genome.fa.s5681.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005681.1 Hibiscus syriacus cultivar Beakdansim tig00013287_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  165246

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2082--2729	82	7.9	82	84	3	824	36	14	14	34	1.87
2693--2767	38	2.0	38	100	0	150	33	8	18	40	1.80
2614--2849	120	2.0	120	90	1	375	34	13	16	35	1.88
14676--14714	14	2.8	14	92	0	69	7	12	20	58	1.58
15827--15874	24	2.0	24	91	0	78	14	10	14	60	1.59
18505--18613	55	2.0	55	87	0	155	24	14	27	33	1.95
19635--19680	18	2.6	18	96	0	83	30	4	0	65	1.12
21130--21174	2	22.5	2	100	0	90	51	0	0	48	1.00
22170--22203	14	2.4	14	100	0	68	14	17	11	55	1.68
28725--28889	88	1.9	88	84	0	222	24	32	9	33	1.88
31084--31136	26	2.0	26	96	0	97	20	26	24	28	1.99
31798--31824	10	2.7	10	100	0	54	29	7	51	11	1.64
37254--37355	48	2.1	46	77	13	107	52	7	14	24	1.68
43563--43649	35	2.5	34	78	12	88	56	10	6	26	1.58
43870--43895	12	2.2	12	100	0	52	7	34	23	34	1.83
45793--46014	111	2.0	111	92	0	372	46	10	6	36	1.64
46138--46179	10	4.2	10	85	11	59	40	0	28	30	1.57
52056--52099	18	2.4	18	88	0	61	38	13	15	31	1.87
52744--52793	24	2.0	24	92	3	82	20	24	16	40	1.91
53277--53311	18	1.9	18	88	0	52	22	14	28	34	1.93
53964--54015	27	1.9	27	88	0	77	25	9	25	40	1.85
61758--61822	23	2.8	23	92	0	103	30	20	16	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63352--63418	21	3.2	21	78	0	71	26	0	23	49	1.51
63531--63594	11	5.9	11	70	17	53	39	1	1	57	1.17
74360--74393	15	2.3	15	100	0	68	17	20	20	41	1.91
76908--76941	16	2.1	16	100	0	68	17	17	41	23	1.90
84779--84818	12	3.6	12	83	12	50	45	5	0	50	1.23
84805--85146	22	15.6	22	88	1	490	40	0	10	48	1.41
85169--85228	31	1.9	31	89	0	93	43	8	5	43	1.56
85833--85877	2	23.0	2	88	4	65	44	0	4	51	1.21
86268--86313	18	2.5	19	93	6	78	43	19	13	23	1.86
92705--92743	19	2.1	19	95	0	69	20	38	15	25	1.92
98633--98688	22	2.7	21	83	10	62	30	23	17	28	1.97
100218--100261	21	2.1	21	83	8	54	9	34	15	40	1.79
101291--101329	19	2.1	19	95	0	69	20	38	15	25	1.92
101277--101437	65	2.5	65	83	3	200	30	24	16	28	1.96
101277--101457	64	2.8	64	80	2	202	29	25	17	28	1.97
105960--106122	79	2.1	79	79	0	173	33	18	23	23	1.97
118023--118064	20	2.0	20	86	4	57	47	19	2	30	1.62
119091--119122	10	3.2	10	100	0	64	50	9	9	31	1.66
120753--120795	21	2.0	21	100	0	86	41	4	0	53	1.21
120753--120819	21	3.0	23	85	6	77	44	4	1	49	1.31
121994--122039	20	2.3	21	85	7	60	39	19	21	19	1.93
122108--122180	20	3.7	20	75	0	83	23	19	19	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122249--122287	20	2.0	19	95	5	69	15	12	25	46	1.81
122253--122298	20	2.3	20	85	7	58	21	15	23	39	1.92
122429--122477	20	2.5	20	83	6	64	20	18	22	38	1.93
122450--122542	20	4.7	20	75	16	77	16	19	26	37	1.92
126294--126572	39	7.6	38	71	18	157	45	2	5	47	1.36
126319--126489	38	4.4	38	78	10	152	46	1	3	47	1.29
126462--126519	29	2.0	30	89	3	91	46	3	5	44	1.42
126425--126547	65	1.9	66	89	1	194	44	3	5	46	1.43
126482--126595	36	3.1	36	81	8	133	45	4	5	44	1.46
126378--126669	103	2.8	103	77	12	267	46	3	4	46	1.39
126588--126706	36	3.3	35	78	10	98	47	1	4	46	1.31
126359--126697	103	3.3	101	71	17	248	46	2	4	46	1.38
127829--127935	6	18.5	6	83	7	107	16	3	1	77	1.00
128011--128047	2	18.5	2	100	0	74	51	48	0	0	1.00
128047--128078	2	16.0	2	100	0	64	50	0	0	50	1.00
128076--128139	3	20.7	3	87	3	83	31	0	0	68	0.90
132850--132959	12	9.2	12	87	0	148	60	0	39	0	0.97
132850--132960	24	4.6	24	93	0	186	61	0	38	0	0.96
132853--132958	5	21.0	5	71	22	71	60	0	39	0	0.97
133762--133805	23	2.0	22	86	8	63	18	22	25	34	1.96
133771--133841	23	3.2	23	86	4	101	21	23	16	38	1.93
134351--134381	6	5.2	6	100	0	62	0	16	48	35	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136546--136570	12	2.1	12	100	0	50	16	24	16	44	1.86
144658--144717	31	1.9	31	100	0	120	35	16	25	23	1.95
145350--145426	31	2.5	30	87	4	109	27	27	11	33	1.91
148171--148215	2	23.5	2	91	8	76	53	0	0	46	1.00
148388--148449	19	3.6	19	66	33	59	41	0	1	56	1.09
148397--148493	30	3.2	30	94	2	169	42	2	0	55	1.11
148945--148976	3	10.7	3	100	0	64	68	0	0	31	0.90
163078--163122	23	1.9	24	86	4	65	57	0	6	35	1.25

Tables:   1

The End!