Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005679.1 Hibiscus syriacus cultivar Beakdansim tig00013278_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 141915
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
File 1 of 2
Found at i:5589 original size:27 final size:25
Alignment explanation
Indices: 5547--5608 Score: 65
Period size: 27 Copynumber: 2.4 Consensus size: 25
5537 CTGAGTGTCG
**
5547 TTTA-TATT-TATTATATATAATGTA
1 TTTATTATTATATTATATACTAT-TA
5571 TTTATTATTATATTAATATACTATTA
1 TTTATTATTATATT-ATATACTATTA
5597 TATTATTATTAT
1 T-TTATTATTAT
5609 TACAAAGGCC
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
24 4 0.12
25 4 0.12
26 7 0.22
27 17 0.53
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.60
Consensus pattern (25 bp):
TTTATTATTATATTATATACTATTA
Found at i:5590 original size:8 final size:8
Alignment explanation
Indices: 5548--5610 Score: 53
Period size: 8 Copynumber: 8.0 Consensus size: 8
5538 TGAGTGTCGT
5548 TTATATTTA
1 TTATA-TTA
5557 TTATA-TA
1 TTATATTA
5564 -TA-ATGTA
1 TTATAT-TA
5571 TT-TATTA
1 TTATATTA
5578 TTATATTA
1 TTATATTA
* *
5586 ATATACTA
1 TTATATTA
5594 TTATATTA
1 TTATATTA
5602 TTATTATTA
1 TTA-TATTA
5611 CAAAGGCCCA
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
5 1 0.02
6 2 0.05
7 8 0.18
8 23 0.52
9 10 0.23
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (8 bp):
TTATATTA
Found at i:6671 original size:29 final size:31
Alignment explanation
Indices: 6626--6701 Score: 95
Period size: 29 Copynumber: 2.5 Consensus size: 31
6616 TGAATTAGAG
*
6626 ACTATAATTTTATTATTTTACAATCTAA-CC
1 ACTATAATTTTAATATTTTACAATCTAATCC
* *
6656 ACTAT-ATTTTAATATTTTATAATTTAATCC
1 ACTATAATTTTAATATTTTACAATCTAATCC
*
6686 -CTTTAATTTTAATATT
1 ACTATAATTTTAATATT
6702 AAAAATTATT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
29 22 0.55
30 18 0.45
ACGTcount: A:0.36, C:0.12, G:0.00, T:0.53
Consensus pattern (31 bp):
ACTATAATTTTAATATTTTACAATCTAATCC
Found at i:8673 original size:10 final size:10
Alignment explanation
Indices: 8660--8687 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
8650 GAGTTATACG
8660 AGAAGCTACT
1 AGAAGCTACT
8670 AGAAGCTACT
1 AGAAGCTACT
8680 AGAAGCTA
1 AGAAGCTA
8688 GAGATGTGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.43, C:0.18, G:0.21, T:0.18
Consensus pattern (10 bp):
AGAAGCTACT
Found at i:12285 original size:9 final size:9
Alignment explanation
Indices: 12271--12335 Score: 71
Period size: 9 Copynumber: 7.1 Consensus size: 9
12261 ATCATCCATC
12271 AAAGAAGAA
1 AAAGAAGAA
12280 AAAGAA-AA
1 AAAGAAGAA
12288 AAAGAA-AA
1 AAAGAAGAA
*
12296 AAAGAAAAAA
1 AAAG-AAGAA
12306 AAAGAGATGAA
1 AAAGA-A-GAA
12317 AAAGAAGAA
1 AAAGAAGAA
*
12326 AAAAAAGAA
1 AAAGAAGAA
12335 A
1 A
12336 TTAAATCAAG
Statistics
Matches: 50, Mismatches: 2, Indels: 8
0.83 0.03 0.13
Matches are distributed among these distances:
8 14 0.28
9 21 0.42
10 8 0.16
11 7 0.14
ACGTcount: A:0.82, C:0.00, G:0.17, T:0.02
Consensus pattern (9 bp):
AAAGAAGAA
Found at i:12288 original size:7 final size:8
Alignment explanation
Indices: 12271--12335 Score: 69
Period size: 8 Copynumber: 7.9 Consensus size: 8
12261 ATCATCCATC
12271 AAAGAAGAA
1 AAAGAA-AA
12280 AAAGAAAA
1 AAAGAAAA
12288 AAAGAAAA
1 AAAGAAAA
12296 AAAGAAAA
1 AAAGAAAA
*
12304 AAA-AAGA
1 AAAGAAAA
* *
12311 GATGAAAA
1 AAAGAAAA
12319 AGAAGAAAAA
1 A-AAG-AAAA
12329 AAAGAAA
1 AAAGAAA
12336 TTAAATCAAG
Statistics
Matches: 47, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
7 4 0.09
8 27 0.57
9 11 0.23
10 5 0.11
ACGTcount: A:0.82, C:0.00, G:0.17, T:0.02
Consensus pattern (8 bp):
AAAGAAAA
Found at i:12330 original size:12 final size:12
Alignment explanation
Indices: 12272--12334 Score: 56
Period size: 12 Copynumber: 5.2 Consensus size: 12
12262 TCATCCATCA
*
12272 AAGAAGAAAAAG
1 AAGAAAAAAAAG
* *
12284 AAAAAAAGAAAAA
1 AAGAAAA-AAAAG
12297 AAGAAAAAAAA-
1 AAGAAAAAAAAG
**
12308 AGAGATGAAAAAG
1 A-AGAAAAAAAAG
12321 AAGAAAAAAAAG
1 AAGAAAAAAAAG
12333 AA
1 AA
12335 ATTAAATCAA
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
11 1 0.03
12 28 0.70
13 11 0.28
ACGTcount: A:0.81, C:0.00, G:0.17, T:0.02
Consensus pattern (12 bp):
AAGAAAAAAAAG
Found at i:15389 original size:18 final size:19
Alignment explanation
Indices: 15366--15421 Score: 71
Period size: 19 Copynumber: 2.9 Consensus size: 19
15356 GAGTGTCGTT
15366 TATATTTATTATATA-TAA
1 TATATTTATTATATATTAA
15384 TATATTTATTATTATATTAA
1 TATATTTATTA-TATATTAA
*
15404 TATA-CTATTATATTATTA
1 TATATTTATTATA-TATTA
15422 TTATTACAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
18 13 0.38
19 14 0.41
20 7 0.21
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (19 bp):
TATATTTATTATATATTAA
Found at i:15399 original size:30 final size:30
Alignment explanation
Indices: 15365--15427 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
15355 CGAGTGTCGT
*
15365 TTATATTTATTATA-TATAATATAT-TTATTA
1 TTATA-TTAATATACTATAATAT-TATTATTA
*
15395 TTATATTAATATACTATTATATTATTATTA
1 TTATATTAATATACTATAATATTATTATTA
15425 TTA
1 TTA
15428 CAAAGGCCCA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 8 0.28
30 21 0.72
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.59
Consensus pattern (30 bp):
TTATATTAATATACTATAATATTATTATTA
Found at i:15407 original size:8 final size:8
Alignment explanation
Indices: 15365--15427 Score: 60
Period size: 8 Copynumber: 8.0 Consensus size: 8
15355 CGAGTGTCGT
15365 TTATATTTA
1 TTATA-TTA
15374 TTATA-TA
1 TTATATTA
*
15381 TAATA-TA
1 TTATATTA
15388 TT-TATTA
1 TTATATTA
15395 TTATATTA
1 TTATATTA
* *
15403 ATATACTA
1 TTATATTA
15411 TTATATTA
1 TTATATTA
15419 TTATTATTA
1 TTA-TATTA
15428 CAAAGGCCCA
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
6 2 0.04
7 13 0.29
8 20 0.44
9 10 0.22
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.59
Consensus pattern (8 bp):
TTATATTA
Found at i:16655 original size:29 final size:29
Alignment explanation
Indices: 16611--16685 Score: 80
Period size: 29 Copynumber: 2.5 Consensus size: 29
16601 GAATTAGAGG
*
16611 CTATAATTTTATTATTTTACAATCTAA-CC
1 CTAT-ATTTTAATATTTTACAATCTAATCC
* *
16640 ACTATATTTTAATATTTTATAATTTAATCC
1 -CTATATTTTAATATTTTACAATCTAATCC
*
16670 CTTTATTTTTAATATT
1 CTATA-TTTTAATATT
16686 AAAAATTATT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
29 23 0.59
30 16 0.41
ACGTcount: A:0.33, C:0.12, G:0.00, T:0.55
Consensus pattern (29 bp):
CTATATTTTAATATTTTACAATCTAATCC
Found at i:17527 original size:25 final size:25
Alignment explanation
Indices: 17498--17549 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
17488 GGCCAATGTA
17498 ACGAGCATTGCAAGGCTATCACTAC
1 ACGAGCATTGCAAGGCTATCACTAC
*
17523 ACGAGTATTGCAAGGCTATCACTAC
1 ACGAGCATTGCAAGGCTATCACTAC
17548 AC
1 AC
17550 AAAGTAACCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.21
Consensus pattern (25 bp):
ACGAGCATTGCAAGGCTATCACTAC
Found at i:18236 original size:22 final size:23
Alignment explanation
Indices: 18190--18234 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
18180 GTTCTATCAT
18190 ATATTCTAGTGGCATTGTGGAAA
1 ATATTCTAGTGGCATTGTGGAAA
*
18213 ATATTCTAGT-TCATT-TGGAAA
1 ATATTCTAGTGGCATTGTGGAAA
18234 A
1 A
18235 ATTTATTTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 7 0.33
22 4 0.19
23 10 0.48
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (23 bp):
ATATTCTAGTGGCATTGTGGAAA
Found at i:18565 original size:17 final size:17
Alignment explanation
Indices: 18543--18575 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
18533 AATAATAATG
18543 AGGAATTTGAAGAAAAA
1 AGGAATTTGAAGAAAAA
18560 AGGAATTTGAAGAAAA
1 AGGAATTTGAAGAAAA
18576 TAATATACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.58, C:0.00, G:0.24, T:0.18
Consensus pattern (17 bp):
AGGAATTTGAAGAAAAA
Found at i:20522 original size:6 final size:6
Alignment explanation
Indices: 20505--20554 Score: 50
Period size: 6 Copynumber: 8.0 Consensus size: 6
20495 AAATTATGAC
20505 ATTTTT AGTTTTT ATTTTT A-TTTT ATTTTT CATATTTT -TCTTTT ATTTTT
1 ATTTTT A-TTTTT ATTTTT ATTTTT ATTTTT -AT-TTTT AT-TTTT ATTTTT
20555 CTGCTATATC
Statistics
Matches: 38, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
5 5 0.13
6 20 0.53
7 9 0.24
8 4 0.11
ACGTcount: A:0.16, C:0.04, G:0.02, T:0.78
Consensus pattern (6 bp):
ATTTTT
Found at i:20542 original size:20 final size:20
Alignment explanation
Indices: 20517--20555 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
20507 TTTTAGTTTT
20517 TATTTTTATTTTATTTTTCA
1 TATTTTTATTTTATTTTTCA
*
20537 TATTTTTCTTTTATTTTTC
1 TATTTTTATTTTATTTTTC
20556 TGCTATATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.15, C:0.08, G:0.00, T:0.77
Consensus pattern (20 bp):
TATTTTTATTTTATTTTTCA
Found at i:20554 original size:11 final size:11
Alignment explanation
Indices: 20514--20556 Score: 54
Period size: 11 Copynumber: 4.1 Consensus size: 11
20504 CATTTTTAGT
*
20514 TTTTATTTTTA
1 TTTTATTTTTC
20525 TTTTATTTTTC
1 TTTTATTTTTC
*
20536 --ATATTTTTC
1 TTTTATTTTTC
20545 TTTTATTTTTC
1 TTTTATTTTTC
20556 T
1 T
20557 GCTATATCAC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
9 8 0.30
11 19 0.70
ACGTcount: A:0.14, C:0.07, G:0.00, T:0.79
Consensus pattern (11 bp):
TTTTATTTTTC
Found at i:21368 original size:19 final size:19
Alignment explanation
Indices: 21344--21383 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
21334 CTTTCGCAAA
21344 TATCAATGTTGTACACACG
1 TATCAATGTTGTACACACG
21363 TATCAATGTTGTACACACG
1 TATCAATGTTGTACACACG
21382 TA
1 TA
21384 GCATACAACC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.33
Consensus pattern (19 bp):
TATCAATGTTGTACACACG
Found at i:22473 original size:16 final size:16
Alignment explanation
Indices: 22452--22496 Score: 90
Period size: 16 Copynumber: 2.8 Consensus size: 16
22442 TTTATTTTTC
22452 ATTATTTACATTCTTT
1 ATTATTTACATTCTTT
22468 ATTATTTACATTCTTT
1 ATTATTTACATTCTTT
22484 ATTATTTACATTC
1 ATTATTTACATTC
22497 ATTTCATAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.27, C:0.13, G:0.00, T:0.60
Consensus pattern (16 bp):
ATTATTTACATTCTTT
Found at i:23134 original size:12 final size:11
Alignment explanation
Indices: 23106--23130 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
23096 GTAGATTACA
23106 AAGATATTAAC
1 AAGATATTAAC
23117 AAGATATTAAC
1 AAGATATTAAC
23128 AAG
1 AAG
23131 GATAGCCCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.08, G:0.12, T:0.24
Consensus pattern (11 bp):
AAGATATTAAC
Found at i:27585 original size:7 final size:7
Alignment explanation
Indices: 27573--27604 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
27563 AAGAGAGATA
27573 AAAATGG
1 AAAATGG
27580 AAAATGG
1 AAAATGG
27587 AAAATGG
1 AAAATGG
27594 AAAATGG
1 AAAATGG
27601 AAAA
1 AAAA
27605 ATGAAAAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.62, C:0.00, G:0.25, T:0.12
Consensus pattern (7 bp):
AAAATGG
Found at i:27610 original size:14 final size:15
Alignment explanation
Indices: 27572--27611 Score: 66
Period size: 14 Copynumber: 2.8 Consensus size: 15
27562 GAAGAGAGAT
27572 AAAAATGGAAAATGG
1 AAAAATGGAAAATGG
27587 -AAAATGGAAAATGG
1 AAAAATGGAAAATGG
27601 AAAAAT-GAAAA
1 AAAAATGGAAAA
27612 AGAAAAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 19 0.79
15 5 0.21
ACGTcount: A:0.65, C:0.00, G:0.23, T:0.12
Consensus pattern (15 bp):
AAAAATGGAAAATGG
Found at i:27616 original size:6 final size:7
Alignment explanation
Indices: 27572--27618 Score: 51
Period size: 7 Copynumber: 6.7 Consensus size: 7
27562 GAAGAGAGAT
27572 AAAAATG
1 AAAAATG
*
27579 GAAAATG
1 AAAAATG
*
27586 GAAAATG
1 AAAAATG
*
27593 GAAAATGG
1 AAAAAT-G
27601 AAAAATG
1 AAAAATG
27608 AAAAA-G
1 AAAAATG
27614 AAAAA
1 AAAAA
27619 AATAAATAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
6 6 0.16
7 25 0.68
8 6 0.16
ACGTcount: A:0.68, C:0.00, G:0.21, T:0.11
Consensus pattern (7 bp):
AAAAATG
Found at i:27618 original size:21 final size:21
Alignment explanation
Indices: 27572--27618 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
27562 GAAGAGAGAT
*
27572 AAAAATGGAAAATGGAAAATG
1 AAAAATGGAAAATGGAAAAAG
*
27593 GAAAATGGAAAAAT-GAAAAAG
1 AAAAATGG-AAAATGGAAAAAG
27614 AAAAA
1 AAAAA
27619 AATAAATAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.68, C:0.00, G:0.21, T:0.11
Consensus pattern (21 bp):
AAAAATGGAAAATGGAAAAAG
Found at i:28317 original size:6 final size:6
Alignment explanation
Indices: 28291--28325 Score: 52
Period size: 6 Copynumber: 5.5 Consensus size: 6
28281 TAAAAGAAAG
28291 AAAGAA GAAAGAA AGAAGAA AAAGAA AAAGAA AAA
1 AAAGAA -AAAGAA A-AAGAA AAAGAA AAAGAA AAA
28326 ATCAAAGTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 15 0.56
7 12 0.44
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (6 bp):
AAAGAA
Found at i:28324 original size:11 final size:11
Alignment explanation
Indices: 28284--28323 Score: 59
Period size: 11 Copynumber: 3.9 Consensus size: 11
28274 TTTGTAATAA
28284 AAGAAAGAAAG
1 AAGAAAGAAAG
28295 AAGAAAGAAAG
1 AAGAAAGAAAG
28306 AAG-AA-AAAG
1 AAGAAAGAAAG
28315 AA-AAAGAAA
1 AAGAAAGAAA
28324 AAATCAAAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
9 8 0.30
10 5 0.19
11 14 0.52
ACGTcount: A:0.78, C:0.00, G:0.23, T:0.00
Consensus pattern (11 bp):
AAGAAAGAAAG
Found at i:29103 original size:44 final size:44
Alignment explanation
Indices: 28865--29088 Score: 306
Period size: 44 Copynumber: 5.1 Consensus size: 44
28855 CGATGCATCT
* * *
28865 ATCACATAAGGAGTTGGATCAACTTCA-CGTTTCTTACTTGATTCC
1 ATCACATAAGGAGTTGGATCAACATCACCATTTC--GCTTGATTCC
* * *
28910 ATCACATAAGGAGTTGGATCAGCATCATCATTTCTCTTGATTCC
1 ATCACATAAGGAGTTGGATCAACATCACCATTTCGCTTGATTCC
* *
28954 ATCACATAAGGAGTTGGATCAATATCACCATTTCGCTTGATTTC
1 ATCACATAAGGAGTTGGATCAACATCACCATTTCGCTTGATTCC
* *
28998 ATCACATAAGGAGTTAGATCAACATCACCATTTCGCTTGATTCT
1 ATCACATAAGGAGTTGGATCAACATCACCATTTCGCTTGATTCC
* * *
29042 ATCACATAAGGAGTTGGATCAACACCACAATTTCGCTGGATTCC
1 ATCACATAAGGAGTTGGATCAACATCACCATTTCGCTTGATTCC
29086 ATC
1 ATC
29089 TTATAAAAAG
Statistics
Matches: 160, Mismatches: 18, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
44 130 0.81
45 25 0.16
46 5 0.03
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (44 bp):
ATCACATAAGGAGTTGGATCAACATCACCATTTCGCTTGATTCC
Found at i:31741 original size:20 final size:20
Alignment explanation
Indices: 31716--31756 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
31706 ATTAGGATTA
31716 ATATAAGAGCCTCCATTTTT
1 ATATAAGAGCCTCCATTTTT
31736 ATATAAGAGCCTCCATTTTT
1 ATATAAGAGCCTCCATTTTT
31756 A
1 A
31757 GGTTTAGTCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.32, C:0.20, G:0.10, T:0.39
Consensus pattern (20 bp):
ATATAAGAGCCTCCATTTTT
Found at i:35368 original size:73 final size:70
Alignment explanation
Indices: 35300--35539 Score: 252
Period size: 73 Copynumber: 3.4 Consensus size: 70
35290 GTTAAAAACG
*
35300 GCTAATAATATAAACGGTAAAAAAATAGGCGCTACCTATAACATTAAACTACCTACCGGTTTTTT
1 GCTAATAATATAAACGGTAAAAAAATAGGCGCTA-CTAT-A-ATTAAAATACCTACCGGTTTTTT
*
35365 TAAAGGTT
63 TAAAGATT
* * ** *
35373 GCTAATAATATAAACAGTAAAAGAATATACGCTATCTATTATATTAAAATACCTACCGGTTTGTT
1 GCTAATAATATAAACGGTAAAAAAATAGGCGCTA-CTA-TA-ATTAAAATACCTACCGGTTTTTT
35438 TAAAGATT
63 TAAAGATT
* * * *
35446 ACTAATAATATAAACGATAAAATAAAAAAGGCGCTAC-AT-ATTAAAATACCTACCGTTTTTTTT
1 GCTAATAATATAAACGGT-AAA-AAAATAGGCGCTACTATAATTAAAATACCTACCGGTTTTTTT
35509 AAAG-TT
64 AAAGATT
* * * *
35515 ACTAATGATGTAAAAGGTAAAAAAA
1 GCTAATAATATAAACGGTAAAAAAA
35540 ATGAGAATTA
Statistics
Matches: 142, Mismatches: 22, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
67 4 0.03
68 3 0.02
69 16 0.11
70 26 0.18
72 1 0.01
73 78 0.55
74 5 0.04
75 9 0.06
ACGTcount: A:0.45, C:0.13, G:0.12, T:0.31
Consensus pattern (70 bp):
GCTAATAATATAAACGGTAAAAAAATAGGCGCTACTATAATTAAAATACCTACCGGTTTTTTTAA
AGATT
Found at i:36759 original size:12 final size:12
Alignment explanation
Indices: 36742--36766 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
36732 GGTTGAATCG
36742 GGTCGGACACCA
1 GGTCGGACACCA
36754 GGTCGGACACCA
1 GGTCGGACACCA
36766 G
1 G
36767 AACTGTCACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.32, G:0.36, T:0.08
Consensus pattern (12 bp):
GGTCGGACACCA
Found at i:37084 original size:16 final size:15
Alignment explanation
Indices: 37060--37093 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
37050 AATGTCCCAT
37060 ATAAAATAAAACCAAA
1 ATAAAAT-AAACCAAA
*
37076 ATAATATAAACCAAA
1 ATAAAATAAACCAAA
37091 ATA
1 ATA
37094 TGACCTTCCG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.71, C:0.12, G:0.00, T:0.18
Consensus pattern (15 bp):
ATAAAATAAACCAAA
Found at i:37088 original size:15 final size:14
Alignment explanation
Indices: 37064--37093 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
37054 TCCCATATAA
37064 AATAAAACCAAAAT
1 AATAAAACCAAAAT
37078 AATATAAACCAAAAT
1 AATA-AAACCAAAAT
37093 A
1 A
37094 TGACCTTCCG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.70, C:0.13, G:0.00, T:0.17
Consensus pattern (14 bp):
AATAAAACCAAAAT
Found at i:37747 original size:29 final size:29
Alignment explanation
Indices: 37685--37812 Score: 125
Period size: 29 Copynumber: 4.2 Consensus size: 29
37675 GATGTTTTAA
* *
37685 AAAATATATAATTTTAAAAGTTAAGATAATAAT
1 AAAATATAT--TTTT-AAA-TTAAAATAAGAAT
*
37718 AAAATATATTTTTAATTTAAAATAAGAAT
1 AAAATATATTTTTAAATTAAAATAAGAAT
*
37747 AAAATATA-TTTTAAAGTAAAACTAAGAAT
1 AAAATATATTTTTAAATTAAAA-TAAGAAT
* *
37776 AAATATATATTTTTATAACT-AAATAATAAT
1 AAA-ATATATTTTTA-AATTAAAATAAGAAT
37806 AAAATAT
1 AAAATAT
37813 TGAAATATAT
Statistics
Matches: 84, Mismatches: 7, Indels: 12
0.82 0.07 0.12
Matches are distributed among these distances:
28 11 0.13
29 33 0.39
30 16 0.19
31 12 0.14
32 3 0.04
33 9 0.11
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.38
Consensus pattern (29 bp):
AAAATATATTTTTAAATTAAAATAAGAAT
Found at i:38183 original size:16 final size:16
Alignment explanation
Indices: 38162--38198 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
38152 AATTAGAGGG
* *
38162 TGATACTTGTCATCAA
1 TGATACGTGTCACCAA
38178 TGATACGTGTCACCAA
1 TGATACGTGTCACCAA
38194 TGATA
1 TGATA
38199 AATGACATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.32
Consensus pattern (16 bp):
TGATACGTGTCACCAA
Found at i:49458 original size:3 final size:3
Alignment explanation
Indices: 49450--49592 Score: 225
Period size: 3 Copynumber: 48.0 Consensus size: 3
49440 TTTATCCATT
* * *
49450 TTA TTA TTA TTA TTA TTA ATA TTA TTA TTA TCA TTA TTA ATA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
49498 TTA TTA TTA TTA TTA TTA TTA TTA TTA ATA TTA TTA TTA TCA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
49546 TTA TTA TTA TTA TTT TTA TTA TTA TTA TTA TTA TTA TT- TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
49593 AATATATTAA
Statistics
Matches: 127, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
2 2 0.02
3 125 0.98
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:58677 original size:1 final size:1
Alignment explanation
Indices: 58671--58751 Score: 63
Period size: 1 Copynumber: 81.0 Consensus size: 1
58661 ATGCTTGAAG
* * * * * ** * *
58671 AAAAAAAAAAAAAAAAAAAAAAAAAAGAAGAGAAAGAAAAGAAAAAAAAAAGGAAAAGAAGAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
58736 AGAAAAAGAAAAAAAA
1 AAAAAAAAAAAAAAAA
58752 GGGGTCAAGG
Statistics
Matches: 60, Mismatches: 20, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 60 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (1 bp):
A
Found at i:58717 original size:26 final size:26
Alignment explanation
Indices: 58668--58749 Score: 78
Period size: 29 Copynumber: 3.1 Consensus size: 26
58658 ATTATGCTTG
*
58668 AAGAAAA-AA-AAAAAAAAAAAAAAA
1 AAGAAAAGAAGAAAAAGAAAAAAAAA
* *
58692 AAAAAGAAGAGAAAGAAAAGAAAAAAAAA
1 AAGAA-AAGA-AGA-AAAAGAAAAAAAAA
*
58721 AGGAAAAGAAGAAAAAGAAAAAGAAAA
1 AAGAAAAGAAGAAAAAGAAAAA-AAAA
58748 AA
1 AA
58750 AAGGGGTCAA
Statistics
Matches: 46, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
24 4 0.09
25 2 0.04
26 11 0.24
27 8 0.17
28 5 0.11
29 16 0.35
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (26 bp):
AAGAAAAGAAGAAAAAGAAAAAAAAA
Found at i:58719 original size:31 final size:30
Alignment explanation
Indices: 58667--58751 Score: 107
Period size: 31 Copynumber: 2.7 Consensus size: 30
58657 TATTATGCTT
* *
58667 GAAGAAAAAAAAAAAAAAAAAAAAAAAAAA
1 GAAGAAAAGAAAAGAAAAAAAAAAAAAAAA
**
58697 GAAGAGAAAGAAAAGAAAAAAAAAAGGAAAA
1 GAAGA-AAAGAAAAGAAAAAAAAAAAAAAAA
58728 GAAGAAAAAGAAAAAGAAAAAAAA
1 GAAG-AAAAG-AAAAGAAAAAAAA
58752 GGGGTCAAGG
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
30 5 0.10
31 29 0.60
32 14 0.29
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (30 bp):
GAAGAAAAGAAAAGAAAAAAAAAAAAAAAA
Found at i:58752 original size:9 final size:9
Alignment explanation
Indices: 58668--58752 Score: 75
Period size: 9 Copynumber: 9.3 Consensus size: 9
58658 ATTATGCTTG
58668 AAGAAAAAA
1 AAGAAAAAA
*
58677 AAAAAAAAA
1 AAGAAAAAA
*
58686 AAAAAAAAA
1 AAGAAAAAA
* *
58695 AAGAAGAGA
1 AAGAAAAAA
*
58704 AAGAAAAGA
1 AAGAAAAAA
58713 AA-AAAAAA
1 AAGAAAAAA
*
58721 AGGAAAAGAA
1 AAGAAAA-AA
58731 GAA-AAAGAAA
1 -AAGAAA-AAA
58741 AAGAAAAAA
1 AAGAAAAAA
58750 AAG
1 AAG
58753 GGGTCAAGGT
Statistics
Matches: 63, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
8 6 0.10
9 45 0.71
10 10 0.16
11 2 0.03
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (9 bp):
AAGAAAAAA
Found at i:59982 original size:52 final size:52
Alignment explanation
Indices: 59911--60518 Score: 1031
Period size: 52 Copynumber: 11.7 Consensus size: 52
59901 TTCTCAATAA
* *
59911 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGATCAGAACATAA
1 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGATCATAACATAG
*
59963 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGATCAGAACATAG
1 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGATCATAACATAG
*
60015 CATCTTCTGAAAGTGTTCTTTGAGTTATCTGATCTGGTTGATCATAACATAG
1 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGATCATAACATAG
*
60067 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGTTTGATCATAACATAG
1 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGATCATAACATAG
*
60119 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGTTTGATCATAACATAG
1 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGATCATAACATAG
*
60171 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGTTTGATCATAACATAG
1 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGATCATAACATAG
* *
60223 CATTTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGTTTGATCATAACATAG
1 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGATCATAACATAG
*
60275 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGTTTGATCATAACATAG
1 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGATCATAACATAG
*
60327 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGA-CAGAACATAG
1 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTT-GATCATAACATAG
* *
60379 CATTTTCTGGAAGTGTTTTTTGAGTTATCTGATCTGGTTGATCATAACATAG
1 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGATCATAACATAG
*
60431 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGA-CAGAACATAG
1 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTT-GATCATAACATAG
* * *
60483 CATTTTCTGGAAGTGTTTTTTGAGATATCTGATCTG
1 CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTG
60519 ATTAGACAGA
Statistics
Matches: 535, Mismatches: 18, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
51 2 0.00
52 529 0.99
53 4 0.01
ACGTcount: A:0.23, C:0.15, G:0.21, T:0.41
Consensus pattern (52 bp):
CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGATCATAACATAG
Found at i:61496 original size:119 final size:119
Alignment explanation
Indices: 61147--61716 Score: 901
Period size: 119 Copynumber: 4.9 Consensus size: 119
61137 TAGCAAAGAT
* *
61147 TTGAATTCATCAAATTGATGGATCATTCATTTTCAGAGGAAGAGTTCATAATGAGAAGAACTCGT
1 TTGAATTCATCAAATTGATGGATCATT-GTTTCCAGAGGAAGAGTTCATAATGAGAAGAACTCGT
*
61212 CATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGC
65 CATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGC
*
61267 TTAAATTCATCAAATTGATGGATCATTGTTTCCAGA-GAAG-GTTCATAATGAGAAGAA--C-TC
1 TTGAATTCATCAAATTGATGGATCATTGTTTCCAGAGGAAGAGTTCATAATGAGAAGAACTCGTC
61327 ATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGC
66 ATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGC
61381 TTGAATTCATCAAATTGATGGATCATTGTTTCCAGAGGAAGAGTTCATAATGAGAAGAACTCGTC
1 TTGAATTCATCAAATTGATGGATCATTGTTTCCAGAGGAAGAGTTCATAATGAGAAGAACTCGTC
*
61446 ATCTGAAGAAGGAAGAAAAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGC
66 ATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGC
* *
61500 TTGAATTCATCAAATTGATGGATCATCGTTTCCAGAGGAAGAGTTCACAATGAGAAGAACTCGTC
1 TTGAATTCATCAAATTGATGGATCATTGTTTCCAGAGGAAGAGTTCATAATGAGAAGAACTCGTC
* *
61565 ATCTGAAGAAGGAAGAAGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTGC
66 ATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGC
* *** * * *
61619 TTGAATTCATC-ATTTGATGGATCAACATTACCCG-GTAA-AGTTCATAATGAGAAGAA--C-TC
1 TTGAATTCATCAAATTGATGGATCATTGTTTCCAGAGGAAGAGTTCATAATGAGAAGAACTCGTC
*
61678 ATCTGAAGAAGGAAGAAAAAGTTCATAATGAGAAGAACT
66 ATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACT
61717 CATCAAGAGC
Statistics
Matches: 424, Mismatches: 21, Indels: 17
0.92 0.05 0.04
Matches are distributed among these distances:
113 38 0.09
114 91 0.21
115 5 0.01
116 34 0.08
117 20 0.05
118 23 0.05
119 187 0.44
120 26 0.06
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.28
Consensus pattern (119 bp):
TTGAATTCATCAAATTGATGGATCATTGTTTCCAGAGGAAGAGTTCATAATGAGAAGAACTCGTC
ATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGC
Found at i:61972 original size:3 final size:3
Alignment explanation
Indices: 61964--62103 Score: 219
Period size: 3 Copynumber: 47.0 Consensus size: 3
61954 TTTATCCATT
* * *
61964 TTA TTA TTA TTA TTA TTA ATA TTA TTA TTA TCA TTA TTA ATA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
62012 TTA TTA TTA TTA TTA TTA TTA TTA ATA TTA TTA TTA TCA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
62060 TTA TTA TTA TTT TTA TTA TTA TTA TTA TTA TTA TT- TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
62104 AATATATTAA
Statistics
Matches: 124, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
2 2 0.02
3 122 0.98
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:67162 original size:5 final size:6
Alignment explanation
Indices: 67147--67180 Score: 52
Period size: 6 Copynumber: 5.7 Consensus size: 6
67137 CAACTTCATT
67147 TTTTTC TTTTTC TTTTTC TTTTCTC TTTTT- TTTT
1 TTTTTC TTTTTC TTTTTC TTTT-TC TTTTTC TTTT
67181 ACAAAGTGGG
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
5 4 0.15
6 17 0.63
7 6 0.22
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTC
Found at i:67170 original size:17 final size:17
Alignment explanation
Indices: 67148--67180 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
67138 AACTTCATTT
67148 TTTTCT-TTTTCTTTTTC
1 TTTTCTCTTTT-TTTTTC
67165 TTTTCTCTTTTTTTTT
1 TTTTCTCTTTTTTTTT
67181 ACAAAGTGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (17 bp):
TTTTCTCTTTTTTTTTC
Found at i:71370 original size:12 final size:12
Alignment explanation
Indices: 71355--71405 Score: 50
Period size: 12 Copynumber: 4.1 Consensus size: 12
71345 CCTGAAAAAG
*
71355 ACAAGGAAAATA
1 ACAAGTAAAATA
71367 ACAAGTAAATATA
1 ACAAGTAAA-ATA
*
71380 TACAA-AAAAATAA
1 -ACAAGTAAAAT-A
71393 ACAAGTAAAATA
1 ACAAGTAAAATA
71405 A
1 A
71406 AAATGCTTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
12 16 0.50
13 12 0.38
14 4 0.12
ACGTcount: A:0.69, C:0.08, G:0.08, T:0.16
Consensus pattern (12 bp):
ACAAGTAAAATA
Found at i:73046 original size:20 final size:20
Alignment explanation
Indices: 73017--73055 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
73007 ATTTCACCAC
73017 ATGCAACTATATGATCCTAA
1 ATGCAACTATATGATCCTAA
*
73037 ATGCATCTATATGATCCTA
1 ATGCAACTATATGATCCTA
73056 TATGAGCTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.36, C:0.21, G:0.10, T:0.33
Consensus pattern (20 bp):
ATGCAACTATATGATCCTAA
Found at i:73058 original size:10 final size:10
Alignment explanation
Indices: 73023--73060 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
73013 CCACATGCAA
73023 CTATATGATC
1 CTATATGATC
*
73033 CTAAATGCAT-
1 CTATATG-ATC
73043 CTATATGATC
1 CTATATGATC
73053 CTATATGA
1 CTATATGA
73061 GCTCTTAGAC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
9 2 0.08
10 20 0.83
11 2 0.08
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.37
Consensus pattern (10 bp):
CTATATGATC
Found at i:76724 original size:22 final size:22
Alignment explanation
Indices: 76696--76742 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
76686 GTATTTATTC
*
76696 AGGTTGTAACGGGGCTTAGGTT
1 AGGTTGTAACGAGGCTTAGGTT
76718 AGGTTGTAACGAGGCTTAGGTT
1 AGGTTGTAACGAGGCTTAGGTT
76740 AGG
1 AGG
76743 GTAGGGATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.21, C:0.09, G:0.40, T:0.30
Consensus pattern (22 bp):
AGGTTGTAACGAGGCTTAGGTT
Found at i:80678 original size:85 final size:85
Alignment explanation
Indices: 80535--80705 Score: 324
Period size: 85 Copynumber: 2.0 Consensus size: 85
80525 GTTATGAATG
80535 TTGTCCAAGCTTCTAGACCTTAGTGCTAAAGAGGGGCGCTTTCAATGTCACCCAAAATGCAAGAT
1 TTGTCCAAGCTTCTAGACCTTAGTGCTAAAGAGGGGCGCTTTCAATGTCACCCAAAATGCAAGAT
80600 GATTAGTCTTACCCACTTTT
66 GATTAGTCTTACCCACTTTT
* *
80620 TTGTCCAAGCTTCTGGACCTTAGTGCTAAAGAGGGGCTCTTTCAATGTCACCCAAAATGCAAGAT
1 TTGTCCAAGCTTCTAGACCTTAGTGCTAAAGAGGGGCGCTTTCAATGTCACCCAAAATGCAAGAT
80685 GATTAGTCTTACCCACTTTT
66 GATTAGTCTTACCCACTTTT
80705 T
1 T
80706 CTTCGCGGAT
Statistics
Matches: 84, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 84 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (85 bp):
TTGTCCAAGCTTCTAGACCTTAGTGCTAAAGAGGGGCGCTTTCAATGTCACCCAAAATGCAAGAT
GATTAGTCTTACCCACTTTT
Found at i:83956 original size:13 final size:13
Alignment explanation
Indices: 83938--83962 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
83928 GTGCTCCGGT
83938 GCCGGCCACCGCC
1 GCCGGCCACCGCC
83951 GCCGGCCACCGC
1 GCCGGCCACCGC
83963 TCTCGGTGGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.60, G:0.32, T:0.00
Consensus pattern (13 bp):
GCCGGCCACCGCC
Found at i:84713 original size:27 final size:25
Alignment explanation
Indices: 84673--84743 Score: 108
Period size: 27 Copynumber: 2.8 Consensus size: 25
84663 TTTGGGCTTG
84673 TAATAATTATTTAATAATAATAATATAA
1 TAATAA-TATTTAATAATAAT-A-ATAA
84701 TAATAATATTTAATAATAATAATAA
1 TAATAATATTTAATAATAATAATAA
84726 TAATAA-ATTTAATAATAA
1 TAATAATATTTAATAATAA
84744 AAAAATTTAA
Statistics
Matches: 43, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
24 12 0.28
25 10 0.23
26 1 0.02
27 14 0.33
28 6 0.14
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (25 bp):
TAATAATATTTAATAATAATAATAA
Found at i:84719 original size:24 final size:24
Alignment explanation
Indices: 84673--84743 Score: 99
Period size: 25 Copynumber: 2.9 Consensus size: 24
84663 TTTGGGCTTG
*
84673 TAATAAT-TATTTAATAATAATAATA
1 TAATAATAAATTTAATAATAAT-A-A
84698 TAATAATAATATTTAATAATAATAA
1 TAATAATAA-ATTTAATAATAATAA
84723 TAATAATAAATTTAATAATAA
1 TAATAATAAATTTAATAATAA
84744 AAAAATTTAA
Statistics
Matches: 43, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
24 12 0.28
25 17 0.40
26 1 0.02
27 13 0.30
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (24 bp):
TAATAATAAATTTAATAATAATAA
Found at i:84743 original size:3 final size:3
Alignment explanation
Indices: 84684--84731 Score: 71
Period size: 3 Copynumber: 16.0 Consensus size: 3
84674 AATAATTATT
*
84684 TAA TAA TAA TAA T-A TAA TAA TAA TATT TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA
84729 TAA
1 TAA
84732 ATTTAATAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
2 2 0.05
3 37 0.90
4 2 0.05
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:84988 original size:47 final size:47
Alignment explanation
Indices: 84937--85077 Score: 137
Period size: 47 Copynumber: 3.3 Consensus size: 47
84927 TCAAAAAGCT
84937 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGA
1 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGA
*** * *
84984 CCCGAAGGC--TTT-GAAA-A-CAT-CA---AA--AAAAAAAAACT--
1 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGA-TGA
85019 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGA
1 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGA
85066 CCCGAAGGCTTT
1 CCCGAAGGCTTT
85078 GAAAACATCA
Statistics
Matches: 70, Mismatches: 10, Indels: 28
0.65 0.09 0.26
Matches are distributed among these distances:
35 9 0.13
36 4 0.06
37 4 0.06
38 6 0.09
39 1 0.01
40 3 0.04
41 4 0.06
42 3 0.04
43 1 0.01
44 6 0.09
45 4 0.06
46 4 0.06
47 21 0.30
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21
Consensus pattern (47 bp):
CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGA
Found at i:85003 original size:76 final size:76
Alignment explanation
Indices: 84872--85878 Score: 1816
Period size: 76 Copynumber: 13.2 Consensus size: 76
84862 GATGGAAATG
*
84872 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
84937 CCCGAAGGCTT
66 CCCGAAGGCTT
*
84948 TTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAAAA
1 TTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATC------AA
*
85013 AAAACTCCCGAAGGCTT
60 AAAGCTCCCGAAGGCTT
*
85030 TTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
85095 CCCGAAGGCTT
66 CCCGAAGGCTT
*
85106 TTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
85171 CCCGAAGGCTT
66 CCCGAAGGCTT
*
85182 TTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
85247 CCCGAAGGCTT
66 CCCGAAGGCTT
*
85258 TTTGGAAACATCATGCACTAAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
85323 CCCGAAGGCTT
66 CCCGAAGGCTT
85334 TTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
*
85399 CCCGAAGGCAT
66 CCCGAAGGCTT
85410 TTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
85475 CCCGAAGGCTT
66 CCCGAAGGCTT
*
85486 TTTGGAAACATCATGCATTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
85551 CCCGAAGGCTT
66 CCCGAAGGCTT
* *
85562 TTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCATTGAAAACATTAAAAAGCT
1 TTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
*
85627 CCCGAAGCCTT
66 CCCGAAGGCTT
*
85638 TTTGGAAACATCATGCATTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
*
85703 CCCGAAGCCTT
66 CCCGAAGGCTT
85714 TTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
85779 CCCGAAGGCTT
66 CCCGAAGGCTT
*
85790 TTTGGAAACATCATGCACTGAAGGGCTTAGAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
85855 CCCGAAGGCTT
66 CCCGAAGGCTT
*
85866 TTTGAAAACATCA
1 TTTGGAAACATCA
85879 AAAGCTCCCG
Statistics
Matches: 904, Mismatches: 21, Indels: 12
0.96 0.02 0.01
Matches are distributed among these distances:
76 829 0.92
82 75 0.08
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21
Consensus pattern (76 bp):
TTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
CCCGAAGGCTT
Found at i:85365 original size:228 final size:228
Alignment explanation
Indices: 84872--88002 Score: 2588
Period size: 228 Copynumber: 14.1 Consensus size: 228
84862 GATGGAAATG
*
84872 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
84937 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
66 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
* *
85002 ATCAAAAAAAAAAAACTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGAC
131 ATC------AAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGGCTTACAGATGAC
85067 CCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
190 CCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
*
85106 TTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
85171 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
66 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
*
85236 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTAAAGGGCTTACAGATGACCCGAAG
131 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAG
85301 GCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
196 GCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
85334 TTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
* *
85399 CCCGAAGGCATTTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAAC
66 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
*
85464 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCATTGAAGGGCTTACAGATGACCCGAAG
131 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAG
85529 GCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
196 GCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
* *
85562 TTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCATTGAAAACATTAAAAAGCT
1 TTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
* * *
85627 CCCGAAGCCTTTTTGGAAACATCATGCATTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAAC
66 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
*
85692 ATCAAAAAGCTCCCGAAGCCTTTTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAG
131 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAG
85757 GCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
196 GCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
*
85790 TTTGGAAACATCATGCACTGAAGGGCTTAGAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
*
85855 CCCGAAGGCTTTTT-GAAA-A-CAT---C---A--A---A-AGCT--CCCGAAGGCTTTTTGAAA
66 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGC--TTTGAAA
85903 ACATC-AAAAGCTCCCGAAGGC-TTTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGA
129 ACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGA
85966 AGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
194 AGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
* *
86001 TTT-GAAA-A-CAT-CA---AA------A-AGCT--CCCGAAGGCTTTTGAAAACATCAAAAAGA
1 TTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGC-TTTGAAAACATCAAAAAGC
*
86050 TCCCGAAGGCTTTTTGGAAGCATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAA
65 TCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAA
* *
86115 CATC-AAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAA
130 CATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAA
86179 GGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
195 GGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
* * * * * *** * * * ** * *
86213 TTTGAAAACATCAAAAAGCTCCCGAA-GTCTTTTGGA-AACATC--ATGCACTGAAGGAC-TTAC
1 TTTGGAAACATC---ATGC-ACTGAAGGGCTTACAGATGAC-CCGAAGGCTTTGAA-AACATCA-
* * * * * * * *** **
86273 AGATG-ACCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAAGG-CTTTTTG--GAAAC-ATC
59 AAAAGCTCCCGAAGGCTTTTTGGAAACATC---ATGC-ACTGAAGGACTTACAGATGACCCGA--
* ** ** * * * * * * * *
86331 ATGCACTGAAGGGC-TTACAGATG-ACCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAA-G
118 AGGCTTTGAA-AACATCA-AAAAGCTCCCGAAGGCTTTTTGGAAACATC---ATGC-ACTGAAGG
*** * * * ** * * * * *
86391 GCTTTTGGA-AACATC--ATGCACTGAAGGAC-TTACAGATG-ACCCGAAGGC--
177 GCTTACAGATGAC-CCGAAGGCTTTGAA-AACATCA-AAAAGCTCCCGAAGGCTT
* * * * *** ** * ** * *
86439 TTTGAAAACATCAAAAGCTCCCGAA-GGCTTTTTG--GAAAC-ATCATGCACTGAAGGAC-TTAC
1 TTTGGAAACATC--ATGC-ACTGAAGGGCTTACAGATGACCCGA--AGGCTTTGAA-AACATCA-
* * * ** * * *** **
86499 AGATG-ACCCGAAGGC--TTTAAAAACATCAAAAAGCTCCTGAAGG-CTTTTTG--GAAAC-ATC
59 AAAAGCTCCCGAAGGCTTTTTGGAAACATC---ATGC-ACTGAAGGACTTACAGATGACCCGA--
* ** * * * * * * * * *
86557 ATGCACTGAAGGAC-TTACAGATG-ACCCGAAAGC--TTT-GAAACATCAAAAAGCTCCCGAA-G
118 AGGCTTTGAA-AACATCA-AAAAGCTCCCGAAGGCTTTTTGGAAACATC---ATGC-ACTGAAGG
*** ** * ** ** * * * *
86616 GCTTTTTG--GAAAC-ATCATGCACTGAAGGGC-TTATAGATG-ACCCGAAGGC--
177 GCTTACAGATGACCCGA--AGGCTTTGAA-AACATCA-AAAAGCTCCCGAAGGCTT
* * * * ** * * * ** ** *
86665 TTTGAAAACATCAAAAAGCTCCCGAA-GGCTTTTTGGAAAT-A-TC--ATGCACTGAAGGGC-TT
1 TTTGGAAACATC---ATGC-ACTGAAGGGC---TTACAGATGACCCGAAGGCTTTGAA-AACATC
* * * * * * * *** * *
86724 ACAGATG-ACCCGAAGGC--TTTGAAAACATCAAAAGCTCCCGAAGG-CGTTTTGGA-AACATC-
58 A-AAAAGCTCCCGAAGGCTTTTTGGAAACATC--ATGC-ACTGAAGGAC-TTACAGATGAC-CCG
* ** ** * * * * * * *
86783 -ATGCACTGAAGGGC-TTACAGATG-ACCCGAAGGC--TTTGAAAACATCAAAAAG-ATCCCGAA
117 AAGGCTTTGAA-AACATCA-AAAAGCTCCCGAAGGCTTTTTGGAAACATC---ATGCA--CTGAA
** * * * ** * * * * *
86842 -GGCTTTTTGGAAAT-A-TC--ATGCACTGAAGGAC-TTACAGATG-ACCCGAAGGC--
175 GGGC---TTACAGATGACCCGAAGGCTTTGAA-AACATCA-AAAAGCTCCCGAAGGCTT
*
86892 TTT-GAAA-A-CAT-CA---AA------A-AGCT--CCCGAAGGCTTTTTGAAAACATCAAAAAG
1 TTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGC--TTTGAAAACATCAAAAAG
*
86941 CTCCCGAAGTCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAA
64 CTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAA
87006 ACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGA
129 ACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGA
87071 AGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
194 AGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
87106 TTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
* *
87171 CCCGAAGGCATTTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAAC
66 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
*
87236 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCATTGAAGGGCTTACAGATGACCCGAAG
131 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAG
87301 GCTTTGAAAACATCAAAAAAGCTCCCGAAGGCTT
196 GCTTTGAAAACATC-AAAAAGCTCCCGAAGGCTT
* *
87335 TTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCATTGAAAACATTAAAAAGCT
1 TTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
* * *
87400 CCCGAAGCCTTTTTGGAAACATCATGCATTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAAC
66 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
*
87465 ATCAAAAAGCTCCCGAAGCCTTTTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAG
131 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAG
87530 GCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
196 GCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
*
87563 TTTGGAAACATCATGCACTGAAGGGCTTAGAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
*
87628 CCCGAAGGCTTTTT-GAAA-A-CAT---C--AA--A---A-AGCT--CCCGAAGGCTTTTTGAAA
66 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGC--TTTGAAA
*
87677 ACATCAAAAAGCTCCCGAAGTCTTTTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGA
129 ACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGA
87742 AGGCTTTGAAAACATC-AAAAGCTCCCGAAGGCTT
194 AGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
*
87776 TTT-GAAA-A-CAT-CA---AA------A-AGCT--CCCGAAGGCTTTTTGAAAACATCAAAAAG
1 TTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGC--TTTGAAAACATCAAAAAG
* *
87825 ATCCCGAAGGCTTTTTGGAAGCATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAA
64 CTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAA
* *
87890 ACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGA
129 ACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGA
87955 AGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
194 AGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
*
87990 TTTGAAAACATCA
1 TTTGGAAACATCA
88003 AAAAGCTCCC
Statistics
Matches: 2547, Mismatches: 200, Indels: 317
0.83 0.07 0.10
Matches are distributed among these distances:
195 9 0.00
196 33 0.01
197 15 0.01
198 2 0.00
199 39 0.02
200 4 0.00
201 1 0.00
202 4 0.00
204 2 0.00
205 2 0.00
206 2 0.00
207 8 0.00
208 8 0.00
209 8 0.00
210 28 0.01
211 154 0.06
212 145 0.06
213 147 0.06
214 127 0.05
215 18 0.01
216 4 0.00
217 5 0.00
218 3 0.00
219 2 0.00
220 3 0.00
221 3 0.00
223 4 0.00
224 3 0.00
225 56 0.02
226 228 0.09
227 142 0.06
228 910 0.36
229 255 0.10
230 35 0.01
231 7 0.00
234 131 0.05
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21
Consensus pattern (228 bp):
TTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAG
GCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
Found at i:85884 original size:30 final size:29
Alignment explanation
Indices: 85826--85937 Score: 181
Period size: 30 Copynumber: 3.8 Consensus size: 29
85816 TTAGAGATGA
85826 CCCGAAGGC-TTTGAAAACATCAAAAAGCT
1 CCCGAAGGCTTTTGAAAACATC-AAAAGCT
85855 CCCGAAGGCTTTTTGAAAACATCAAAAGCT
1 CCCGAAGGC-TTTTGAAAACATCAAAAGCT
85885 CCCGAAGGCTTTTTGAAAACATCAAAAGCT
1 CCCGAAGGC-TTTTGAAAACATCAAAAGCT
*
85915 CCCGAAGGCTTTTGGAAACATCA
1 CCCGAAGGCTTTTGAAAACATCA
85938 TGCACTGAAG
Statistics
Matches: 80, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
29 22 0.28
30 46 0.57
31 12 0.15
ACGTcount: A:0.37, C:0.24, G:0.18, T:0.21
Consensus pattern (29 bp):
CCCGAAGGCTTTTGAAAACATCAAAAGCT
Found at i:85907 original size:182 final size:182
Alignment explanation
Indices: 85674--89941 Score: 983
Period size: 182 Copynumber: 23.1 Consensus size: 182
85664 TTACAGATGA
*
85674 CCCGAAGGC-TTTGAAAACATCAAAAAGCTCCCGAAGCCTTTTTGGAAACATCATGCACTGAAGG
1 CCCGAAGGCTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGG
*
85738 GCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCA
66 ACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCA
*
85803 TGCACTGAAGGGCTTAGAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
131 TGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
* * * *
85855 CCCGAAGGCTTTTTGAAAACATC-AAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAAGCTCCCG
1 CCCGAAGGC-TTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC--ATGC-ACTG
*** * * * ** ** * * * *
85919 AAGG-CTTTTGGA-AACATC--ATGCACTGAAGGGC-TTACAGATG-ACCCGAAGGC--TTT-GA
62 AAGGACTTACAGATGAC-CCGAAGGCTTTGAA-AACATCA-AAAAGCTCCCGAAGGCTTTTTGGA
* ***
85975 AA-A-CAT-CA---AA------A-AGCT--CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
124 AACATCATGCACTGAAGGGCTTACAGATGACCCGAA--GGCTTTGAAAACATCAAAAAGCT
* *
86021 CCCGAAGGCTTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAGCATCATGCACTGAAGG
1 CCCGAAGGCTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGG
*
86086 ACTTACAGATGACCCGAAGGCTTTGAAAACATC-AAAAGATCCCGAAGGCTTTTTGGAAACATCA
66 ACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCA
*
86150 TGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
131 TGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
*
86202 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGTC-TTTTGGAAACATCATGCACTGAAG
1 CCCGAAGGC-TTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
86266 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
65 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
86331 ATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
130 ATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
* *
86384 CCCGAAGGCTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGC--TTTGAAAA
1 CCCGAAGGCTTTT-GAAA-A-CAT---C--AA--A---A-AGCT--CCCGAAGGCTTTTTGGAAA
* * * *** ** * ** * * * * *
86447 CATCAAAAGCTCCCGAAGG-CTTTTTG--GAAAC-ATCATGCACTGAAGGAC-TTACAGATG-AC
50 CATC--ATGC-ACTGAAGGACTTACAGATGACCCGA--AGGCTTTGAA-AACATCA-AAAAGCTC
** * * *** ** * **
86506 CCGAAGGC--TTTAAAAACATCAAAAAGCTCCTGAA-GGCTTTTTG--GAAAC-ATCATGCACTG
108 CCGAAGGCTTTTTGGAAACATC---ATGC-ACTGAAGGGCTTACAGATGACCCGA--AGGCTTTG
* * * * *
86565 AAGGAC-TTACAGATG-A
167 AA-AACATCA-AAAAGCT
*
86581 CCCGAAAGC-TTTG-AAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGG
1 CCCGAAGGCTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGG
* * *
86644 GCTTATAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAATATCA
66 ACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCA
86709 TGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATC-AAAAGCT
131 TGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
* * * * *** * * * **
86760 CCCGAAGGCGTTTTGGAAACATC---ATGC-ACTGAAGGGC-TTACAGATGAC-CCGAAGGCTTT
1 CCCGAAGGC-TTTTGAAAACATCAAAAAGCTCCCGAA-GGCTTTTTGGA-AACATC--ATGCACT
* * * * * * * * * **
86819 GAA-AACAT-CAAAAAGATCCCGAAGGCTTTTTGGAAATATC---ATGC-ACTGAAGGAC-TTAC
61 GAAGGACTTAC-AGATGA-CCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAAGG-CTTTTT
* * * * ** **** * * * * ***
86877 AGATGAC-CCGAAGGCTTTGAAAACATCA-AAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAAA
121 GGA-AACATC--ATGCACTGAAGGGCTTACAGATG-ACCCGAA--GGCTTTGAAAACATCAAAAA
86940 GCT
180 GCT
* * *
86943 CCCGAAGTCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGC--TTTGAAA
1 CCCGAAGGC-TTTT-GAAA-A-CAT---C--AA--A---A-AGCT--CCCGAAGGCTTTTTGGAA
* * * *** ** * ** ** * * *
87006 ACATCAAAAAGCTCCCGAAGG-CTTTTTG--GAAAC-ATCATGCACTGAAGGGC-TTACAGATG-
49 ACATC---ATGC-ACTGAAGGACTTACAGATGACCCGA--AGGCTTTGAA-AACATCA-AAAAGC
* * * * * *** ** * **
87065 ACCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAA-GGCTTTTTG--GAAAC-ATCATGCAC
106 TCCCGAAGGCTTTTTGGAAACATC---ATGC-ACTGAAGGGCTTACAGATGACCCGA--AGGCTT
** * * * *
87124 TGAAGGGC-TTACAGATG-A
165 TGAA-AACATCA-AAAAGCT
*
87142 CCCGAAGGC-TTTGAAAACATCAAAAAGCTCCCGAAGGCATTTTGGAAACATCATGCACTGAAGG
1 CCCGAAGGCTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGG
*
87206 GCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCA
66 ACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCA
*
87271 TGCATTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAAGCT
131 TGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATC-AAAAAGCT
* * * * *** * * * *
87324 CCCGAAGGCTTTTTGGAAACATC---ATGC-ACTGAAGGGC-TTACAGATGAC-CCGAAGGCATT
1 CCCGAAGGC-TTTTGAAAACATCAAAAAGCTCCCGAA-GGCTTTTTGGA-AACATC--ATGCACT
* * * * * * * * *
87383 GAA-AACATTA-AAAAGCTCCCGAAGCCTTTTTGGAAACATC---ATGCAT--TGAAGGGC-TTA
61 GAAGGAC-TTACAGATG-ACCCGAAGGC--TTTGAAAACATCAAAAAGC-TCCCGAA-GGCTTTT
** * * * ** ** * * * * ***
87440 CAGATGAC-CCGAAGGCTTTGAA-AACAT-CAAAAAGCTCCCGAAGCCTTTTTGGAAACATCATG
120 TGGA-AACATC--ATGCACTGAAGGGCTTAC-AGATG-ACCCGAA--GGCTTT-GAAA-A-CAT-
**
87502 CACTGAAGGGCTT
174 CA---AAAAGC-T
* * **
87515 ACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCA
1 CCCGA--A---G--GCTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCA
* *
87580 CTGAAGGGCTTAGAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTT-GA
59 CTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGA
* ***
87644 AA-A-CAT-CA---AA------A-AGCT--CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
124 AACATCATGCACTGAAGGGCTTACAGATGACCCGAA--GGCTTTGAAAACATCAAAAAGCT
* * * * * *** * * * **
87690 CCCGAAGTCTTTTTGGAAACATC---ATGC-ACTGAAGGGC-TTACAGATGAC-CCGAAGGCTTT
1 CCCGAAGGC-TTTTGAAAACATCAAAAAGCTCCCGAA-GGCTTTTTGGA-AACATC--ATGCACT
* * * * * *
87749 GAA-AACAT-CAAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGA
61 GAAGGACTTACAGATG-ACCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGG
* * *** ** * ** * * *
87812 AAACATCAAAAAG-ATCCCGAA-GGCTTTTTG--GAAGC-ATCATGCACTGAAGGAC-TTACAGA
123 AAACATC---ATGCA--CTGAAGGGCTTACAGATGACCCGA--AGGCTTTGAA-AACATCA-AAA
* *
87871 TG-A
179 AGCT
*
87874 CCCGAAGGC-TTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGG
1 CCCGAAGGCTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGG
*
87938 ACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCA
66 ACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC-
* * * * *** ** * ** * * * * *
88003 AAAAGCTCCCGAA-GTCTTTTTG--GAAAC-ATCATGCACTGAAGGAC-TTACAGATG-A
130 --ATGC-ACTGAAGGGCTTACAGATGACCCGA--AGGCTTTGAA-AACATCA-AAAAGCT
88057 CCCGAAGGC-TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGG
1 CCCGAAGGCTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGG
*
88121 GCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCA
66 ACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCA
*
88186 TGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
131 TGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
* *
88238 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGC--TTTGAAA
1 CCCGAAGGC-TTTT-GAAA-A-CAT---C--AA--A---A-AGCT--CCCGAAGGCTTTTTGGAA
* * *** ** * ** * * * *
88301 ACATCAAAAAGCTCCTGAAGG-CTTTTTG--GAAAC-ATCATGCACTGAAGGAC-TTACAGATG-
49 ACATC---ATGC-ACTGAAGGACTTACAGATGACCCGA--AGGCTTTGAA-AACATCA-AAAAGC
* * * * * *** * * * **
88360 ACCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAA-GGCTTTTGGA-AACATC--ATGCACT
106 TCCCGAAGGCTTTTTGGAAACATC---ATGC-ACTGAAGGGCTTACAGATGAC-CCGAAGGCTTT
** * * * *
88419 GAAGGGC-TTATAGATG-A
166 GAA-AACATCA-AAAAGCT
88436 CCCGAAGGC-TTTGAAAACATCAAAAAGCT-CCGAAGGCTTTTTGGAAACATCATGCACTGAAGG
1 CCCGAAGGCTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGG
* *
88499 GCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCGTTTTGGAAACATCA
66 ACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCA
*
88564 TGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGAT
131 TGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
* *
88616 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGC--TTTGAAA
1 CCCGAAGGC-TTTT-GAAA-A-CAT---C--AA--A---A-AGCT--CCCGAAGGCTTTTTGGAA
* * * *** ** * ** ** * * *
88679 ACATCAAAAAGCTCCCGAAGG-CTTTTTG--GAAAC-ATCATGCACTGAAGGGC-TTACAGATG-
49 ACATC---ATGC-ACTGAAGGACTTACAGATGACCCGA--AGGCTTTGAA-AACATCA-AAAAGC
* * * * * * * *** ** * *
88738 ACCCGAAGGC--ATTGAAAACATTAAAAGCTCCCGAA-GGCTTTTTG--GAAAC-ATCATGCATT
106 TCCCGAAGGCTTTTTGGAAACA-T-CATGC-ACTGAAGGGCTTACAGATGACCCGA--AGGCTTT
** * * * *
88797 GAAGGGC-TTACAGATG-A
166 GAA-AACATCA-AAAAGCT
*
88814 CCCGAAGGC-TTTGAAAACATCAAAAAGCTCCCGAAGTCTTTTTGGAAACATCATGCACTGAAGG
1 CCCGAAGGCTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGG
*
88878 GCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCA
66 ACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCA
88943 TGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
131 TGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
* * * *
88995 CCCGAAGGCTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAAGCTCCCGA
1 CCCGAAGGCTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC--ATGC-ACTGA
* *** * * * ** * * * * * *
89060 A-GTCTTTTGGA-AACATC--ATGCACTGAAGGAC-TTACAGATG-ACCCGAAGGC--TTTGAAA
63 AGGACTTACAGATGAC-CCGAAGGCTTTGAA-AACATCA-AAAAGCTCCCGAAGGCTTTTTGGAA
* * * *** ** * ** ** * * *
89117 ACATCAAAAAGCTCCCGAA-GGCTTTTTG--GAAAC-ATCATGCACTGAAGGGC-TTACAGATG-
125 ACATC---ATGC-ACTGAAGGGCTTACAGATGACCCGA--AGGCTTTGAA-AACATCA-AAAAGC
*
89176 A
182 T
89177 CCCGAAGGC-TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGG
1 CCCGAAGGCTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGG
89241 ACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGC-TTTTGGAAACATCA
66 ACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCA
* *
89305 TGCACTGAAGGACTTACAGATGACCCGAAGGCTTTAAAAACATCAAAAAGCT
131 TGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
* * * *
89357 CCTGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAAGC--TTTGAAA
1 CCCGAAGGC-TTTT-GAAA-A-CAT---C--AA--A---A-AGCT--CCCGAAGGCTTTTTGGAA
* * * *** ** * ** ** * * *
89420 ACATCAAAAAGCTCCCGAAGG-CTTTTTG--GAAAC-ATCATGCACTGAAGGGC-TTATAGATG-
49 ACATC---ATGC-ACTGAAGGACTTACAGATGACCCGA--AGGCTTTGAA-AACATCA-AAAAGC
* * * * * ** * * * *
89479 ACCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAA-GGCTTTTTGGAAAT-A-TC--ATGCA
106 TCCCGAAGGCTTTTTGGAAACATC---ATGC-ACTGAAGGGC---TTACAGATGACCCGAAGGCT
* ** * * * *
89537 CTGAAGGGC-TTACAGATG-A
164 TTGAA-AACATCA-AAAAGCT
*
89556 CCCGAAGGC-TTTGAAAACATCAAAAAGCTCCCGAAGGCGTTTTGGAAACATCATGCACTGAAGG
1 CCCGAAGGCTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGG
* * *
89620 GCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAATATCA
66 ACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCA
*
89685 TGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
131 TGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
*
89737 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGTCTTTTTGGAAACATCATGCACTGAAG
1 CCCGAAGGC-TTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
89802 GACTTACAGATGACCCGAAGGCTTTGAAAACATC-AAAAGCTCCCGAAGGCTTTTTGGAAACATC
65 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
89866 ATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATC-AAAAGCT
130 ATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
*
89918 CCCGAAGGCTTTTTGGAAACATCA
1 CCCGAAGGC-TTTTGAAAACATCA
89942 TGCACTGAAG
Statistics
Matches: 2909, Mismatches: 738, Indels: 880
0.64 0.16 0.19
Matches are distributed among these distances:
163 6 0.00
164 18 0.01
165 37 0.01
166 86 0.03
167 11 0.00
168 38 0.01
169 15 0.01
170 5 0.00
171 3 0.00
173 3 0.00
174 4 0.00
175 4 0.00
176 6 0.00
177 19 0.01
178 73 0.03
179 164 0.06
180 231 0.08
181 394 0.14
182 476 0.16
183 447 0.15
184 84 0.03
185 49 0.02
186 24 0.01
187 9 0.00
188 7 0.00
189 9 0.00
190 10 0.00
191 9 0.00
192 7 0.00
193 9 0.00
194 11 0.00
195 29 0.01
196 56 0.02
197 134 0.05
198 98 0.03
199 152 0.05
200 83 0.03
201 49 0.02
202 14 0.00
203 26 0.01
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.21
Consensus pattern (182 bp):
CCCGAAGGCTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGG
ACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCA
TGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
Found at i:85965 original size:106 final size:105
Alignment explanation
Indices: 85674--86331 Score: 643
Period size: 106 Copynumber: 6.2 Consensus size: 105
85664 TTACAGATGA
*
85674 CCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAAGCCTTTTTGGAAACATCATGCACTGAAG
1 CCCGAAGGCTTTTTGAAAACATC-AAAAGCTCCCGAAGGC-TTTTGGAAACATCATGCACTGAAG
*
85737 GGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
64 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
* * * * * * * * **
85779 CCCGAAGGCTTTTTGGAAACATC--ATGC-ACTGAAGGGC-TTAGAGATGAC-CCGAAGGCTTTG
1 CCCGAAGGCTTTTTGAAAACATCAAAAGCTCCCGAA-GGCTTTTG-GA-AACATC--ATGCACTG
* * * * *
85839 AA-AACAT-CAAAAAGCTCCCGAAGGCTTTTTGAAAACATC-AAAAGCT
61 AAGGACTTAC-AGATG-ACCCGAAGGC--TTTGAAAACATCAAAAAGCT
*
85885 CCCGAAGGCTTTTTGAAAACATCAAAAGCTCCCGAAGGCTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTTTGAAAACATCAAAAGCTCCCGAAGGCTTTTGGAAACATCATGCACTGAAGGA
85950 CTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
66 CTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
* * *
85990 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTGAAAACATCAAAAAG-ATCCC
1 CCCGAAGGCTTTTTGAAAACATC-AAAAGCTCCCGAAGGCTTTTGGAAACATC---ATGCA--CT
*** ** * ** * * * * *
86054 GAAGG-CTTTTTG--GAAGC-ATCATGCACTGAAGGAC-TTACAGATG-A
60 GAAGGACTTACAGATGACCCGA--AGGCTTTGAA-AACATCA-AAAAGCT
*
86098 CCCGAAGGC--TTTGAAAACATCAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGG
1 CCCGAAGGCTTTTTGAAAACATCAAAAGCTCCCGAAGGC-TTTTGGAAACATCATGCACTGAAGG
86161 ACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
65 ACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
*
86202 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGTCTTTTGGAAACATCATGCACTGAAGG
1 CCCGAAGGCTTTTTGAAAACATC-AAAAGCTCCCGAAGGCTTTTGGAAACATCATGCACTGAAGG
86267 ACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
65 ACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
*
86308 CCCGAAGGCTTTTTGGAAACATCA
1 CCCGAAGGCTTTTTGAAAACATCA
86332 TGCACTGAAG
Statistics
Matches: 444, Mismatches: 69, Indels: 80
0.75 0.12 0.13
Matches are distributed among these distances:
102 9 0.02
103 19 0.04
104 43 0.10
105 74 0.17
106 199 0.45
107 47 0.11
108 29 0.07
109 18 0.04
110 6 0.01
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.21
Consensus pattern (105 bp):
CCCGAAGGCTTTTTGAAAACATCAAAAGCTCCCGAAGGCTTTTGGAAACATCATGCACTGAAGGA
CTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
Found at i:85992 original size:135 final size:136
Alignment explanation
Indices: 85750--86149 Score: 700
Period size: 135 Copynumber: 3.0 Consensus size: 136
85740 TTACAGATGA
85750 CCCGAAGGC-TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGG
1 CCCGAAGGCTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGG
*
85814 GCTTAGAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCA
66 GCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCA
85879 AAAGCT
131 AAAGCT
85885 CCCGAAGGCTTTTTGAAAACATC-AAAAGCTCCCGAAGGC-TTTTGGAAACATCATGCACTGAAG
1 CCCGAAGGC-TTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
85948 GGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATC
65 GGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATC
86013 AAAAAGCT
130 -AAAAGCT
* *
86021 CCCGAAGGCTTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAGCATCATGCACTGAAGG
1 CCCGAAGGCTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGG
* * *
86086 ACTTACAGATGACCCGAAGGCTTTGAAAACATC-AAAAGATCCCGAAGGCTTTTTGGAAACATCA
66 GCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCA
86150 TGCACTGAAG
Statistics
Matches: 254, Mismatches: 6, Indels: 10
0.94 0.02 0.04
Matches are distributed among these distances:
135 111 0.44
136 75 0.30
137 68 0.27
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.21
Consensus pattern (136 bp):
CCCGAAGGCTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGG
GCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCA
AAAGCT
Found at i:86055 original size:61 final size:60
Alignment explanation
Indices: 85961--86074 Score: 192
Period size: 61 Copynumber: 1.9 Consensus size: 60
85951 TTACAGATGA
*
85961 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAAAGCT
1 CCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGAAAACATCAAAAAGCT
* *
86021 CCCGAAGGCTTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAGCATCA
1 CCCGAAGGC-TTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGAAAACATCA
86075 TGCACTGAAG
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
60 9 0.18
61 41 0.82
ACGTcount: A:0.38, C:0.23, G:0.18, T:0.21
Consensus pattern (60 bp):
CCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGAAAACATCAAAAAGCT
Found at i:86074 original size:31 final size:30
Alignment explanation
Indices: 85961--86063 Score: 181
Period size: 30 Copynumber: 3.4 Consensus size: 30
85951 TTACAGATGA
85961 CCCGAAGGC-TTTGAAAACATCAAAAAGCT
1 CCCGAAGGCTTTTGAAAACATCAAAAAGCT
85990 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
1 CCCGAAGGC-TTTTGAAAACATCAAAAAGCT
*
86021 CCCGAAGGCTTTTGAAAACATCAAAAAGAT
1 CCCGAAGGCTTTTGAAAACATCAAAAAGCT
86051 CCCGAAGGCTTTT
1 CCCGAAGGCTTTT
86064 TGGAAGCATC
Statistics
Matches: 71, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
29 9 0.13
30 33 0.46
31 29 0.41
ACGTcount: A:0.38, C:0.23, G:0.17, T:0.21
Consensus pattern (30 bp):
CCCGAAGGCTTTTGAAAACATCAAAAAGCT
Found at i:86149 original size:75 final size:76
Alignment explanation
Indices: 86021--86225 Score: 367
Period size: 75 Copynumber: 2.7 Consensus size: 76
86011 TCAAAAAGCT
*
86021 CCCGAAGGCTTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAGCATCATGCACTGAAGG
1 CCCGAAGGC-TTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGG
86086 ACTTACAGATGA
65 ACTTACAGATGA
86098 CCCGAAGGCTTTGAAAACATC-AAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
1 CCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
86162 CTTACAGATGA
66 CTTACAGATGA
* *
86173 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCA
1 CCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCA
86226 AAAAGCTCCC
Statistics
Matches: 124, Mismatches: 3, Indels: 3
0.95 0.02 0.02
Matches are distributed among these distances:
75 74 0.60
76 41 0.33
77 9 0.07
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.21
Consensus pattern (76 bp):
CCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
CTTACAGATGA
Found at i:86252 original size:30 final size:30
Alignment explanation
Indices: 86173--86255 Score: 132
Period size: 31 Copynumber: 2.8 Consensus size: 30
86163 TTACAGATGA
86173 CCCGAAGGC-TTTGAAAACATCAAAAAGCT
1 CCCGAAGGCTTTTGAAAACATCAAAAAGCT
86202 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
1 CCCGAAGGC-TTTTGAAAACATCAAAAAGCT
* *
86233 CCCGAAGTCTTTTGGAAACATCA
1 CCCGAAGGCTTTTGAAAACATCA
86256 TGCACTGAAG
Statistics
Matches: 50, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
29 9 0.18
30 13 0.26
31 28 0.56
ACGTcount: A:0.37, C:0.24, G:0.17, T:0.22
Consensus pattern (30 bp):
CCCGAAGGCTTTTGAAAACATCAAAAAGCT
Found at i:86350 original size:76 final size:76
Alignment explanation
Indices: 86202--86935 Score: 1289
Period size: 76 Copynumber: 9.7 Consensus size: 76
86192 TCAAAAAGCT
*
86202 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGTC-TTTTGGAAACATCATGCACTGAAG
1 CCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
86266 GACTTACAGATGA
64 GACTTACAGATGA
*
86279 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
86344 CTTACAGATGA
66 CTTACAGATGA
86355 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGC-TTTTGGAAACATCATGCACTGAAGGA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
86419 CTTACAGATGA
66 CTTACAGATGA
86430 CCCGAAGGCTTTGAAAACATC-AAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
86494 CTTACAGATGA
66 CTTACAGATGA
* *
86505 CCCGAAGGCTTTAAAAACATCAAAAAGCTCCTGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
86570 CTTACAGATGA
66 CTTACAGATGA
* *
86581 CCCGAAAGCTTTG-AAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
*
86645 CTTATAGATGA
66 CTTACAGATGA
* *
86656 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAATATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
86721 CTTACAGATGA
66 CTTACAGATGA
* *
86732 CCCGAAGGCTTTGAAAACATC-AAAAGCTCCCGAAGGCGTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
86796 CTTACAGATGA
66 CTTACAGATGA
* *
86807 CCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAATATCATGCACTGAAGGA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
86872 CTTACAGATGA
66 CTTACAGATGA
*
86883 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCA
86936 AAAAGCTCCC
Statistics
Matches: 630, Mismatches: 22, Indels: 11
0.95 0.03 0.02
Matches are distributed among these distances:
74 16 0.03
75 286 0.45
76 319 0.51
77 9 0.01
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.22
Consensus pattern (76 bp):
CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
CTTACAGATGA
Found at i:86402 original size:151 final size:152
Alignment explanation
Indices: 86202--86935 Score: 1307
Period size: 151 Copynumber: 4.8 Consensus size: 152
86192 TCAAAAAGCT
*
86202 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGTC-TTTTGGAAACATCATGCACTGAAG
1 CCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
86266 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
64 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
86331 ATGCACTGAAGGGCTTACAGATGA
129 ATGCACTGAAGGGCTTACAGATGA
86355 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGC-TTTTGGAAACATCATGCACTGAAGGA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
86419 CTTACAGATGACCCGAAGGCTTTGAAAACATC-AAAAGCTCCCGAAGGCTTTTTGGAAACATCAT
66 CTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCAT
*
86483 GCACTGAAGGACTTACAGATGA
131 GCACTGAAGGGCTTACAGATGA
* *
86505 CCCGAAGGCTTTAAAAACATCAAAAAGCTCCTGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
*
86570 CTTACAGATGACCCGAAAGCTTTG-AAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCAT
66 CTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCAT
*
86634 GCACTGAAGGGCTTATAGATGA
131 GCACTGAAGGGCTTACAGATGA
* *
86656 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAATATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
*
86721 CTTACAGATGACCCGAAGGCTTTGAAAACATC-AAAAGCTCCCGAAGGCGTTTTGGAAACATCAT
66 CTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCAT
86785 GCACTGAAGGGCTTACAGATGA
131 GCACTGAAGGGCTTACAGATGA
* *
86807 CCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAATATCATGCACTGAAGGA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
*
86872 CTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCA
66 CTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCA
86936 AAAAGCTCCC
Statistics
Matches: 559, Mismatches: 18, Indels: 9
0.95 0.03 0.02
Matches are distributed among these distances:
150 96 0.17
151 418 0.75
152 36 0.06
153 9 0.02
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.22
Consensus pattern (152 bp):
CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
CTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCAT
GCACTGAAGGGCTTACAGATGA
Found at i:86930 original size:31 final size:31
Alignment explanation
Indices: 86883--86966 Score: 136
Period size: 31 Copynumber: 2.8 Consensus size: 31
86873 TTACAGATGA
86883 CCCGAAGGC--TTTGAAAACATCAAAAAGCT
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
86912 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
* *
86943 CCCGAAGTCTTTTTGGAAACATCA
1 CCCGAAGGCTTTTTGAAAACATCA
86967 TGCACTGAAG
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
29 9 0.18
31 42 0.82
ACGTcount: A:0.37, C:0.24, G:0.17, T:0.23
Consensus pattern (31 bp):
CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
Found at i:86935 original size:107 final size:107
Alignment explanation
Indices: 86807--87042 Score: 422
Period size: 107 Copynumber: 2.2 Consensus size: 107
86797 TTACAGATGA
*
86807 CCCGAAGGC--TTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAATATCATGCACTGAAG
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
86870 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
66 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
* *
86912 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGTCTTTTTGGAAACATCATGCACTGAAG
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
86977 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
66 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
*
87019 CCCGAAGGCTTTTTGGAAACATCA
1 CCCGAAGGCTTTTTGAAAACATCA
87043 TGCACTGAAG
Statistics
Matches: 125, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
105 9 0.07
107 116 0.93
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.22
Consensus pattern (107 bp):
CCCGAAGGCTTTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
Found at i:86965 original size:183 final size:183
Alignment explanation
Indices: 86732--87118 Score: 690
Period size: 183 Copynumber: 2.1 Consensus size: 183
86722 TTACAGATGA
86732 CCCGAAGGC--TTTGAAAACATC-AAAAGCTCCCGAAGGCGTTTTGGAAACATCATGCACTGAAG
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCGTTTTGGAAACATCATGCACTGAAG
* *
86794 GGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAATATC
66 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATC
86859 ATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
131 ATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
* *
86912 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGTCTTTTTGGAAACATCATGCACTGAAG
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCGTTTTGGAAACATCATGCACTGAAG
*
86977 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
66 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATC
*
87042 ATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
131 ATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
*
87095 CCCGAAGGCTTTTTGGAAACATCA
1 CCCGAAGGCTTTTTGAAAACATCA
87119 TGCACTGAAG
Statistics
Matches: 197, Mismatches: 7, Indels: 3
0.95 0.03 0.01
Matches are distributed among these distances:
180 9 0.05
182 12 0.06
183 176 0.89
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.21
Consensus pattern (183 bp):
CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCGTTTTGGAAACATCATGCACTGAAG
GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATC
ATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
Found at i:87040 original size:76 final size:76
Alignment explanation
Indices: 86912--87651 Score: 1354
Period size: 76 Copynumber: 9.7 Consensus size: 76
86902 TCAAAAAGCT
*
86912 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGTCTTTTTGGAAACATCATGCACTGAAG
1 CCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
*
86977 GACTTACAGATGA
64 GGCTTACAGATGA
86990 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
87055 CTTACAGATGA
66 CTTACAGATGA
87066 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
87131 CTTACAGATGA
66 CTTACAGATGA
*
87142 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCATTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
87207 CTTACAGATGA
66 CTTACAGATGA
*
87218 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCATTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
87283 CTTACAGATGA
66 CTTACAGATGA
87294 CCCGAAGGCTTTGAAAACATCAAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGG
1 CCCGAAGGCTTTGAAAACATC-AAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGG
87359 GCTTACAGATGA
65 GCTTACAGATGA
* * * *
87371 CCCGAAGGCATTGAAAACATTAAAAAGCTCCCGAAGCCTTTTTGGAAACATCATGCATTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
87436 CTTACAGATGA
66 CTTACAGATGA
*
87447 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGCCTTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
87512 CTTACAGATGA
66 CTTACAGATGA
87523 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
*
87588 CTTAGAGATGA
66 CTTACAGATGA
*
87599 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCA
87652 AAAAGCTCCC
Statistics
Matches: 645, Mismatches: 16, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
76 563 0.87
77 73 0.11
78 9 0.01
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.21
Consensus pattern (76 bp):
CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
CTTACAGATGA
Found at i:87646 original size:31 final size:31
Alignment explanation
Indices: 87599--87713 Score: 198
Period size: 31 Copynumber: 3.8 Consensus size: 31
87589 TTAGAGATGA
87599 CCCGAAGGC--TTTGAAAACATCAAAAAGCT
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
87628 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
87659 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
* *
87690 CCCGAAGTCTTTTTGGAAACATCA
1 CCCGAAGGCTTTTTGAAAACATCA
87714 TGCACTGAAG
Statistics
Matches: 82, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
29 9 0.11
31 73 0.89
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.23
Consensus pattern (31 bp):
CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
Found at i:87694 original size:62 final size:60
Alignment explanation
Indices: 87599--87838 Score: 235
Period size: 62 Copynumber: 4.2 Consensus size: 60
87589 TTAGAGATGA
87599 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAAAGCT
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAAAGCT
* * *
87659 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGTCTTTTTGGAAACATC---ATGC-
1 CCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAAAGCT
* * * * *
87717 ACTGAAGGGC-TT------A-C-AGATG-ACCCGAAGGC--TTTGAAAACATC-AAAAGCT
1 CCCGAA-GGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAAAGCT
*
87765 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAAAGAT
1 CCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAAAGCT
87827 CCCGAAGGCTTT
1 CCCGAAGGCTTT
87839 TTGGAAGCAT
Statistics
Matches: 142, Mismatches: 17, Indels: 42
0.71 0.08 0.21
Matches are distributed among these distances:
45 11 0.08
47 14 0.10
48 7 0.05
49 1 0.01
50 3 0.02
56 3 0.02
57 1 0.01
58 7 0.05
59 15 0.11
60 12 0.08
61 12 0.08
62 56 0.39
ACGTcount: A:0.37, C:0.23, G:0.18, T:0.22
Consensus pattern (60 bp):
CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAAAGCT
Found at i:87796 original size:31 final size:31
Alignment explanation
Indices: 87737--87850 Score: 180
Period size: 31 Copynumber: 3.8 Consensus size: 31
87727 TTACAGATGA
87737 CCCGAAGGC--TTTGAAAACATC-AAAAGCT
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
87765 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
*
87796 CCCGAAGGCTTTTTGAAAACATCAAAAAGAT
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
* *
87827 CCCGAAGGCTTTTTGGAAGCATCA
1 CCCGAAGGCTTTTTGAAAACATCA
87851 TGCACTGAAG
Statistics
Matches: 80, Mismatches: 3, Indels: 3
0.93 0.03 0.03
Matches are distributed among these distances:
28 9 0.11
30 12 0.15
31 59 0.74
ACGTcount: A:0.37, C:0.23, G:0.18, T:0.22
Consensus pattern (31 bp):
CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
Found at i:87839 original size:137 final size:138
Alignment explanation
Indices: 87523--87926 Score: 724
Period size: 137 Copynumber: 2.9 Consensus size: 138
87513 TTACAGATGA
87523 CCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
*
87586 GGCTTAGAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATC
66 GGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATC
87651 AAAAAGCT
131 AAAAAGCT
*
87659 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGTCTTTTTGGAAACATCATGCACTGAAG
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
87724 GGCTTACAGATGACCCGAAGGCTTTGAAAACATC-AAAAGCTCCCGAAGGCTTTTTGAAAACATC
66 GGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATC
87788 AAAAAGCT
131 AAAAAGCT
* *
87796 CCCGAAGGCTTTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAGCATCATGCACTGAAG
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
* * *
87861 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATC
66 GGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATC
87926 A
131 A
87927 TGCACTGAAG
Statistics
Matches: 257, Mismatches: 8, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
136 9 0.04
137 133 0.52
138 115 0.45
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (138 bp):
CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
GGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATC
AAAAAGCT
Found at i:87926 original size:76 final size:76
Alignment explanation
Indices: 87796--88002 Score: 369
Period size: 76 Copynumber: 2.7 Consensus size: 76
87786 TCAAAAAGCT
*
87796 CCCGAAGGCTTTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAGCATCATGCACTGAAG
1 CCCGAAGGC--TTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
87861 GACTTACAGATGA
64 GACTTACAGATGA
87874 CCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
1 CCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
87939 CTTACAGATGA
66 CTTACAGATGA
* *
87950 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCA
1 CCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCA
88003 AAAAGCTCCC
Statistics
Matches: 126, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
76 117 0.93
78 9 0.07
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (76 bp):
CCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
CTTACAGATGA
Found at i:87994 original size:107 final size:107
Alignment explanation
Indices: 87447--88109 Score: 675
Period size: 107 Copynumber: 6.2 Consensus size: 107
87437 TTACAGATGA
*
87447 CCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAAGCCTTTTTGGAAACATCATGCACTGAAG
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
*
87510 GGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
66 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
* * * * * * * * **
87552 CCCGAAGGCTTTTTGGAAACATC---ATGC-ACTGAAGGGC--TTAGAGATGAC-CCGAAGGCTT
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAA-GGCTTTTTG-GA-AACATC--ATGCAC
* * * * *
87610 TGAA-AACAT-CAAAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAAAGCT
61 TGAAGGACTTAC-AGATG-ACCCGAAGGC--TTTGAAAACATCAAAAAGCT
*
87659 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGTCTTTTTGGAAACATCATGCACTGAAG
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
*
87724 GGCTTACAGATGACCCGAAGGCTTTGAAAACATC-AAAAGCT
66 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
* *
87765 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAAAG-ATCC
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC---ATGCA--C
* *** ** * ** * * * * *
87829 CGAAGG-CTTTTTG--GAAGC-ATCATGCACTGAAGGAC-TTACAGATG-A
61 TGAAGGACTTACAGATGACCCGA--AGGCTTTGAA-AACATCA-AAAAGCT
*
87874 CCCGAAGGC--TTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
87937 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
66 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
*
87979 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGTCTTTTTGGAAACATCATGCACTGAAG
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
88044 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
66 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
*
88086 CCCGAAGGCTTTTTGGAAACATCA
1 CCCGAAGGCTTTTTGAAAACATCA
88110 TGCACTGAAG
Statistics
Matches: 448, Mismatches: 71, Indels: 76
0.75 0.12 0.13
Matches are distributed among these distances:
102 3 0.01
103 14 0.03
104 23 0.05
105 44 0.10
106 63 0.14
107 227 0.51
108 9 0.02
109 33 0.07
110 21 0.05
111 8 0.02
112 3 0.01
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (107 bp):
CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
Found at i:87997 original size:31 final size:31
Alignment explanation
Indices: 87950--88033 Score: 136
Period size: 31 Copynumber: 2.8 Consensus size: 31
87940 TTACAGATGA
87950 CCCGAAGGC--TTTGAAAACATCAAAAAGCT
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
87979 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
* *
88010 CCCGAAGTCTTTTTGGAAACATCA
1 CCCGAAGGCTTTTTGAAAACATCA
88034 TGCACTGAAG
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
29 9 0.18
31 42 0.82
ACGTcount: A:0.37, C:0.24, G:0.17, T:0.23
Consensus pattern (31 bp):
CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
Found at i:88072 original size:76 final size:76
Alignment explanation
Indices: 87979--89017 Score: 1897
Period size: 76 Copynumber: 13.7 Consensus size: 76
87969 TCAAAAAGCT
*
87979 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGTCTTTTTGGAAACATCATGCACTGAAG
1 CCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
*
88044 GACTTACAGATGA
64 GGCTTACAGATGA
88057 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
88122 CTTACAGATGA
66 CTTACAGATGA
*
88133 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
88198 CTTACAGATGA
66 CTTACAGATGA
*
88209 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
88274 CTTACAGATGA
66 CTTACAGATGA
* *
88285 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCTGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
88350 CTTACAGATGA
66 CTTACAGATGA
88361 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGC-TTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
*
88425 CTTATAGATGA
66 CTTACAGATGA
88436 CCCGAAGGCTTTGAAAACATCAAAAAGCT-CCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
88500 CTTACAGATGA
66 CTTACAGATGA
*
88511 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCGTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
88576 CTTACAGATGA
66 CTTACAGATGA
* *
88587 CCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
88652 CTTACAGATGA
66 CTTACAGATGA
88663 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
88728 CTTACAGATGA
66 CTTACAGATGA
* * *
88739 CCCGAAGGCATTGAAAACAT-TAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCATTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
88803 CTTACAGATGA
66 CTTACAGATGA
*
88814 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGTCTTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
88879 CTTACAGATGA
66 CTTACAGATGA
88890 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
88955 CTTACAGATGA
66 CTTACAGATGA
*
88966 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGC-TTTTGAAAACATCA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCA
89018 AAAAGCTCCC
Statistics
Matches: 935, Mismatches: 23, Indels: 9
0.97 0.02 0.01
Matches are distributed among these distances:
74 8 0.01
75 214 0.23
76 704 0.75
78 9 0.01
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.21
Consensus pattern (76 bp):
CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
CTTACAGATGA
Found at i:88252 original size:228 final size:228
Alignment explanation
Indices: 87979--92196 Score: 3618
Period size: 228 Copynumber: 18.9 Consensus size: 228
87969 TCAAAAAGCT
*
87979 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGTCTTTTTGGAAACATCATGCACTGAAG
1 CCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
*
88044 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
64 GGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
88109 ATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTT
129 ATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTT
88174 TTGGAAACATCATGCACTGAAGGACTTACAGATGA
194 TTGGAAACATCATGCACTGAAGGACTTACAGATGA
*
88209 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
*
88274 CTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCTGAAGGCTTTTTGGAAACATCAT
66 CTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCAT
*
88339 GCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGC-TTTT
131 GCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTT
* *
88403 GGAAACATCATGCACTGAAGGGCTTATAGATGA
196 GGAAACATCATGCACTGAAGGACTTACAGATGA
88436 CCCGAAGGCTTTGAAAACATCAAAAAGCT-CCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
*
88500 CTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCGTTTTGGAAACATCAT
66 CTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCAT
*
88565 GCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTT
131 GCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTT
88630 GGAAACATCATGCACTGAAGGACTTACAGATGA
196 GGAAACATCATGCACTGAAGGACTTACAGATGA
88663 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
* *
88728 CTTACAGATGACCCGAAGGCATTGAAAACAT-TAAAAGCTCCCGAAGGCTTTTTGGAAACATCAT
66 CTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCAT
* *
88792 GCATTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGTCTTTTT
131 GCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTT
*
88857 GGAAACATCATGCACTGAAGGGCTTACAGATGA
196 GGAAACATCATGCACTGAAGGACTTACAGATGA
88890 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
88955 CTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGC-TTTT-GAAA-A-CAT
66 CTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCAT
* *
89016 -CA---AA------A-AGCT--CCCGAAGGCTTTTTGAAAACATC-AAAAGCTCCCGAAGTC-TT
131 GCACTGAAGGGCTTACAGATGACCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAAGGCTTT
89066 TTGGAAACATCATGCACTGAAGGACTTACAGATGA
194 TTGGAAACATCATGCACTGAAGGACTTACAGATGA
89101 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
89166 CTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCAT
66 CTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCAT
*
89231 GCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGC-TTTT
131 GCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTT
89295 GGAAACATCATGCACTGAAGGACTTACAGATGA
196 GGAAACATCATGCACTGAAGGACTTACAGATGA
* * *
89328 CCCGAAGGCTTTAAAAACATCAAAAAGCTCCTGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
*
89393 CTTACAGATGACCCGAAAGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCAT
66 CTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCAT
*
89458 GCACTGAAGGGCTTATAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTT
131 GCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTT
* *
89523 GGAAATATCATGCACTGAAGGGCTTACAGATGA
196 GGAAACATCATGCACTGAAGGACTTACAGATGA
*
89556 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCGTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
* *
89621 CTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAATATCAT
66 CTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCAT
*
89686 GCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTT
131 GCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTT
* * * * * ***
89751 GAAAACATCAAAAAGCTCCCGAA-GTCTTTTTG--GA
196 GGAAACATC---ATGC-ACTGAAGGACTTACAGATGA
** * ** * * * * * * * *
89785 AAC-ATCATGCACTGAAGGAC-TTACAGATG-ACCCGAAGGC--TTTGAAAACATCAAAAGCTCC
1 CCCGA--AGGCTTTGAA-AACATCA-AAAAGCTCCCGAAGGCTTTTTGGAAACATC--ATGC-AC
* *** ** * ** ** * * * *
89845 CGAA-GGCTTTTTG--GAAAC-ATCATGCACTGAAGGGC-TTACAGATG-ACCCGAAGGC--TTT
59 TGAAGGGCTTACAGATGACCCGA--AGGCTTTGAA-AACATCA-AAAAGCTCCCGAAGGCTTTTT
* * * * *** ** * ** ** * *
89902 GAAAACATCAAAAGCTCCCGAA-GGCTTTTTG--GAAAC-ATCATGCACTGAAGGGC-TTACAGA
120 GGAAACATC--ATGC-ACTGAAGGGCTTACAGATGACCCGA--AGGCTTTGAA-AACATCA-AAA
* * * * * * *** *
89962 TG-ACCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAAGG-CATTTTGGA-AA
178 AGCTCCCGAAGGCTTTTTGGAAACATC---ATGC-ACTGAAGGAC-TTACAGATGA
* * ** ** * * * * * * *
90013 CATC--ATGCACTGAAGGGC-TTACAGATG-ACCCGAAGGC--TTTGAAAACATCAAAAAGCTCC
1 C-CCGAAGGCTTTGAA-AACATCA-AAAAGCTCCCGAAGGCTTTTTGGAAACATC---ATGC-AC
* *** ** * * ** * * * *
90072 CGAA-GGCTTTTTG--GAAAC-ATCATGCATTGAAGGGC-TTACAGATG-ACCCGAAGGC--TTT
59 TGAAGGGCTTACAGATGACCCGA--AGGCTTTGAA-AACATCA-AAAAGCTCCCGAAGGCTTTTT
* * * * *** ** * ** ** *
90129 GAAAACATCAAAAAAGCTCCCGAA-GGCTTTTTG--GAAAC-ATCATGCACTGAAGGGC-TTACA
120 GGAAACATC----ATGC-ACTGAAGGGCTTACAGATGACCCGA--AGGCTTTGAA-AACATCA-A
* * * * * * * * * * ***
90189 GATG-ACCCGAAGGC--ATTGAAAACATTAAAAAGCTCCCGAA-GCCTTTTTG--GA
176 AAAGCTCCCGAAGGCTTTTTGGAAACA-T--CATGC-ACTGAAGGACTTACAGATGA
** * * ** * * * * * * *
90240 AAC-ATCATGCATTGAAGGGC-TTACAGATG-ACCCGAAGGC--TTTGAAAACATCAAAAAGCTC
1 CCCGA--AGGCTTTGAA-AACATCA-AAAAGCTCCCGAAGGCTTTTTGGAAACATC---ATGC-A
* * *** ** * ** ** * * * *
90300 CCGAA-GCCTTTTTG--GAAAC-ATCATGCACTGAAGGGC-TTACAGATG-ACCCGAAGGC--TT
58 CTGAAGGGCTTACAGATGACCCGA--AGGCTTTGAA-AACATCA-AAAAGCTCCCGAAGGCTTTT
* * * * *** ** * ** ** *
90357 TGAAAACATCAAAAAGCTCCCGAA-GGCTTTTTG--GAAAC-ATCATGCACTGAAGGGC-TTAGA
119 TGGAAACATC---ATGC-ACTGAAGGGCTTACAGATGACCCGA--AGGCTTTGAA-AACATCA-A
* * * *
90417 GATG-ACCCGAAGGC--TTT-GAAA-A-CAT---C--AA--A---A-AGCT--
176 AAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGA
* * * *
90451 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCC
1 CCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC---ATGC-ACT
*** ** * ** ** * * * *
90516 GAA-GGCTTTTTG--GAAAC-ATCATGCACTGAAGGGC-TTACAGATG-ACCCGAAGGC--TTT-
60 GAAGGGCTTACAGATGACCCGA--AGGCTTTGAA-AACATCA-AAAAGCTCCCGAAGGCTTTTTG
*
90572 GAAA-A-CAT-CA---AA------A-AGCT--CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCC
121 GAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGC--TTTGAAAACATCAAAAAGCTCC
* * * ***
90622 CGAAGGCTTTTTGAAAACATCAAAAAG-ATCCCGAAGG-CTTTTTG--GA
184 CGAAGGCTTTTTGGAAACATC---ATGCA--CTGAAGGACTTACAGATGA
** * ** * * * * *
90668 AGC-ATCATGCACTGAAGGAC-TTACAGATG-ACCCGAAGGC--TTT-GAAA-A-CAT-CA---A
1 CCCGA--AGGCTTTGAA-AACATCA-AAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGA
* * * * ***
90721 A------A-AGAT--CCCGAAGGCTTTTTGGAAACATC--AT-GC-ACTGAAGGAC-TTACAGAT
62 AGGGCTTACAGATGACCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAAGG-CTTTTTGGA-
* * * ** ** * * * *
90772 GAC-CCGAAGGCTTTGAA-AACAT-CAAAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAAAGCT
123 AACATC--ATGCACTGAAGGGCTTAC-AGATG-ACCCGAAGGC--TTTGAAAACATCAAAAAGCT
*
90834 CCCGAAGTC-TTTTGGAAACATCATGCACTGAAGGACTTACAGATGA
182 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGA
90880 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
90945 CTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCAT
66 CTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCAT
*
91010 GCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTT
131 GCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTT
91075 GGAAACATCATGCACTGAAGGACTTACAGATGA
196 GGAAACATCATGCACTGAAGGACTTACAGATGA
* *
91108 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCTGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
91173 CTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCAT
66 CTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCAT
*
91238 GCACTGAAGGGCTTATAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTT
131 GCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTT
*
91303 GGAAACATCATGCACTGAAGGGCTTACAGATGA
196 GGAAACATCATGCACTGAAGGACTTACAGATGA
*
91336 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCGTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
*
91401 CTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCAT
66 CTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCAT
*
91466 GCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTT
131 GCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTT
*
91531 GGAAACATCATGCACTGAAGGGCTTACAGATGA
196 GGAAACATCATGCACTGAAGGACTTACAGATGA
* * *
91564 CCCGAAGGCATTGAAAACATTAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCATTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
*
91629 CTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGTCTTTTTGGAAACATCAT
66 CTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCAT
91694 GCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTT
131 GCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTT
*
91759 GGAAACATCATGCACTGAAGGGCTTACAGATGA
196 GGAAACATCATGCACTGAAGGACTTACAGATGA
91792 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTT-GAAA-A-CAT-CA---AA---
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
*
91847 ---A-AGCT--CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
66 CTTACAGATGACCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
91906 ATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTT
129 ATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTT
*
91971 TT-GAAA-A-CAT---C--AA--A---A-AGCT--
194 TTGGAAACATCATGCACTGAAGGACTTACAGATGA
* *
91990 CCCGAAGGCTTTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAGCATCATGCACTGAAG
1 CCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
* *
92055 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATC
64 GGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
*
92120 ATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTT
129 ATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTT
*
92185 TTGAAAACATCA
194 TTGGAAACATCA
92197 AAAAGCTCCC
Statistics
Matches: 3546, Mismatches: 254, Indels: 389
0.85 0.06 0.09
Matches are distributed among these distances:
194 7 0.00
195 1 0.00
196 7 0.00
197 11 0.00
198 31 0.01
199 1 0.00
200 39 0.01
201 8 0.00
202 3 0.00
203 8 0.00
204 2 0.00
205 2 0.00
206 3 0.00
207 4 0.00
208 3 0.00
209 6 0.00
210 15 0.00
211 190 0.05
212 54 0.02
213 46 0.01
214 349 0.10
215 8 0.00
216 33 0.01
217 11 0.00
218 4 0.00
219 2 0.00
220 4 0.00
221 2 0.00
222 1 0.00
223 2 0.00
224 5 0.00
225 5 0.00
226 250 0.07
227 733 0.21
228 1345 0.38
229 262 0.07
230 56 0.02
231 29 0.01
232 4 0.00
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.21
Consensus pattern (228 bp):
CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
CTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCAT
GCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTT
GGAAACATCATGCACTGAAGGACTTACAGATGA
Found at i:89011 original size:30 final size:30
Alignment explanation
Indices: 88966--89077 Score: 183
Period size: 30 Copynumber: 3.8 Consensus size: 30
88956 TTACAGATGA
88966 CCCGAAGGC-TTTGAAAACATCAAAAAGCT
1 CCCGAAGGCTTTTGAAAACATCAAAAAGCT
88995 CCCGAAGGCTTTTGAAAACATCAAAAAGCT
1 CCCGAAGGCTTTTGAAAACATCAAAAAGCT
89025 CCCGAAGGCTTTTTGAAAACATC-AAAAGCT
1 CCCGAAGGC-TTTTGAAAACATCAAAAAGCT
* *
89055 CCCGAAGTCTTTTGGAAACATCA
1 CCCGAAGGCTTTTGAAAACATCA
89078 TGCACTGAAG
Statistics
Matches: 78, Mismatches: 2, Indels: 5
0.92 0.02 0.06
Matches are distributed among these distances:
29 21 0.27
30 44 0.56
31 13 0.17
ACGTcount: A:0.38, C:0.24, G:0.17, T:0.21
Consensus pattern (30 bp):
CCCGAAGGCTTTTGAAAACATCAAAAAGCT
Found at i:89132 original size:135 final size:136
Alignment explanation
Indices: 88890--89153 Score: 462
Period size: 135 Copynumber: 1.9 Consensus size: 136
88880 TTACAGATGA
*
88890 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
88955 CTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGC-TTTTGAAAACATCAA
66 CTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCAA
89019 AAAGCT
131 AAAGCT
*
89025 CCCGAAGGCTTTTTGAAAACATC-AAAAGCTCCCGAAGTC-TTTTGGAAACATCATGCACTGAAG
1 CCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
*
89088 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
64 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATC
89153 A
129 A
89154 TGCACTGAAG
Statistics
Matches: 123, Mismatches: 3, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
135 83 0.67
136 28 0.23
137 12 0.10
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.21
Consensus pattern (136 bp):
CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
CTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCAA
AAAGCT
Found at i:89151 original size:76 final size:76
Alignment explanation
Indices: 89025--89760 Score: 1307
Period size: 76 Copynumber: 9.7 Consensus size: 76
89015 TCAAAAAGCT
*
89025 CCCGAAGGCTTTTTGAAAACATC-AAAAGCTCCCGAAGTC-TTTTGGAAACATCATGCACTGAAG
1 CCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
89088 GACTTACAGATGA
64 GACTTACAGATGA
*
89101 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
89166 CTTACAGATGA
66 CTTACAGATGA
89177 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
89242 CTTACAGATGA
66 CTTACAGATGA
89253 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGC-TTTTGGAAACATCATGCACTGAAGGA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
89317 CTTACAGATGA
66 CTTACAGATGA
* *
89328 CCCGAAGGCTTTAAAAACATCAAAAAGCTCCTGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
89393 CTTACAGATGA
66 CTTACAGATGA
* *
89404 CCCGAAAGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
*
89469 CTTATAGATGA
66 CTTACAGATGA
* *
89480 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAATATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
89545 CTTACAGATGA
66 CTTACAGATGA
* *
89556 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCGTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
89621 CTTACAGATGA
66 CTTACAGATGA
* *
89632 CCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAATATCATGCACTGAAGGA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
89697 CTTACAGATGA
66 CTTACAGATGA
*
89708 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCA
89761 AAAAGCTCCC
Statistics
Matches: 635, Mismatches: 22, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
74 12 0.02
75 88 0.14
76 535 0.84
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.22
Consensus pattern (76 bp):
CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
CTTACAGATGA
Found at i:89755 original size:31 final size:31
Alignment explanation
Indices: 89708--89791 Score: 136
Period size: 31 Copynumber: 2.8 Consensus size: 31
89698 TTACAGATGA
89708 CCCGAAGGC--TTTGAAAACATCAAAAAGCT
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
89737 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
* *
89768 CCCGAAGTCTTTTTGGAAACATCA
1 CCCGAAGGCTTTTTGAAAACATCA
89792 TGCACTGAAG
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
29 9 0.18
31 42 0.82
ACGTcount: A:0.37, C:0.24, G:0.17, T:0.23
Consensus pattern (31 bp):
CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
Found at i:89772 original size:107 final size:106
Alignment explanation
Indices: 89632--89866 Score: 411
Period size: 107 Copynumber: 2.2 Consensus size: 106
89622 TTACAGATGA
*
89632 CCCGAAGGC--TTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAATATCATGCACTGAAG
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
89695 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
66 GACTTACAGATGACCCGAAGGCTTTGAAAACATC-AAAAGCT
* *
89737 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGTCTTTTTGGAAACATCATGCACTGAAG
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
89802 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAGCT
66 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAGCT
*
89843 CCCGAAGGCTTTTTGGAAACATCA
1 CCCGAAGGCTTTTTGAAAACATCA
89867 TGCACTGAAG
Statistics
Matches: 124, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
105 9 0.07
106 30 0.24
107 85 0.69
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (106 bp):
CCCGAAGGCTTTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAGCT
Found at i:90037 original size:76 final size:76
Alignment explanation
Indices: 89737--90474 Score: 1336
Period size: 76 Copynumber: 9.7 Consensus size: 76
89727 TCAAAAAGCT
*
89737 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGTCTTTTTGGAAACATCATGCACTGAAG
1 CCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
*
89802 GACTTACAGATGA
64 GGCTTACAGATGA
89815 CCCGAAGGCTTTGAAAACATC-AAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
89879 CTTACAGATGA
66 CTTACAGATGA
89890 CCCGAAGGCTTTGAAAACATC-AAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
89954 CTTACAGATGA
66 CTTACAGATGA
*
89965 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCATTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
90030 CTTACAGATGA
66 CTTACAGATGA
*
90041 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCATTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
90106 CTTACAGATGA
66 CTTACAGATGA
90117 CCCGAAGGCTTTGAAAACATCAAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGG
1 CCCGAAGGCTTTGAAAACATC-AAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGG
90182 GCTTACAGATGA
65 GCTTACAGATGA
* * * *
90194 CCCGAAGGCATTGAAAACATTAAAAAGCTCCCGAAGCCTTTTTGGAAACATCATGCATTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
90259 CTTACAGATGA
66 CTTACAGATGA
*
90270 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGCCTTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
90335 CTTACAGATGA
66 CTTACAGATGA
90346 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
*
90411 CTTAGAGATGA
66 CTTACAGATGA
*
90422 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCA
90475 AAAAGCTCCC
Statistics
Matches: 642, Mismatches: 16, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
75 148 0.23
76 412 0.64
77 73 0.11
78 9 0.01
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.22
Consensus pattern (76 bp):
CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
CTTACAGATGA
Found at i:90469 original size:31 final size:31
Alignment explanation
Indices: 90422--90536 Score: 207
Period size: 31 Copynumber: 3.8 Consensus size: 31
90412 TTAGAGATGA
90422 CCCGAAGGC--TTTGAAAACATCAAAAAGCT
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
90451 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
90482 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
*
90513 CCCGAAGGCTTTTTGGAAACATCA
1 CCCGAAGGCTTTTTGAAAACATCA
90537 TGCACTGAAG
Statistics
Matches: 83, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 9 0.11
31 74 0.89
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.22
Consensus pattern (31 bp):
CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
Found at i:90517 original size:62 final size:60
Alignment explanation
Indices: 90422--90662 Score: 253
Period size: 62 Copynumber: 4.2 Consensus size: 60
90412 TTAGAGATGA
90422 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAAAGCT
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAAAGCT
* *
90482 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC---ATGC-
1 CCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAAAGCT
* * * * *
90540 ACTGAAGGGC-TT------A-C-AGATG-ACCCGAAGGC--TTTGAAAACATCAAAAAGCT
1 CCCGAA-GGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAAAGCT
*
90589 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAAAGAT
1 CCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAAAGCT
90651 CCCGAAGGCTTT
1 CCCGAAGGCTTT
90663 TTGGAAGCAT
Statistics
Matches: 145, Mismatches: 15, Indels: 42
0.72 0.07 0.21
Matches are distributed among these distances:
45 11 0.08
47 9 0.06
48 9 0.06
49 5 0.03
50 1 0.01
51 2 0.01
56 2 0.01
57 1 0.01
58 5 0.03
59 9 0.06
60 21 0.14
62 70 0.48
ACGTcount: A:0.37, C:0.23, G:0.19, T:0.22
Consensus pattern (60 bp):
CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAAAGCT
Found at i:90603 original size:138 final size:138
Alignment explanation
Indices: 90346--90750 Score: 742
Period size: 138 Copynumber: 2.9 Consensus size: 138
90336 TTACAGATGA
90346 CCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
*
90409 GGCTTAGAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATC
66 GGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATC
90474 AAAAAGCT
131 AAAAAGCT
90482 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
90547 GGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATC
66 GGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATC
90612 AAAAAGCT
131 AAAAAGCT
* *
90620 CCCGAAGGCTTTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAGCATCATGCACTGAAG
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
* * *
90685 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATC
66 GGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATC
90750 A
131 A
90751 TGCACTGAAG
Statistics
Matches: 261, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
136 9 0.03
138 252 0.97
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.21
Consensus pattern (138 bp):
CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
GGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATC
AAAAAGCT
Found at i:90607 original size:31 final size:31
Alignment explanation
Indices: 90560--90674 Score: 189
Period size: 31 Copynumber: 3.8 Consensus size: 31
90550 TTACAGATGA
90560 CCCGAAGGC--TTTGAAAACATCAAAAAGCT
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
90589 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
*
90620 CCCGAAGGCTTTTTGAAAACATCAAAAAGAT
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
* *
90651 CCCGAAGGCTTTTTGGAAGCATCA
1 CCCGAAGGCTTTTTGAAAACATCA
90675 TGCACTGAAG
Statistics
Matches: 81, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
29 9 0.11
31 72 0.89
ACGTcount: A:0.37, C:0.23, G:0.18, T:0.22
Consensus pattern (31 bp):
CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
Found at i:90750 original size:76 final size:76
Alignment explanation
Indices: 90620--90826 Score: 369
Period size: 76 Copynumber: 2.7 Consensus size: 76
90610 TCAAAAAGCT
*
90620 CCCGAAGGCTTTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAGCATCATGCACTGAAG
1 CCCGAAGGC--TTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
90685 GACTTACAGATGA
64 GACTTACAGATGA
90698 CCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
1 CCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
90763 CTTACAGATGA
66 CTTACAGATGA
* *
90774 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCA
1 CCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCA
90827 AAAAGCTCCC
Statistics
Matches: 126, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
76 117 0.93
78 9 0.07
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (76 bp):
CCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
CTTACAGATGA
Found at i:90853 original size:30 final size:30
Alignment explanation
Indices: 90774--90856 Score: 132
Period size: 31 Copynumber: 2.8 Consensus size: 30
90764 TTACAGATGA
90774 CCCGAAGGC-TTTGAAAACATCAAAAAGCT
1 CCCGAAGGCTTTTGAAAACATCAAAAAGCT
90803 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
1 CCCGAAGGC-TTTTGAAAACATCAAAAAGCT
* *
90834 CCCGAAGTCTTTTGGAAACATCA
1 CCCGAAGGCTTTTGAAAACATCA
90857 TGCACTGAAG
Statistics
Matches: 50, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
29 9 0.18
30 13 0.26
31 28 0.56
ACGTcount: A:0.37, C:0.24, G:0.17, T:0.22
Consensus pattern (30 bp):
CCCGAAGGCTTTTGAAAACATCAAAAAGCT
Found at i:90870 original size:182 final size:183
Alignment explanation
Indices: 90589--91388 Score: 765
Period size: 182 Copynumber: 4.3 Consensus size: 183
90579 TCAAAAAGCT
90589 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAAAGATCCC
1 CCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAAAGATCCC
*
90654 GAAGGCTTTTTGGAAGCATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATC
64 GAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATC
90719 AAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGA
129 AAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGA
*
90774 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAAAGATCCCGA
*
90839 AGTC-TTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAA
66 AGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAA
* *
90903 AAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGGCTTACAGATGA
131 AAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGA
90956 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTT-GAAA-A-CAT---C--AA--A
* * * * *** **
91021 CTTACAGATGACCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAAGG-CTTTTTG--GAAAC
56 ---A-AGAT--CCCGAAGGCTTTTTGGAAACATC---ATGC-ACTGAAGGACTTACAGATGACCC
* ** * * * * * * *
91081 -ATCATGCACTGAAGGAC-TTACAGATGA-CCCGAAGGC--TTTGAAAACATCAAAAAGCTCCTG
111 GA--AGGCTTTGAA-AACATCA-AAAAGATCCCGAAGGCTTTTTGGAAACATC---ATGC-ACTG
***
91141 AAGG-CTTTTTG--GA
168 AAGGACTTACAGATGA
** * ** * * * * * *
91154 AAC-ATCATGCACTGAAGGAC-TTACAGATG-ACCCGAAGGC--TTTGAAAACATCAAAAAGCTC
1 CCCGA--AGGCTTTGAA-AACATCA-AAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAAAGATC
* *
91214 CCGAAGGCTTTTTGGAAACATCATGCACTGAAGGGCTTATAGATGACCCGAAGGCTTTGAAAACA
62 CCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACA
* *
91279 TCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGGCTTACAGATGA
127 TCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGA
* *
91336 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCGTTTTGGAAACATCA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCA
91389 TGCACTGAAG
Statistics
Matches: 491, Mismatches: 74, Indels: 102
0.74 0.11 0.15
Matches are distributed among these distances:
179 13 0.03
180 25 0.05
181 45 0.09
182 159 0.32
183 101 0.21
184 2 0.00
185 12 0.02
187 1 0.00
188 1 0.00
189 2 0.00
190 2 0.00
191 1 0.00
192 1 0.00
194 3 0.01
195 2 0.00
196 7 0.01
197 27 0.05
198 14 0.03
199 36 0.07
200 24 0.05
201 13 0.03
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.21
Consensus pattern (183 bp):
CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAAAGATCCCGA
AGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAA
AAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGA
Found at i:90951 original size:76 final size:76
Alignment explanation
Indices: 90803--91844 Score: 1924
Period size: 76 Copynumber: 13.7 Consensus size: 76
90793 TCAAAAAGCT
*
90803 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGTC-TTTTGGAAACATCATGCACTGAAG
1 CCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
*
90867 GACTTACAGATGA
64 GGCTTACAGATGA
90880 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
90945 CTTACAGATGA
66 CTTACAGATGA
*
90956 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
91021 CTTACAGATGA
66 CTTACAGATGA
*
91032 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
91097 CTTACAGATGA
66 CTTACAGATGA
* *
91108 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCTGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
91173 CTTACAGATGA
66 CTTACAGATGA
91184 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
*
91249 CTTATAGATGA
66 CTTACAGATGA
91260 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
91325 CTTACAGATGA
66 CTTACAGATGA
*
91336 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCGTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
91401 CTTACAGATGA
66 CTTACAGATGA
* *
91412 CCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
91477 CTTACAGATGA
66 CTTACAGATGA
91488 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
91553 CTTACAGATGA
66 CTTACAGATGA
* * *
91564 CCCGAAGGCATTGAAAACATTAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCATTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
91629 CTTACAGATGA
66 CTTACAGATGA
*
91640 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGTCTTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
91705 CTTACAGATGA
66 CTTACAGATGA
91716 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
91781 CTTACAGATGA
66 CTTACAGATGA
*
91792 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCA
91845 AAAAGCTCCC
Statistics
Matches: 941, Mismatches: 23, Indels: 3
0.97 0.02 0.00
Matches are distributed among these distances:
75 28 0.03
76 904 0.96
77 9 0.01
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.21
Consensus pattern (76 bp):
CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
CTTACAGATGA
Found at i:91839 original size:31 final size:31
Alignment explanation
Indices: 91792--91906 Score: 207
Period size: 31 Copynumber: 3.8 Consensus size: 31
91782 TTACAGATGA
91792 CCCGAAGGC--TTTGAAAACATCAAAAAGCT
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
91821 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
91852 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
*
91883 CCCGAAGGCTTTTTGGAAACATCA
1 CCCGAAGGCTTTTTGAAAACATCA
91907 TGCACTGAAG
Statistics
Matches: 83, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 9 0.11
31 74 0.89
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.22
Consensus pattern (31 bp):
CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
Found at i:91887 original size:62 final size:60
Alignment explanation
Indices: 91792--92032 Score: 253
Period size: 62 Copynumber: 4.2 Consensus size: 60
91782 TTACAGATGA
91792 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAAAGCT
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAAAGCT
* *
91852 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC---ATGC-
1 CCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAAAGCT
* * * * *
91910 ACTGAAGGGC-TT------A-C-AGATG-ACCCGAAGGC--TTTGAAAACATCAAAAAGCT
1 CCCGAA-GGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAAAGCT
*
91959 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAAAGAT
1 CCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAAAGCT
92021 CCCGAAGGCTTT
1 CCCGAAGGCTTT
92033 TTGGAAGCAT
Statistics
Matches: 145, Mismatches: 15, Indels: 42
0.72 0.07 0.21
Matches are distributed among these distances:
45 11 0.08
47 9 0.06
48 9 0.06
49 5 0.03
50 1 0.01
51 2 0.01
56 2 0.01
57 1 0.01
58 5 0.03
59 9 0.06
60 21 0.14
62 70 0.48
ACGTcount: A:0.37, C:0.23, G:0.19, T:0.22
Consensus pattern (60 bp):
CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAAAGCT
Found at i:91943 original size:107 final size:107
Alignment explanation
Indices: 91640--92303 Score: 673
Period size: 107 Copynumber: 6.2 Consensus size: 107
91630 TTACAGATGA
*
91640 CCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAAGTCTTTTTGGAAACATCATGCACTGAAG
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
*
91703 GGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
66 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
* * * * *** * * * **
91745 CCCGAAGGCTTTTTGGAAACATC---ATGC-ACTGAAGGGC-TTACAGATGAC-CCGAAGGCTTT
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAA-GGCTTTTTGGA-AACATC--ATGCACT
* * * * *
91804 GAA-AACAT-CAAAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAAAGCT
62 GAAGGACTTAC-AGATG-ACCCGAAGGC--TTTGAAAACATCAAAAAGCT
91852 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
*
91917 GGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
66 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
* *
91959 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAAAG-ATCC
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC---ATGCA--C
* *** ** * ** * * * * *
92023 CGAAGG-CTTTTTG--GAAGC-ATCATGCACTGAAGGAC-TTACAGATG-A
61 TGAAGGACTTACAGATGACCCGA--AGGCTTTGAA-AACATCA-AAAAGCT
*
92068 CCCGAAGGC--TTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
92131 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
66 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
*
92173 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGTCTTTTTGGAAACATCATGCACTGAAG
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
*
92238 GACTTACAGGTGACCCGAAGGCTTTGAAAACATCAAAAAGCT
66 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
* *
92280 CCCGAAAGCTTTTTGGAAACATCA
1 CCCGAAGGCTTTTTGAAAACATCA
92304 TGCACTGAAG
Statistics
Matches: 448, Mismatches: 75, Indels: 70
0.76 0.13 0.12
Matches are distributed among these distances:
103 16 0.04
104 23 0.05
105 44 0.10
106 3 0.01
107 284 0.63
108 3 0.01
109 35 0.08
110 24 0.05
111 16 0.04
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (107 bp):
CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
Found at i:91973 original size:138 final size:138
Alignment explanation
Indices: 91716--92120 Score: 751
Period size: 138 Copynumber: 2.9 Consensus size: 138
91706 TTACAGATGA
91716 CCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
91779 GGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATC
66 GGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATC
91844 AAAAAGCT
131 AAAAAGCT
91852 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
91917 GGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATC
66 GGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATC
91982 AAAAAGCT
131 AAAAAGCT
* *
91990 CCCGAAGGCTTTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAGCATCATGCACTGAAG
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
* * *
92055 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATC
66 GGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATC
92120 A
131 A
92121 TGCACTGAAG
Statistics
Matches: 262, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
136 9 0.03
138 253 0.97
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.21
Consensus pattern (138 bp):
CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
GGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATC
AAAAAGCT
Found at i:91977 original size:31 final size:31
Alignment explanation
Indices: 91930--92044 Score: 189
Period size: 31 Copynumber: 3.8 Consensus size: 31
91920 TTACAGATGA
91930 CCCGAAGGC--TTTGAAAACATCAAAAAGCT
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
91959 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
*
91990 CCCGAAGGCTTTTTGAAAACATCAAAAAGAT
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
* *
92021 CCCGAAGGCTTTTTGGAAGCATCA
1 CCCGAAGGCTTTTTGAAAACATCA
92045 TGCACTGAAG
Statistics
Matches: 81, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
29 9 0.11
31 72 0.89
ACGTcount: A:0.37, C:0.23, G:0.18, T:0.22
Consensus pattern (31 bp):
CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
Found at i:92120 original size:76 final size:76
Alignment explanation
Indices: 91990--92196 Score: 369
Period size: 76 Copynumber: 2.7 Consensus size: 76
91980 TCAAAAAGCT
*
91990 CCCGAAGGCTTTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAGCATCATGCACTGAAG
1 CCCGAAGGC--TTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
92055 GACTTACAGATGA
64 GACTTACAGATGA
92068 CCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
1 CCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
92133 CTTACAGATGA
66 CTTACAGATGA
* *
92144 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCA
1 CCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCA
92197 AAAAGCTCCC
Statistics
Matches: 126, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
76 117 0.93
78 9 0.07
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (76 bp):
CCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
CTTACAGATGA
Found at i:92191 original size:31 final size:31
Alignment explanation
Indices: 92144--92227 Score: 136
Period size: 31 Copynumber: 2.8 Consensus size: 31
92134 TTACAGATGA
92144 CCCGAAGGC--TTTGAAAACATCAAAAAGCT
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
92173 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
* *
92204 CCCGAAGTCTTTTTGGAAACATCA
1 CCCGAAGGCTTTTTGAAAACATCA
92228 TGCACTGAAG
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
29 9 0.18
31 42 0.82
ACGTcount: A:0.37, C:0.24, G:0.17, T:0.23
Consensus pattern (31 bp):
CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
Found at i:92266 original size:76 final size:76
Alignment explanation
Indices: 92173--92911 Score: 1325
Period size: 76 Copynumber: 9.7 Consensus size: 76
92163 TCAAAAAGCT
*
92173 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGTCTTTTTGGAAACATCATGCACTGAAG
1 CCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
*
92238 GACTTACAGGTGA
64 GACTTACAGATGA
* *
92251 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAAGCTTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
92316 CTTACAGATGA
66 CTTACAGATGA
92327 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
92392 CTTACAGATGA
66 CTTACAGATGA
92403 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
92468 CTTACAGATGA
66 CTTACAGATGA
* *
92479 CCCGAAGGCTTTAAAAACATCAAAAAGCTCCTGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
92544 CTTACAGATGA
66 CTTACAGATGA
* *
92555 CCCGAAAGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
*
92620 CTTATAGATGA
66 CTTACAGATGA
* *
92631 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAATATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
92696 CTTACAGATGA
66 CTTACAGATGA
* *
92707 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCGTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
92772 CTTACAGATGA
66 CTTACAGATGA
*
92783 CCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
92848 CTTACAGATGA
66 CTTACAGATGA
*
92859 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCA
92912 AAAAGCTCCC
Statistics
Matches: 638, Mismatches: 23, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
76 629 0.99
78 9 0.01
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.22
Consensus pattern (76 bp):
CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
CTTACAGATGA
Found at i:92455 original size:183 final size:179
Alignment explanation
Indices: 91959--92379 Score: 518
Period size: 183 Copynumber: 2.3 Consensus size: 179
91949 TCAAAAAGCT
* *
91959 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAAAGATCCC
1 CCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATC--AAAGCTACC
* *** * * * * * *
92024 GAAGGCTTTTTGGAAGCATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATC
62 GAAGACTTACAGGAAACA-CAGGCACTGAAGAACTAAAAGCT-ACCCGAAGGCTTTGAAAACATC
*
92089 AAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGA
125 AAAAAGATCCCGAAAGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGA
*
92144 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATC--AAAGCTACCGA
* *** * * * * *
92209 AGTCTTTTTGGAAACATCATGCACTGAAGGACTTACAGGTGACCCGAAGGCTTTGAAAACATCAA
64 AGACTTACAGGAAACA-CAGGCACTGAAGAACTAAAAGCT-ACCCGAAGGCTTTGAAAACATCAA
* *
92274 AAAGCTCCCGAAAGCTTTTTGGAAACATCATGCACTGAAGGGCTTACAGATGA
127 AAAGATCCCGAAAGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGA
*
92327 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCA
92380 TGCACTGAAG
Statistics
Matches: 228, Mismatches: 8, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
181 1 0.00
183 218 0.96
185 9 0.04
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (179 bp):
CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCAAAGCTACCGAAG
ACTTACAGGAAACACAGGCACTGAAGAACTAAAAGCTACCCGAAGGCTTTGAAAACATCAAAAAG
ATCCCGAAAGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGA
Found at i:92906 original size:31 final size:31
Alignment explanation
Indices: 92859--92942 Score: 136
Period size: 31 Copynumber: 2.8 Consensus size: 31
92849 TTACAGATGA
92859 CCCGAAGGC--TTTGAAAACATCAAAAAGCT
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
92888 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
* *
92919 CCCGAAGTCTTTTTGGAAACATCA
1 CCCGAAGGCTTTTTGAAAACATCA
92943 TGCACTGAAG
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
29 9 0.18
31 42 0.82
ACGTcount: A:0.37, C:0.24, G:0.17, T:0.23
Consensus pattern (31 bp):
CCCGAAGGCTTTTTGAAAACATCAAAAAGCT
Found at i:92909 original size:183 final size:183
Alignment explanation
Indices: 92707--93094 Score: 708
Period size: 183 Copynumber: 2.1 Consensus size: 183
92697 TTACAGATGA
92707 CCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAAGGCGTTTTGGAAACATCATGCACTGAAG
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCGTTTTGGAAACATCATGCACTGAAG
*
92770 GGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATC
66 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATC
92835 ATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
131 ATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
* *
92888 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGTCTTTTTGGAAACATCATGCACTGAAG
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCGTTTTGGAAACATCATGCACTGAAG
*
92953 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
66 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATC
*
93018 ATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
131 ATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
*
93071 CCCGAAGGCTTTTTGGAAACATCA
1 CCCGAAGGCTTTTTGAAAACATCA
93095 TGCACTGAAG
Statistics
Matches: 199, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
181 9 0.05
183 190 0.95
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21
Consensus pattern (183 bp):
CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCGTTTTGGAAACATCATGCACTGAAG
GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATC
ATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
Found at i:92914 original size:107 final size:107
Alignment explanation
Indices: 92783--93018 Score: 431
Period size: 107 Copynumber: 2.2 Consensus size: 107
92773 TTACAGATGA
92783 CCCGAAGGC--TTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
92846 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
66 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
* *
92888 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGTCTTTTTGGAAACATCATGCACTGAAG
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
92953 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
66 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
*
92995 CCCGAAGGCTTTTTGGAAACATCA
1 CCCGAAGGCTTTTTGAAAACATCA
93019 TGCACTGAAG
Statistics
Matches: 126, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
105 9 0.07
107 117 0.93
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.22
Consensus pattern (107 bp):
CCCGAAGGCTTTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
Found at i:93103 original size:335 final size:335
Alignment explanation
Indices: 92564--93246 Score: 1285
Period size: 335 Copynumber: 2.0 Consensus size: 335
92554 ACCCGAAAGC
* *
92564 TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGGCTTATAGAT
1 TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGAT
*
92629 GACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAATATCATGCACTGAAG
66 GACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
92694 GGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCGTTTTGGAAACATC
131 GGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCGTTTTGGAAACATC
92759 ATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTT
196 ATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTT
92824 TTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTC
261 TTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTC
92889 CCGAAGGCTT
326 CCGAAGGCTT
*
92899 TTTGAAAACATCAAAAAGCTCCCGAAGTCTTTTTGGAAACATCATGCACTGAAGGACTTACAGAT
1 TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGAT
92964 GACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
66 GACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
*
93029 GGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
131 GGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCGTTTTGGAAACATC
*
93094 ATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTT
196 ATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTT
*
93159 TTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTC
261 TTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTC
*
93224 CCGAAGTCTT
326 CCGAAGGCTT
*
93234 TTTGGAAACATCA
1 TTTGAAAACATCA
93247 TGCACTGAAG
Statistics
Matches: 339, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
335 339 1.00
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.22
Consensus pattern (335 bp):
TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGAT
GACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
GGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCGTTTTGGAAACATC
ATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTT
TTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTC
CCGAAGGCTT
Found at i:93179 original size:411 final size:412
Alignment explanation
Indices: 92479--93323 Score: 1552
Period size: 411 Copynumber: 2.1 Consensus size: 412
92469 TTACAGATGA
* *
92479 CCCGAAGGC--TTTAAAAACATCAAAAAGCTCCTGAAGGCTTTTTGGAAACATCATGCACTGAAG
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
92542 GACTTACAGATGACCCGAAAGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
66 GACTTACAGATGACCCGAAAGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
*
92607 ATGCACTGAAGGGCTTATAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTT
131 ATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTT
*
92672 TTGGAAATATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTC
196 TTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTC
92737 CCGAAGGCGTTTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACA
261 CCGAAGGCGTTTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACA
92802 TCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGG
326 TCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGG
92867 -CTTTGAAAACATCAAAAAGCT
391 TCTTTGAAAACATCAAAAAGCT
*
92888 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGTCTTTTTGGAAACATCATGCACTGAAG
1 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
*
92953 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
66 GACTTACAGATGACCCGAAAGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
93018 ATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTT
131 ATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTT
93083 TTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTC
196 TTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTC
*
93148 CCGAAGGCTTTTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACA
261 CCGAAGGCGTTTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACA
* * *
93213 TCAAAAAGCTCCCGAAGTCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCTAAGG
326 TCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGG
* *
93278 TTTTTGAAAACATCAAAAAGGT
391 TCTTTGAAAACATCAAAAAGCT
*
93300 CCCGAAGGCTTTTTGGAAACATCA
1 CCCGAAGGCTTTTTGAAAACATCA
93324 TGCACTGAAG
Statistics
Matches: 420, Mismatches: 13, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
409 9 0.02
411 369 0.88
412 42 0.10
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.22
Consensus pattern (412 bp):
CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
GACTTACAGATGACCCGAAAGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
ATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTT
TTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTC
CCGAAGGCGTTTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACA
TCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGG
TCTTTGAAAACATCAAAAAGCT
Found at i:93396 original size:229 final size:228
Alignment explanation
Indices: 92888--93497 Score: 1103
Period size: 229 Copynumber: 2.7 Consensus size: 228
92878 TCAAAAAGCT
*
92888 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGTCTTTTTGGAAACATCATGCACTGAAG
1 CCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
92953 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
64 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
*
93018 ATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTT
129 ATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTT
*
93083 TTGGAAACATCATGCACTGAAGGGCTTACAGATGA
194 TTGGAAACATCATGCACTGAAGGACTTACAGATGA
*
93118 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
*
93183 CTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGTCTTTTTGGAAACATCAT
66 CTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCAT
* * *
93248 GCACTGAAGGACTTACAGATGACCCTAAGGTTTTTGAAAACATCAAAAAGGTCCCGAAGGCTTTT
131 GCACTGAAGGACTTACAGATGACCCGAAGG-CTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTT
93313 TGGAAACATCATGCACTGAAGGACTTACAGATGA
195 TGGAAACATCATGCACTGAAGGACTTACAGATGA
93347 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
* *
93412 CTTACAGATGACCCGAAGGTTTTGAAAACTTCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCAT
66 CTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCAT
93477 GCACTGAAGGACTTACAGATG
131 GCACTGAAGGACTTACAGATG
93498 TGAGAAATAG
Statistics
Matches: 367, Mismatches: 12, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
228 146 0.40
229 212 0.58
230 9 0.02
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.22
Consensus pattern (228 bp):
CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
CTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCAT
GCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTT
GGAAACATCATGCACTGAAGGACTTACAGATGA
Found at i:93524 original size:76 final size:76
Alignment explanation
Indices: 92888--93497 Score: 1103
Period size: 76 Copynumber: 8.0 Consensus size: 76
92878 TCAAAAAGCT
*
92888 CCCGAAGGCTTTTTGAAAACATCAAAAAGCTCCCGAAGTCTTTTTGGAAACATCATGCACTGAAG
1 CCCGAAGGC--TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAG
92953 GACTTACAGATGA
64 GACTTACAGATGA
*
92966 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
93031 CTTACAGATGA
66 CTTACAGATGA
*
93042 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
93107 CTTACAGATGA
66 CTTACAGATGA
*
93118 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGG
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
93183 CTTACAGATGA
66 CTTACAGATGA
*
93194 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGTCTTTTTGGAAACATCATGCACTGAAGGA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
93259 CTTACAGATGA
66 CTTACAGATGA
* * *
93270 CCCTAAGGTTTTTGAAAACATCAAAAAGGTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGG
1 CCCGAAGG-CTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGG
93335 ACTTACAGATGA
65 ACTTACAGATGA
93347 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
93412 CTTACAGATGA
66 CTTACAGATGA
* *
93423 CCCGAAGGTTTTGAAAACTTCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
1 CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
93488 CTTACAGATG
66 CTTACAGATG
93498 TGAGAAATAG
Statistics
Matches: 518, Mismatches: 13, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
76 437 0.84
77 72 0.14
78 9 0.02
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.22
Consensus pattern (76 bp):
CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
CTTACAGATGA
Found at i:97043 original size:81 final size:82
Alignment explanation
Indices: 96867--97070 Score: 365
Period size: 81 Copynumber: 2.5 Consensus size: 82
96857 ATCAAATCAA
* *
96867 ATCAGATAACTCAAAGAACACTTCCAGAAGATGTTATTAGCACATTCATCTTTCAAATTCAATGA
1 ATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATC-TTCAAATTCAATGA
96932 TTGGTTTTACCAAACCAG
65 TTGGTTTTACCAAACCAG
*
96950 ATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGATCACATTCATC-TCAAATTCAATGAT
1 ATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCAAATTCAATGAT
97014 TGGTTTTACCAAACCAG
66 TGGTTTTACCAAACCAG
97031 ATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAG
1 ATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAG
97071 TATATTGCAT
Statistics
Matches: 117, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
81 70 0.60
83 47 0.40
ACGTcount: A:0.39, C:0.21, G:0.13, T:0.27
Consensus pattern (82 bp):
ATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCAAATTCAATGAT
TGGTTTTACCAAACCAG
Found at i:101871 original size:21 final size:21
Alignment explanation
Indices: 101847--101887 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
101837 TAAAAAGTAA
101847 AAATACAAAATGAAAATGCAC
1 AAATACAAAATGAAAATGCAC
*
101868 AAATACAAAATGTAAATGCA
1 AAATACAAAATGAAAATGCA
101888 TGTATGAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.61, C:0.12, G:0.10, T:0.17
Consensus pattern (21 bp):
AAATACAAAATGAAAATGCAC
Found at i:105418 original size:13 final size:13
Alignment explanation
Indices: 105400--105424 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
105390 GTGCTCCGAT
105400 GCCGGCCACCGCC
1 GCCGGCCACCGCC
105413 GCCGGCCACCGC
1 GCCGGCCACCGC
105425 TCTCGGTGGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.60, G:0.32, T:0.00
Consensus pattern (13 bp):
GCCGGCCACCGCC
Found at i:106173 original size:27 final size:25
Alignment explanation
Indices: 106133--106203 Score: 108
Period size: 27 Copynumber: 2.8 Consensus size: 25
106123 TTTGGGCTTG
106133 TAATAATTATTTAATAATAATAATATAA
1 TAATAA-TATTTAATAATAAT-A-ATAA
106161 TAATAATATTTAATAATAATAATAA
1 TAATAATATTTAATAATAATAATAA
106186 TAATAA-ATTTAATAATAA
1 TAATAATATTTAATAATAA
106204 AAAAATTTAA
Statistics
Matches: 43, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
24 12 0.28
25 10 0.23
26 1 0.02
27 14 0.33
28 6 0.14
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (25 bp):
TAATAATATTTAATAATAATAATAA
Found at i:106179 original size:24 final size:24
Alignment explanation
Indices: 106133--106203 Score: 99
Period size: 25 Copynumber: 2.9 Consensus size: 24
106123 TTTGGGCTTG
*
106133 TAATAAT-TATTTAATAATAATAATA
1 TAATAATAAATTTAATAATAAT-A-A
106158 TAATAATAATATTTAATAATAATAA
1 TAATAATAA-ATTTAATAATAATAA
106183 TAATAATAAATTTAATAATAA
1 TAATAATAAATTTAATAATAA
106204 AAAAATTTAA
Statistics
Matches: 43, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
24 12 0.28
25 17 0.40
26 1 0.02
27 13 0.30
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (24 bp):
TAATAATAAATTTAATAATAATAA
Found at i:106203 original size:3 final size:3
Alignment explanation
Indices: 106144--106191 Score: 71
Period size: 3 Copynumber: 16.0 Consensus size: 3
106134 AATAATTATT
*
106144 TAA TAA TAA TAA T-A TAA TAA TAA TATT TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA
106189 TAA
1 TAA
106192 ATTTAATAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
2 2 0.05
3 37 0.90
4 2 0.05
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:110509 original size:10 final size:9
Alignment explanation
Indices: 110460--110526 Score: 52
Period size: 8 Copynumber: 7.8 Consensus size: 9
110450 TTATAAAATG
110460 ATATTTTTA
1 ATATTTTTA
* *
110469 A-AATTATA
1 ATATTTTTA
110477 AT-TTTTTA
1 ATATTTTTA
110485 ATATTTTT-
1 ATATTTTTA
**
110493 AGGTTTTTA
1 ATATTTTTA
*
110502 ATAATTTTTC
1 AT-ATTTTTA
110512 ATATTTTTA
1 ATATTTTTA
110521 A-ATTTT
1 ATATTTT
110527 GTTTATAAAT
Statistics
Matches: 44, Mismatches: 10, Indels: 9
0.70 0.16 0.14
Matches are distributed among these distances:
8 23 0.52
9 14 0.32
10 7 0.16
ACGTcount: A:0.33, C:0.01, G:0.03, T:0.63
Consensus pattern (9 bp):
ATATTTTTA
Found at i:110526 original size:27 final size:25
Alignment explanation
Indices: 110460--110526 Score: 71
Period size: 27 Copynumber: 2.6 Consensus size: 25
110450 TTATAAAATG
* *
110460 ATATTTTTAAAATTATAATTTTTTA
1 ATATTTTTAAATTTTTAATTTTTTA
** *
110485 ATATTTTTAGGTTTTTAATAATTTTTC
1 ATATTTTTAAATTTTTAAT--TTTTTA
110512 ATATTTTTAAATTTT
1 ATATTTTTAAATTTT
110527 GTTTATAAAT
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
25 15 0.45
27 18 0.55
ACGTcount: A:0.33, C:0.01, G:0.03, T:0.63
Consensus pattern (25 bp):
ATATTTTTAAATTTTTAATTTTTTA
Found at i:114028 original size:41 final size:41
Alignment explanation
Indices: 113966--114045 Score: 115
Period size: 41 Copynumber: 2.0 Consensus size: 41
113956 GTCCAGCAGC
*
113966 TGCAGGTTTAATACAACACTATAGTGTACAAGGACACTTTA
1 TGCAGGTTTAATACAACACTATAATGTACAAGGACACTTTA
* ** *
114007 TGCAGGTTTAATTCAGTACTATAATGTGCAAGGACACTT
1 TGCAGGTTTAATACAACACTATAATGTACAAGGACACTT
114046 AGTACAGTGG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (41 bp):
TGCAGGTTTAATACAACACTATAATGTACAAGGACACTTTA
Found at i:119590 original size:29 final size:31
Alignment explanation
Indices: 119524--119590 Score: 75
Period size: 33 Copynumber: 2.2 Consensus size: 31
119514 GTTTTTTTAT
* *
119524 ATTTTATTTCGAAACAACAACGTTCAATTTTTT
1 ATTTTATTTCGAAACAACAAC--TCAATATTTG
*
119557 ATTTTATTTCGAAATAACAA-T-AATATTTG
1 ATTTTATTTCGAAACAACAACTCAATATTTG
119586 ATTTT
1 ATTTT
119591 TTTTGTTTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
29 11 0.35
30 1 0.03
33 19 0.61
ACGTcount: A:0.36, C:0.10, G:0.06, T:0.48
Consensus pattern (31 bp):
ATTTTATTTCGAAACAACAACTCAATATTTG
Found at i:120408 original size:19 final size:18
Alignment explanation
Indices: 120372--120421 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 18
120362 TAGATCTTTG
120372 TATTTTAATTTTCTTTAT
1 TATTTTAATTTTCTTTAT
120390 TATTTGTAATTTT-TATTAT
1 TATTT-TAATTTTCT-TTAT
*
120409 TTTGTTTAATTTT
1 TAT-TTTAATTTT
120422 AGTATTTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 6 0.21
19 20 0.71
20 2 0.07
ACGTcount: A:0.22, C:0.02, G:0.04, T:0.72
Consensus pattern (18 bp):
TATTTTAATTTTCTTTAT
Done.