genome.fa.s568.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000568.1 Hibiscus syriacus cultivar Beakdansim tig00001109_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98564

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3261--3291	2	15.5	2	100	0	62	51	0	0	48	1.00
11331--11372	21	2.0	21	100	0	84	33	28	9	28	1.88
11913--11956	7	6.0	7	82	17	54	18	0	0	81	0.68
11915--11956	13	3.2	13	82	0	57	16	0	0	83	0.65
12344--12464	51	2.4	50	81	10	147	15	32	32	19	1.94
12339--12464	50	2.5	49	81	10	146	15	33	32	19	1.92
12475--12596	51	2.5	49	88	7	169	25	24	23	26	2.00
18208--18426	110	2.0	111	90	0	350	45	9	8	36	1.67
18555--18595	20	2.1	19	90	4	64	41	0	26	31	1.56
18700--18823	51	2.5	50	87	1	176	19	31	34	14	1.92
20266--20345	39	2.1	39	97	0	151	18	23	22	35	1.96
22398--22597	95	2.1	94	90	3	312	36	16	15	33	1.89
22398--22659	95	2.7	95	84	5	269	33	16	16	33	1.92
23632--24303	240	2.7	243	85	6	836	32	23	18	25	1.97
24101--24765	124	5.4	124	89	1	937	32	24	17	25	1.96
24101--24765	246	2.7	246	86	3	951	32	24	17	25	1.96
25182--25216	3	11.7	3	100	0	70	31	0	0	68	0.90
26143--26178	12	2.8	13	95	4	65	16	2	5	75	1.12
26143--26187	13	3.5	13	87	6	65	15	2	4	77	1.02
26199--26260	23	2.7	24	80	11	60	25	8	0	66	1.19
30487--30621	3	45.0	3	78	0	144	40	2	0	56	1.14
30734--30777	16	2.8	16	92	0	70	11	56	13	18	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36002--36034	16	2.1	16	94	5	59	33	18	3	45	1.65
42654--42717	11	6.3	10	77	15	69	82	0	17	0	0.66
42657--42718	13	4.9	12	73	9	52	82	0	17	0	0.67
42654--42718	25	2.6	25	83	16	89	81	0	18	0	0.69
43751--44095	83	4.2	84	89	4	515	28	13	21	36	1.91
44007--44200	105	1.8	105	93	2	336	30	12	22	34	1.92
43926--44283	188	1.9	188	90	3	569	29	13	21	35	1.92
44100--44595	271	1.9	252	83	11	640	28	13	21	35	1.92
43756--44596	354	2.4	354	96	1	1530	28	13	21	36	1.92
44114--44449	83	4.0	83	90	3	525	27	13	22	36	1.92
45326--45983	113	5.8	112	86	4	835	38	13	19	28	1.90
45361--45983	338	1.8	338	89	3	986	38	13	19	27	1.90
46244--46384	3	47.0	3	79	0	156	40	2	0	56	1.14
47712--47926	109	2.0	107	79	7	229	38	9	8	43	1.68
49979--50009	2	15.5	2	100	0	62	51	0	0	48	1.00
50355--50417	30	2.1	30	87	0	90	41	7	6	44	1.59
51250--51297	21	2.3	21	89	7	71	47	4	0	47	1.21
56426--56479	22	2.5	21	81	6	63	42	3	14	38	1.64
58649--58680	2	16.0	2	100	0	64	50	0	0	50	1.00
59032--59073	16	2.5	17	81	14	52	40	0	4	54	1.21
59309--59370	27	2.4	25	82	12	72	45	1	0	53	1.10
59309--59370	26	2.4	26	82	12	74	45	1	0	53	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60175--60213	18	2.2	18	100	0	78	41	0	28	30	1.57
60231--60296	22	3.0	22	80	12	82	46	1	0	51	1.10
60225--60300	11	6.8	12	78	13	74	48	1	0	50	1.09
61973--62001	14	2.1	14	100	0	58	51	0	0	48	1.00
62641--63026	196	2.0	198	80	5	451	39	11	10	39	1.76
63943--63988	23	2.0	23	86	0	65	19	32	26	21	1.97
67837--67890	21	2.6	21	100	0	108	24	16	29	29	1.97
67926--67967	19	2.2	19	91	0	66	21	23	11	42	1.86
68161--68193	5	6.8	5	89	6	50	3	36	21	39	1.69
68190--68232	6	7.2	6	94	0	77	0	18	46	34	1.50
68433--68541	20	5.6	20	69	14	84	38	26	20	14	1.91
68349--68566	77	2.8	79	89	4	318	38	24	16	19	1.93
68349--68566	41	5.5	41	86	6	315	38	24	16	19	1.93
68612--68705	22	4.4	22	75	10	97	37	24	18	20	1.94
68696--68773	20	3.8	20	75	8	86	38	21	20	19	1.94
68551--68935	207	1.9	207	97	0	734	37	22	21	19	1.94
68819--68912	22	4.4	22	78	8	113	38	24	18	19	1.93
68841--68932	41	2.2	42	84	9	118	41	23	18	16	1.90
70744--70839	2	46.5	2	75	10	77	38	4	4	53	1.40
70765--70839	30	2.5	30	100	0	150	36	5	5	53	1.47
70861--70894	16	2.1	16	100	0	68	64	5	5	23	1.38
72130--72200	26	2.7	25	73	18	63	63	0	5	30	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74383--74411	12	2.3	13	94	5	51	68	0	0	31	0.89
74505--74550	23	2.0	23	86	0	65	4	0	26	69	1.07
75091--75134	3	13.7	3	81	13	52	65	2	0	31	1.05
75140--75186	24	2.0	24	87	8	69	51	8	0	40	1.33
75147--75318	37	4.9	36	78	17	173	48	6	2	42	1.43
75132--75438	36	8.3	35	76	16	216	46	6	3	43	1.44
75269--75367	48	2.1	47	94	1	171	46	4	3	46	1.37
75234--75404	84	2.0	83	93	3	290	46	5	3	45	1.43
75312--75443	38	3.4	38	85	10	171	44	4	5	45	1.46
75598--75644	24	2.0	24	87	8	69	51	8	0	40	1.33
75587--76104	74	7.2	71	74	17	301	46	7	3	42	1.49
75655--75892	115	2.1	115	85	7	331	46	6	3	43	1.45
75622--75917	77	4.0	76	83	10	332	46	6	3	43	1.47
75605--76000	36	11.1	35	76	16	293	46	7	4	42	1.50
75885--75935	25	2.0	27	92	7	88	39	5	5	49	1.51
75892--75944	26	2.0	26	82	7	63	41	9	5	43	1.61
75918--76000	35	2.3	37	91	8	143	44	8	6	40	1.59
75857--75982	62	2.1	62	86	8	179	43	7	4	43	1.54
76026--76104	41	1.9	43	84	7	110	45	11	2	40	1.54
77260--77374	60	1.9	60	89	3	178	29	19	16	34	1.94
77703--77826	60	2.1	60	87	0	176	36	17	15	30	1.91
80084--80124	21	2.0	21	85	0	55	58	2	9	29	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94032--94114	2	42.0	2	97	2	159	49	0	0	50	1.00
95991--96029	2	20.5	2	89	10	64	51	0	0	48	1.00

Tables:   1

The End!