100	0	50	48	0	0	52	1.00
105586--105626	21	2.0	21	90	0	64	34	9	4	51	1.56
106475--106526	22	2.4	22	93	0	86	42	9	13	34	1.77
114087--114237	60	2.5	60	84	4	180	33	11	17	37	1.86
115839--115889	22	2.3	22	86	0	66	25	17	35	21	1.95
116127--116282	6	26.0	6	98	0	267	36	0	14	49	1.43
121095--121136	22	1.9	22	90	0	66	50	2	0	47	1.14
125340--125391	18	2.9	18	83	11	54	51	5	5	36	1.50
125648--125678	4	7.8	4	92	0	53	48	3	0	48	1.17
129988--130116	59	2.2	59	85	1	177	34	14	17	33	1.91
130832--130864	16	2.1	16	100	0	66	30	6	42	21	1.77

Tables:   1

The End!