Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005682.1 Hibiscus syriacus cultivar Beakdansim tig00013288_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 134529
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Found at i:6654 original size:12 final size:12
Alignment explanation
Indices: 6633--6664 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
6623 AATGCAACAA
*
6633 AAAGAGAAAAAG
1 AAAGAAAAAAAG
6645 AAAGAAAAAAAG
1 AAAGAAAAAAAG
6657 AAAGAAAA
1 AAAGAAAA
6665 TACTCCTACA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (12 bp):
AAAGAAAAAAAG
Found at i:13976 original size:16 final size:16
Alignment explanation
Indices: 13955--13987 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
13945 TTCTGCCACC
13955 TATGTTAGAATGCAAA
1 TATGTTAGAATGCAAA
13971 TATGTTAGAATGCAAA
1 TATGTTAGAATGCAAA
13987 T
1 T
13988 GAGCTAACTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.42, C:0.06, G:0.18, T:0.33
Consensus pattern (16 bp):
TATGTTAGAATGCAAA
Found at i:16746 original size:23 final size:23
Alignment explanation
Indices: 16719--16792 Score: 57
Period size: 23 Copynumber: 3.3 Consensus size: 23
16709 CGCCAACTCT
16719 ATCACCATCCCATTACCATATCC
1 ATCACCATCCCATTACCATATCC
** ** *
16742 ATCA-C-TTTCA-CGCCA-ACTCT
1 ATCACCATCCCATTACCATA-TCC
*
16762 ATCACCATCCCATTACCATATTC
1 ATCACCATCCCATTACCATATCC
16785 ATCACCAT
1 ATCACCAT
16793 TTCTTAACCA
Statistics
Matches: 35, Mismatches: 11, Indels: 10
0.62 0.20 0.18
Matches are distributed among these distances:
19 1 0.03
20 9 0.26
21 4 0.11
22 4 0.11
23 16 0.46
24 1 0.03
ACGTcount: A:0.30, C:0.41, G:0.01, T:0.28
Consensus pattern (23 bp):
ATCACCATCCCATTACCATATCC
Found at i:16751 original size:43 final size:43
Alignment explanation
Indices: 16689--16789 Score: 184
Period size: 43 Copynumber: 2.3 Consensus size: 43
16679 TATTTCCTTC
16689 ACCATTATCCATCACTTTCACGCCAACTCTATCACCATCCCATT
1 ACCA-TATCCATCACTTTCACGCCAACTCTATCACCATCCCATT
16733 ACCATATCCATCACTTTCACGCCAACTCTATCACCATCCCATT
1 ACCATATCCATCACTTTCACGCCAACTCTATCACCATCCCATT
*
16776 ACCATATTCATCAC
1 ACCATATCCATCAC
16790 CATTTCTTAA
Statistics
Matches: 56, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
43 52 0.93
44 4 0.07
ACGTcount: A:0.29, C:0.41, G:0.02, T:0.29
Consensus pattern (43 bp):
ACCATATCCATCACTTTCACGCCAACTCTATCACCATCCCATT
Found at i:17597 original size:15 final size:15
Alignment explanation
Indices: 17561--17590 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
17551 GTGCTTCAAC
17561 TTTCTTT-CTTTTCT
1 TTTCTTTGCTTTTCT
17575 TTTCTTTGCTTTTCT
1 TTTCTTTGCTTTTCT
17590 T
1 T
17591 CTTTTTGAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.00, C:0.20, G:0.03, T:0.77
Consensus pattern (15 bp):
TTTCTTTGCTTTTCT
Found at i:20394 original size:16 final size:17
Alignment explanation
Indices: 20370--20421 Score: 63
Period size: 16 Copynumber: 3.1 Consensus size: 17
20360 ATTAAAGAGT
20370 TAGTTAGATTAATGAAC
1 TAGTTAGATTAATGAAC
* *
20387 TA-TTAGATGAATTAAC
1 TAGTTAGATTAATGAAC
20403 TAGTTTA-ATTAATGAAC
1 TAG-TTAGATTAATGAAC
20420 TA
1 TA
20422 AATTTATTGA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
16 14 0.48
17 12 0.41
18 3 0.10
ACGTcount: A:0.42, C:0.06, G:0.13, T:0.38
Consensus pattern (17 bp):
TAGTTAGATTAATGAAC
Found at i:20484 original size:17 final size:18
Alignment explanation
Indices: 20413--20491 Score: 65
Period size: 17 Copynumber: 4.5 Consensus size: 18
20403 TAGTTTAATT
* * *
20413 AATGAACTAAATTTATTG
1 AATGAACTAAATTCACTA
* *
20431 AATGAACTAAGATGCA-TG
1 AATGAACTAA-ATTCACTA
* *
20449 AATGAATTAACTT-ACTA
1 AATGAACTAAATTCACTA
20466 AATGAACTAAATTCA-TA
1 AATGAACTAAATTCACTA
20483 AATGAACTA
1 AATGAACTA
20492 CTTCCCTAAA
Statistics
Matches: 50, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
16 1 0.02
17 24 0.48
18 22 0.44
19 3 0.06
ACGTcount: A:0.48, C:0.10, G:0.11, T:0.30
Consensus pattern (18 bp):
AATGAACTAAATTCACTA
Found at i:20501 original size:34 final size:35
Alignment explanation
Indices: 20413--20521 Score: 89
Period size: 34 Copynumber: 3.1 Consensus size: 35
20403 TAGTTTAATT
* * * *
20413 AATGAACTAAATTTATTGAATGAACTAAGATGCATG
1 AATGAACT-AACTTACTAAATGAACTAAGATGCATA
* *
20449 AATGAATTAACTTACTAAATGAACTAA-ATTCATA
1 AATGAACTAACTTACTAAATGAACTAAGATGCATA
* * * *
20483 AATGAACT-ACTTCCCTAAATTAACT-AGAAGAATA
1 AATGAACTAACTT-ACTAAATGAACTAAGATGCATA
20517 AATGA
1 AATGA
20522 GATGTATGTT
Statistics
Matches: 59, Mismatches: 12, Indels: 6
0.77 0.16 0.08
Matches are distributed among these distances:
33 5 0.08
34 31 0.53
35 16 0.27
36 7 0.12
ACGTcount: A:0.48, C:0.12, G:0.11, T:0.29
Consensus pattern (35 bp):
AATGAACTAACTTACTAAATGAACTAAGATGCATA
Found at i:21428 original size:19 final size:20
Alignment explanation
Indices: 21404--21446 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
21394 TTTTTGTTAT
*
21404 GATACCCAAG-GTAGGTATC
1 GATACCCAAGAGTAGATATC
*
21423 GATACCCAAGAGTCGATATC
1 GATACCCAAGAGTAGATATC
21443 GATA
1 GATA
21447 TTGTGAGGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 10 0.48
20 11 0.52
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (20 bp):
GATACCCAAGAGTAGATATC
Found at i:23019 original size:28 final size:28
Alignment explanation
Indices: 22950--23024 Score: 107
Period size: 28 Copynumber: 2.7 Consensus size: 28
22940 CCAACAGTAA
*
22950 AATTTGATGATATATGTTTTCTATGTGT
1 AATTTGATGATATATGTTTTCTATGTAT
*
22978 GA-TTGATGAATATATGTTTTCTATGTAT
1 AATTTGATG-ATATATGTTTTCTATGTAT
*
23006 AATTTGATGCTATATGTTT
1 AATTTGATGATATATGTTT
23025 AATTTTACGC
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
27 6 0.15
28 29 0.71
29 6 0.15
ACGTcount: A:0.27, C:0.04, G:0.17, T:0.52
Consensus pattern (28 bp):
AATTTGATGATATATGTTTTCTATGTAT
Found at i:27898 original size:20 final size:20
Alignment explanation
Indices: 27875--27920 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
27865 ATGTGCTAAA
27875 CTTGAACAAAATGTATA-ATG
1 CTTGAACAAAATGT-TAGATG
**
27895 CTTGAACATGATGTTAGATG
1 CTTGAACAAAATGTTAGATG
27915 CTTGAA
1 CTTGAA
27921 TTATAAGTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 2 0.09
20 21 0.91
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.33
Consensus pattern (20 bp):
CTTGAACAAAATGTTAGATG
Found at i:31915 original size:234 final size:234
Alignment explanation
Indices: 31501--31969 Score: 911
Period size: 234 Copynumber: 2.0 Consensus size: 234
31491 TATGAAACCA
*
31501 ATTTCCAAGATCAGTCGAAAAAAACTTATTTTTTTTTATAAAATAAGAGAATTTTTTTATAAAAT
1 ATTTCCAAGATCAGTCGAAAAAAAATTATTTTTTTTTATAAAATAAGAGAATTTTTTTATAAAAT
31566 TAAGATGATTATATAATAATATAAAATTTAAAATGTATTTAATTATTTAATAATAAATAATTATT
66 TAAGATGATTATATAATAATATAAAATTTAAAATGTATTTAATTATTTAATAATAAATAATTATT
31631 CACTCTATTGTAGTTATAACGTTTTTTTTAATTATTAAGATAAATTGTTTGTGCTTAGAAAAGAA
131 CACTCTATTGTAGTTATAACGTTTTTTTTAATTATTAAGATAAATTGTTTGTGCTTAGAAAAGAA
31696 AAGAGTTTGCTTTCTTCTTTTTTTTTTTGAGAGAACGCC
196 AAGAGTTTGCTTTCTTCTTTTTTTTTTTGAGAGAACGCC
*
31735 ATTTTCAAGATCAGTCGAAAAAAAATTATTTTTTTTTATAAAATAAGAGAATTTTTTTATAAAAT
1 ATTTCCAAGATCAGTCGAAAAAAAATTATTTTTTTTTATAAAATAAGAGAATTTTTTTATAAAAT
*
31800 TAAGATGATTATATAATAATATAAATTTTAAAATGTATTTAATTATTTAATAATAAATAATTATT
66 TAAGATGATTATATAATAATATAAAATTTAAAATGTATTTAATTATTTAATAATAAATAATTATT
31865 CACTCTATTGTAGTTATAACGTTTTTTTTAATTATTAAGATAAATTGTTTGTGCTTAGAAAAGAA
131 CACTCTATTGTAGTTATAACGTTTTTTTTAATTATTAAGATAAATTGTTTGTGCTTAGAAAAGAA
31930 AAGAGTTTGCTTTCTTCTTTTTTTTTTTGAGAGAACGCC
196 AAGAGTTTGCTTTCTTCTTTTTTTTTTTGAGAGAACGCC
31969 A
1 A
31970 CTCCACGTGT
Statistics
Matches: 232, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
234 232 1.00
ACGTcount: A:0.39, C:0.06, G:0.10, T:0.45
Consensus pattern (234 bp):
ATTTCCAAGATCAGTCGAAAAAAAATTATTTTTTTTTATAAAATAAGAGAATTTTTTTATAAAAT
TAAGATGATTATATAATAATATAAAATTTAAAATGTATTTAATTATTTAATAATAAATAATTATT
CACTCTATTGTAGTTATAACGTTTTTTTTAATTATTAAGATAAATTGTTTGTGCTTAGAAAAGAA
AAGAGTTTGCTTTCTTCTTTTTTTTTTTGAGAGAACGCC
Found at i:45079 original size:15 final size:15
Alignment explanation
Indices: 45061--45103 Score: 86
Period size: 15 Copynumber: 2.9 Consensus size: 15
45051 ATTTTTGTCT
45061 TTAAAATTGTTTTTC
1 TTAAAATTGTTTTTC
45076 TTAAAATTGTTTTTC
1 TTAAAATTGTTTTTC
45091 TTAAAATTGTTTT
1 TTAAAATTGTTTT
45104 AACGATATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.28, C:0.05, G:0.07, T:0.60
Consensus pattern (15 bp):
TTAAAATTGTTTTTC
Found at i:45353 original size:14 final size:15
Alignment explanation
Indices: 45320--45353 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
45310 AGAGGGCAAC
45320 TTTTTCTTAAAATTG
1 TTTTTCTTAAAATTG
45335 TTTTTCTTAAAATTG
1 TTTTTCTTAAAATTG
45350 TTTT
1 TTTT
45354 AACGATATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.24, C:0.06, G:0.06, T:0.65
Consensus pattern (15 bp):
TTTTTCTTAAAATTG
Found at i:45580 original size:265 final size:250
Alignment explanation
Indices: 45070--45584 Score: 895
Period size: 250 Copynumber: 2.0 Consensus size: 250
45060 TTTAAAATTG
45070 TTTTTCTTAAAATTGTTTTTCTTAAAATTGTTTTAACGATATTTTTAGGTATTTGACCTACCTAA
1 TTTTTCTTAAAATTGTTTTTCTTAAAATTGTTTTAACGATATTTTTAGGTATTTGACCTACCTAA
45135 CCCAAAGATCGATGGCGACTTCAAACTCCAAATTAATTTAAAACCCTAATTTTTTCAAATAAAGT
66 CCCAAAGATCGATGGCGACTTCAAACTCCAAATTAATTTAAAACCCTAATTTTTTCAAATAAAGT
45200 AATAATTATTTTTAATTCAATTATTTCGTTTTAAAATTGTTATGACAACCCTCAAATAGAAAAAG
131 AATAATTATTTTTAATTCAATTATTTCGTTTTAAAATTGTTATGACAACCCTCAAATAGAAAAAG
45265 CAGATTTGGACATCTTAAAGAAAGGTAAACAAGACTGAAGCACCAAGAGGGCAAC
196 CAGATTTGGACATCTTAAAGAAAGGTAAACAAGACTGAAGCACCAAGAGGGCAAC
45320 TTTTTCTTAAAATTGTTTTTCTTAAAATTGTTTTAACGATATTTTTAGGTATTTGACCTACCTAA
1 TTTTTCTTAAAATTGTTTTTCTTAAAATTGTTTTAACGATATTTTTAGGTATTTGACCTACCTAA
45385 CCCAAAGATCGATGGCGACTTCAAACTCCAAATTAATTTAAAACCCTAATTTTTTCAAAATAAAG
66 CCCAAAGATCGATGGCGACTTCAAACTCCAAATTAATTTAAAACCCTAATTTTTTC-AAATAAAG
45450 TAATAATTATTTTTTAATTCAATTATTTTCGTTTTAAAATTGTTATGACAACCCTCAAATAGAAA
130 TAATAATTA-TTTTTAATTCAATTA-TTTCGTTTTAAAATTGTTATGACAACCCTCAAATAGAAA
45515 AAGCAGAGTTGGACATCGAATTGACATTCTTAAAGAAAGGTAAACAAGACTGAAGCACCAAGAGG
193 AAGCAGA-TT-----T-G----GACA-TCTTAAAGAAAGGTAAACAAGACTGAAGCACCAAGAGG
45580 GCAAC
246 GCAAC
45585 CTGAAGGGCA
Statistics
Matches: 250, Mismatches: 0, Indels: 15
0.94 0.00 0.06
Matches are distributed among these distances:
250 121 0.48
251 17 0.07
252 15 0.06
253 46 0.18
254 2 0.01
259 1 0.00
260 1 0.00
264 4 0.02
265 43 0.17
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (250 bp):
TTTTTCTTAAAATTGTTTTTCTTAAAATTGTTTTAACGATATTTTTAGGTATTTGACCTACCTAA
CCCAAAGATCGATGGCGACTTCAAACTCCAAATTAATTTAAAACCCTAATTTTTTCAAATAAAGT
AATAATTATTTTTAATTCAATTATTTCGTTTTAAAATTGTTATGACAACCCTCAAATAGAAAAAG
CAGATTTGGACATCTTAAAGAAAGGTAAACAAGACTGAAGCACCAAGAGGGCAAC
Found at i:45817 original size:60 final size:60
Alignment explanation
Indices: 45719--45836 Score: 155
Period size: 60 Copynumber: 2.0 Consensus size: 60
45709 ATATATTTGA
* * *
45719 TACCCGAACTAGACATCTTTTCCTAAGTTAATACCTAAAGATTTTTTGCTCCCAAGTTAG
1 TACCCGAACTAGACATCTTCTACTAAGTTAATACCTAAAAATTTTTTGCTCCCAAGTTAG
* * ** * *
45779 TACCTGAACTAGGCATCTTCTACTAAGTTGGTATCTAAAAATTTTTTGTTCCCAAGTT
1 TACCCGAACTAGACATCTTCTACTAAGTTAATACCTAAAAATTTTTTGCTCCCAAGTT
45837 GGTGTCTAAA
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
60 49 1.00
ACGTcount: A:0.29, C:0.21, G:0.13, T:0.37
Consensus pattern (60 bp):
TACCCGAACTAGACATCTTCTACTAAGTTAATACCTAAAAATTTTTTGCTCCCAAGTTAG
Found at i:46016 original size:3 final size:3
Alignment explanation
Indices: 46002--46048 Score: 60
Period size: 3 Copynumber: 16.0 Consensus size: 3
45992 GGTCTTTTTA
* * *
46002 ATT ATT -TT ATT ATT ATT ATT ATC ATT ATT AAT ACT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
46049 TATTTATTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
2 2 0.05
3 36 0.95
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:46041 original size:24 final size:24
Alignment explanation
Indices: 46012--46076 Score: 80
Period size: 26 Copynumber: 2.7 Consensus size: 24
46002 ATTATTTTAT
46012 TATTATTATTATCATTATTAATAC
1 TATTATTATTATCATTATTAATAC
*
46036 TATTATTATTATTTATTTATTAATAC
1 TATTATTATTA-TCA-TTATTAATAC
46062 TAATTATT-TTA-CATT
1 T-ATTATTATTATCATT
46077 TTGCAGGACT
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
23 2 0.06
24 12 0.33
25 2 0.06
26 14 0.39
27 6 0.17
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.58
Consensus pattern (24 bp):
TATTATTATTATCATTATTAATAC
Found at i:46077 original size:24 final size:25
Alignment explanation
Indices: 46012--46077 Score: 84
Period size: 24 Copynumber: 2.7 Consensus size: 25
46002 ATTATTTTAT
46012 TATTATTATTATCA-TTATTAATAC
1 TATTATTATTATCATTTATTAATAC
*
46036 TATTATTATTATTTATTTATTAATAC
1 TATTATTATTA-TCATTTATTAATAC
46062 TAATTATT-TTA-CATTT
1 T-ATTATTATTATCATTT
46078 TGCAGGACTA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
24 15 0.41
25 2 0.05
26 14 0.38
27 6 0.16
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59
Consensus pattern (25 bp):
TATTATTATTATCATTTATTAATAC
Found at i:46996 original size:15 final size:15
Alignment explanation
Indices: 46976--47005 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
46966 CCTTCGCGAT
46976 GGAGGAGAGGAAAGG
1 GGAGGAGAGGAAAGG
46991 GGAGGAGAGGAAAGG
1 GGAGGAGAGGAAAGG
47006 AAAGGGGAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.60, T:0.00
Consensus pattern (15 bp):
GGAGGAGAGGAAAGG
Found at i:47006 original size:20 final size:20
Alignment explanation
Indices: 46977--47024 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
46967 CTTCGCGATG
*
46977 GAGGAGAGGAAAGGGGAGGA
1 GAGGAAAGGAAAGGGGAGGA
46997 GAGGAAAGGAAAGGGGAGGA
1 GAGGAAAGGAAAGGGGAGGA
47017 GAGGAAAG
1 GAGGAAAG
47025 AGAATGATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.44, C:0.00, G:0.56, T:0.00
Consensus pattern (20 bp):
GAGGAAAGGAAAGGGGAGGA
Found at i:47015 original size:15 final size:15
Alignment explanation
Indices: 46978--47024 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
46968 TTCGCGATGG
**
46978 AGGAGAGGAAAGGGG
1 AGGAGAGGAAAGGAA
46993 AGGAGAGGAAAGGAA
1 AGGAGAGGAAAGGAA
* *
47008 AGGGGAGGAGAGGAA
1 AGGAGAGGAAAGGAA
47023 AG
1 AG
47025 AGAATGATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.45, C:0.00, G:0.55, T:0.00
Consensus pattern (15 bp):
AGGAGAGGAAAGGAA
Found at i:47714 original size:18 final size:19
Alignment explanation
Indices: 47682--47719 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
47672 TTTTTGCACA
*
47682 AATATTTTTATTTTTATTT
1 AATATTTTTACTTTTATTT
*
47701 AATATTTTT-CTTTTCTTT
1 AATATTTTTACTTTTATTT
47719 A
1 A
47720 CCTTTAAGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (19 bp):
AATATTTTTACTTTTATTT
Found at i:47944 original size:12 final size:12
Alignment explanation
Indices: 47912--47944 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
47902 TCCGAATATT
47912 TATATAA-TTTA
1 TATATAATTTTA
47923 -ATATAATTTTA
1 TATATAATTTTA
47934 TATATAATTTT
1 TATATAATTTT
47945 TTTAAAAACT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 6 0.30
11 4 0.20
12 10 0.50
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (12 bp):
TATATAATTTTA
Found at i:48920 original size:14 final size:14
Alignment explanation
Indices: 48901--48929 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
48891 TCATATGTTT
48901 GTATTTACCTCTTA
1 GTATTTACCTCTTA
48915 GTATTTACCTCTTA
1 GTATTTACCTCTTA
48929 G
1 G
48930 GATATGCTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.21, G:0.10, T:0.48
Consensus pattern (14 bp):
GTATTTACCTCTTA
Found at i:56203 original size:20 final size:20
Alignment explanation
Indices: 56178--56221 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
56168 CGATATTTTT
56178 AGTATCAATACTATTCATAC
1 AGTATCAATACTATTCATAC
56198 AGTATCAATACTATTCATAC
1 AGTATCAATACTATTCATAC
56218 AGTA
1 AGTA
56222 CTATTCATAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.41, C:0.18, G:0.07, T:0.34
Consensus pattern (20 bp):
AGTATCAATACTATTCATAC
Found at i:56225 original size:14 final size:14
Alignment explanation
Indices: 56206--56232 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
56196 ACAGTATCAA
56206 TACTATTCATACAG
1 TACTATTCATACAG
56220 TACTATTCATACA
1 TACTATTCATACA
56233 ATATTTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.22, G:0.04, T:0.37
Consensus pattern (14 bp):
TACTATTCATACAG
Found at i:59567 original size:20 final size:20
Alignment explanation
Indices: 59544--59639 Score: 174
Period size: 20 Copynumber: 4.8 Consensus size: 20
59534 CTTGATTTTA
*
59544 CTGTAGCAGTATCGATACTA
1 CTGTAGCAGTATCGATACTT
59564 CTGTAGCAGTATCGATACTT
1 CTGTAGCAGTATCGATACTT
59584 CTGTAGCAGTATCGATACTT
1 CTGTAGCAGTATCGATACTT
*
59604 CTGTAGCAGTATTGATACTT
1 CTGTAGCAGTATCGATACTT
59624 CTGTAGCAGTATCGAT
1 CTGTAGCAGTATCGAT
59640 GCCCATTTTA
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 73 1.00
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (20 bp):
CTGTAGCAGTATCGATACTT
Found at i:59740 original size:20 final size:20
Alignment explanation
Indices: 59698--59740 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
59688 AGTCACACAT
* * *
59698 TATCGATATTATTCATATAG
1 TATCGATACTATCCATACAG
*
59718 TATCGATACTATCCATACGG
1 TATCGATACTATCCATACAG
59738 TAT
1 TAT
59741 TATTCATATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.40
Consensus pattern (20 bp):
TATCGATACTATCCATACAG
Found at i:62082 original size:54 final size:54
Alignment explanation
Indices: 62000--62640 Score: 896
Period size: 54 Copynumber: 11.9 Consensus size: 54
61990 TTTATTAAGA
* * * * * * **
62000 TGCACACGTAGTGCCTATACGGTTATTCATTAACCTAT-ACTGAATTTAATGGGT
1 TGCACACATAGTGCATGTACGGTTGTTCATCAACATATGA-TGAATTTCGTGGGT
*
62054 TGCACACATAGTGCATGTACGGTTATTCATCAACATATGATGAATTTCGTGGGT
1 TGCACACATAGTGCATGTACGGTTGTTCATCAACATATGATGAATTTCGTGGGT
* * * **
62108 TGCACACATAGTGTC-TGTACGGTTATTTATCAACATATGATAAATCCCGTGGGT
1 TGCACACATAGTG-CATGTACGGTTGTTCATCAACATATGATGAATTTCGTGGGT
62162 TGCACACATAGTGCATGTACGGTTGTTCATCAACATATGATGAATTTCGTGGGT
1 TGCACACATAGTGCATGTACGGTTGTTCATCAACATATGATGAATTTCGTGGGT
* * * **
62216 TGCATACATAGTTCTTGTACGGTTGTTCATCAACATATGATGAATTTCGCAGGT
1 TGCACACATAGTGCATGTACGGTTGTTCATCAACATATGATGAATTTCGTGGGT
* *
62270 TGCACACATAGTGCCTGTACGGTTGTTCATCAACATATGATGAATTAT-GTGGGC
1 TGCACACATAGTGCATGTACGGTTGTTCATCAACATATGATGAATT-TCGTGGGT
* * * *
62324 TGCATACATAGTGCTTGTACGGTTGTTCATCAACATATGATGAATTCCATGGGT
1 TGCACACATAGTGCATGTACGGTTGTTCATCAACATATGATGAATTTCGTGGGT
*
62378 TGCACACATAGTGCATGTACGGTTGTTCATCAACATAGGATGAA-TTCTGTGGGT
1 TGCACACATAGTGCATGTACGGTTGTTCATCAACATATGATGAATTTC-GTGGGT
* * *
62432 TGCACACATAGTGCCTGTACGGTTGTTCATTAACATATGATGAATTTCGTGGCT
1 TGCACACATAGTGCATGTACGGTTGTTCATCAACATATGATGAATTTCGTGGGT
* *
62486 TGCACACATAGTGCATGTACGGTTGTTCATCAACATATGTTGAATTTCATGGGT
1 TGCACACATAGTGCATGTACGGTTGTTCATCAACATATGATGAATTTCGTGGGT
*
62540 TGCACACATAGTGCATGTACGGTTGTTCATCAACATATGATGAATTAT-ATGGGTT
1 TGCACACATAGTGCATGTACGGTTGTTCATCAACATATGATGAATT-TCGTGGG-T
*
62595 TGCACACATAGTGCTTGTACGGTTGTTCATCAACATATGATGAATT
1 TGCACACATAGTGCATGTACGGTTGTTCATCAACATATGATGAATT
62641 CCTGGGTGTT
Statistics
Matches: 530, Mismatches: 48, Indels: 17
0.89 0.08 0.03
Matches are distributed among these distances:
53 3 0.01
54 474 0.89
55 53 0.10
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (54 bp):
TGCACACATAGTGCATGTACGGTTGTTCATCAACATATGATGAATTTCGTGGGT
Found at i:63043 original size:20 final size:20
Alignment explanation
Indices: 62978--63046 Score: 66
Period size: 20 Copynumber: 3.4 Consensus size: 20
62968 CTCAATAGTG
*
62978 TCGATACCCCTACCATGGTA
1 TCGATACCCTTACCATGGTA
** * * *
62998 TTAATACTTCTATACTATGTTA
1 TCGATAC-CCT-TACCATGGTA
63020 TCGATACCCTTACCATGGTA
1 TCGATACCCTTACCATGGTA
63040 TCGATAC
1 TCGATAC
63047 AACTATATTA
Statistics
Matches: 36, Mismatches: 11, Indels: 4
0.71 0.22 0.08
Matches are distributed among these distances:
20 20 0.56
21 3 0.08
22 13 0.36
ACGTcount: A:0.28, C:0.26, G:0.12, T:0.35
Consensus pattern (20 bp):
TCGATACCCTTACCATGGTA
Found at i:63053 original size:42 final size:42
Alignment explanation
Indices: 62978--63058 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
62968 CTCAATAGTG
* **
62978 TCGATACCCCTACCATGGTATTAATACTTCTATACTATGTTA
1 TCGATACCCCTACCATGGTATCAATACAACTATACTATGTTA
* * *
63020 TCGATACCCTTACCATGGTATCGATACAACTATATTATG
1 TCGATACCCCTACCATGGTATCAATACAACTATACTATG
63059 GTACTGATAC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.30, C:0.23, G:0.11, T:0.36
Consensus pattern (42 bp):
TCGATACCCCTACCATGGTATCAATACAACTATACTATGTTA
Found at i:68784 original size:81 final size:81
Alignment explanation
Indices: 68645--69303 Score: 901
Period size: 81 Copynumber: 8.1 Consensus size: 81
68635 GTGTTAAAAT
* * * * * * *
68645 AAAGATTAATTACCTAGTTTTACAATTGACTGAAAGGTGTCAATCATGCCAGTTAGATGAACGGT
1 AAAGATTAATTTCCTAGTTGTGCATTTGACAGAAATGTGTCAATCATGCCAGTTAGATGAAAGGT
68710 TAAATACCTTTGAGTA
66 TAAATACCTTTGAGTA
* * * * *
68726 AAATATTAATTTCCTAGCTGTGTATTTGATAGAAATGTGTCAATCATGCCAGTTAGATGAAAGAT
1 AAAGATTAATTTCCTAGTTGTGCATTTGACAGAAATGTGTCAATCATGCCAGTTAGATGAAAGGT
* *
68791 TACATACCTTTGACTA
66 TAAATACCTTTGAGTA
* * * *
68807 AAAGATTAATTGCCTAGTTGTGCATTTGACAGAAAGGTGTCAATCATGCTAGTTAGATGAAAGAT
1 AAAGATTAATTTCCTAGTTGTGCATTTGACAGAAATGTGTCAATCATGCCAGTTAGATGAAAGGT
68872 TAAATACCTTTGAGTA
66 TAAATACCTTTGAGTA
* * * *
68888 AAAGATTAATTGCCCAGATGTGCATTTGCCAGAAA-GATGTCAATCATGCCAGTTAGATGAAAGG
1 AAAGATTAATTTCCTAGTTGTGCATTTGACAGAAATG-TGTCAATCATGCCAGTTAGATGAAAGG
*
68952 TTAAATATCTTTGAGTA
65 TTAAATACCTTTGAGTA
* ** *
68969 AAAGATTAATTGCCTAGTTGTGCATTTGTTAGAAATGTGTCATTCATGCCAGTTAGATGAAAGGT
1 AAAGATTAATTTCCTAGTTGTGCATTTGACAGAAATGTGTCAATCATGCCAGTTAGATGAAAGGT
69034 TAAATACCTTTGAGTA
66 TAAATACCTTTGAGTA
* * * * *
69050 AAAGATTAATTGTCTTA-CTGTGCATTTGAAAGAAATGTGTCAATCATGCTAGTTAGATCAAAGG
1 AAAGATTAATT-TCCTAGTTGTGCATTTGACAGAAATGTGTCAATCATGCCAGTTAGATGAAAGG
*
69114 CTAAATACCTTTGAGTA
65 TTAAATACCTTTGAGTA
* *
69131 AAAGATTAATTTCCTAGTTGTGCATTTGACAAAAATGTGTCAATCTTGCCAGTTAGATGAAAGGT
1 AAAGATTAATTTCCTAGTTGTGCATTTGACAGAAATGTGTCAATCATGCCAGTTAGATGAAAGGT
69196 TAAATACCTTTGAGTA
66 TAAATACCTTTGAGTA
* * * * *
69212 AAAGATTAATTGT-CTAGTTTTGCATTTGACAAAAAGGTGTCAATCATGGCAGTTAGATAAAAGG
1 AAAGATTAATT-TCCTAGTTGTGCATTTGACAGAAATGTGTCAATCATGCCAGTTAGATGAAAGG
69276 TTAAATACCTTTGAGTA
65 TTAAATACCTTTGAGTA
*
69293 AAAGACTAATT
1 AAAGATTAATT
69304 GCTTAACAAT
Statistics
Matches: 515, Mismatches: 58, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
80 5 0.01
81 505 0.98
82 5 0.01
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (81 bp):
AAAGATTAATTTCCTAGTTGTGCATTTGACAGAAATGTGTCAATCATGCCAGTTAGATGAAAGGT
TAAATACCTTTGAGTA
Found at i:75310 original size:94 final size:95
Alignment explanation
Indices: 75163--75340 Score: 243
Period size: 94 Copynumber: 1.9 Consensus size: 95
75153 TACAAAAAGG
* * * *
75163 AAAGTATCGATACCATGGATTCTAGAATGTTGAAATGGTATCGATACTGAAAGGGAATATC-AGT
1 AAAGTATCGATACCATGGATTCCAGAATGTAGAAATGATATCGATACTAAAAGGGAATATCGA-T
* * *
75227 ACCATAGTATAGAAGTATCGGTACTAGGAGA
65 ACCACAATATAGAACTATCGGTACTAGGAGA
* * *
75258 AAAGTATCGGTACCATGGA-TCCATAATGTAGAAATGATATCGATACTAAAAGGGAGTATCGATA
1 AAAGTATCGATACCATGGATTCCAGAATGTAGAAATGATATCGATACTAAAAGGGAATATCGATA
75322 CCACAATATAGAACTATCG
66 CCACAATATAGAACTATCG
75341 ATACCACAAT
Statistics
Matches: 72, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
94 53 0.74
95 19 0.26
ACGTcount: A:0.39, C:0.13, G:0.22, T:0.25
Consensus pattern (95 bp):
AAAGTATCGATACCATGGATTCCAGAATGTAGAAATGATATCGATACTAAAAGGGAATATCGATA
CCACAATATAGAACTATCGGTACTAGGAGA
Found at i:75342 original size:22 final size:22
Alignment explanation
Indices: 75314--75368 Score: 110
Period size: 22 Copynumber: 2.5 Consensus size: 22
75304 TAAAAGGGAG
75314 TATCGATACCACAATATAGAAC
1 TATCGATACCACAATATAGAAC
75336 TATCGATACCACAATATAGAAC
1 TATCGATACCACAATATAGAAC
75358 TATCGATACCA
1 TATCGATACCA
75369 TGGTAGGGGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.44, C:0.24, G:0.09, T:0.24
Consensus pattern (22 bp):
TATCGATACCACAATATAGAAC
Found at i:75954 original size:81 final size:80
Alignment explanation
Indices: 75770--76513 Score: 1058
Period size: 81 Copynumber: 9.2 Consensus size: 80
75760 TGTGTTAAAA
* * * * *
75770 TAAAAGATTAATTGTCTAGCTATGCATTTGACAGAAATGTGTCATTCATGCTAGTTAGAT-AAAT
1 TAAAAGATTAATTG-CTAGCTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
75834 GTTAAATACCTTTGAG
65 GTTAAATACCTTTGAG
* *
75850 TAAATGATTAATTGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAA
1 TAAAAGATTAATTG-CTAGCTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
* *
75915 GCTAAATAACTTTGAG
65 GTTAAATACCTTTGAG
* *
75931 TAAAAGATTAATTGCATAGCTGTGCATTTGACAGAAAGATGTCAATCATGCAAGTTAGATGAAAG
1 TAAAAGATTAATTGC-TAGCTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
*
75996 GTTAAATACCTTTGAA
65 GTTAAATACCTTTGAG
* *
76012 TAAAAGATTAATTGCGTAGCTGTGCATTTGATAGAAAGGTGTTAATCATGCCAGTTAGATGAAAG
1 TAAAAGATTAATTGC-TAGCTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
76077 GTTAAATACCTTTGAG
65 GTTAAATACCTTTGAG
* * * * *
76093 TAAAAGATTAATTGCATACCTGTGAATTTGACAGAAATGTGTCAATCATACCAGCTAGATGAAAG
1 TAAAAGATTAATTGC-TAGCTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
*
76158 GTTAAATGCCTTTGAG
65 GTTAAATACCTTTGAG
* * * *
76174 TAAAAGATTAATTGCCTAGTTGTGCATTTGACAGAAAGGTTTCAATCATGCCAGTTTGATGAAAT
1 TAAAAGATTAATTG-CTAGCTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
76239 GTTAAATACCTTTGAG
65 GTTAAATACCTTTGAG
* * *
76255 TAAAATATTAATTACCTAGCTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAT
1 TAAAAGATTAATT-GCTAGCTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
*
76320 GTTAAATACCGTTGAG
65 GTTAAATACCTTTGAG
* * * *
76336 TAAAAGATTAATTGTCTAGCTATGCATTTGACAGAAATGTGTCAATGATGCTAGTTAGATGAAAG
1 TAAAAGATTAATTG-CTAGCTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
*
76401 TTTAAATACCTTTGAG
65 GTTAAATACCTTTGAG
* * *
76417 TAAAAGATTAATTGTCTAGCTATGCATTTGATAGAAAGGTGTCAATCATGGCAGTTAGATGAAAG
1 TAAAAGATTAATTG-CTAGCTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
76482 GTTAAATACCTTTGAG
65 GTTAAATACCTTTGAG
* *
76498 TAAAAGACTAAATGCT
1 TAAAAGATTAATTGCT
76514 TAAAGTGCAT
Statistics
Matches: 595, Mismatches: 64, Indels: 10
0.89 0.10 0.01
Matches are distributed among these distances:
80 57 0.10
81 537 0.90
82 1 0.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (80 bp):
TAAAAGATTAATTGCTAGCTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGG
TTAAATACCTTTGAG
Found at i:80589 original size:49 final size:49
Alignment explanation
Indices: 80513--80689 Score: 273
Period size: 49 Copynumber: 3.6 Consensus size: 49
80503 TTCCCAATGT
* *
80513 ATTTAACTTTCATTAGTGGCACATTTTATGTCGAAATGTACCTTTATGC
1 ATTTAACTTTCATTAGTGGCACCTTTTATGTCGAAATGCACCTTTATGC
*
80562 ATTTAACTTTCATTTGTGGCACCTTTTATGTCGAAATGCACCTTTATGC
1 ATTTAACTTTCATTAGTGGCACCTTTTATGTCGAAATGCACCTTTATGC
* * * * *
80611 ATTTAACTTTCATTTGTGACACCTTTTATGCCAAAATGCACCGTTATGC
1 ATTTAACTTTCATTAGTGGCACCTTTTATGTCGAAATGCACCTTTATGC
*
80660 ATTTAACTTTCATTAGTGGAACCTTTTATG
1 ATTTAACTTTCATTAGTGGCACCTTTTATG
80690 CCAAAATACA
Statistics
Matches: 118, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 118 1.00
ACGTcount: A:0.25, C:0.19, G:0.14, T:0.42
Consensus pattern (49 bp):
ATTTAACTTTCATTAGTGGCACCTTTTATGTCGAAATGCACCTTTATGC
Found at i:81009 original size:17 final size:17
Alignment explanation
Indices: 80989--81058 Score: 79
Period size: 17 Copynumber: 4.1 Consensus size: 17
80979 TTTAACTAAG
*
80989 TAGTTCATTTATTAAAC
1 TAGTTCATTCATTAAAC
81006 TAGTTCATTCATTAAAC
1 TAGTTCATTCATTAAAC
* * *
81023 TA-TCTTATTCATCAAAA
1 TAGT-TCATTCATTAAAC
*
81040 TAGTTCATTTATTAAAC
1 TAGTTCATTCATTAAAC
81057 TA
1 TA
81059 TATTTTAATT
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
16 1 0.02
17 41 0.95
18 1 0.02
ACGTcount: A:0.37, C:0.14, G:0.04, T:0.44
Consensus pattern (17 bp):
TAGTTCATTCATTAAAC
Found at i:84859 original size:17 final size:17
Alignment explanation
Indices: 84839--84905 Score: 89
Period size: 17 Copynumber: 3.9 Consensus size: 17
84829 TTTAACTAAG
*
84839 TAGTTCATTGATTAAAA
1 TAGTTCATTCATTAAAA
*
84856 TAGTTCATTCATTAAAC
1 TAGTTCATTCATTAAAA
* *
84873 TAGCTCATTCATCAAAA
1 TAGTTCATTCATTAAAA
*
84890 TAGTTCATTTATTAAA
1 TAGTTCATTCATTAAA
84906 CTATATCTTA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 42 1.00
ACGTcount: A:0.39, C:0.13, G:0.07, T:0.40
Consensus pattern (17 bp):
TAGTTCATTCATTAAAA
Found at i:84863 original size:34 final size:35
Alignment explanation
Indices: 84825--84908 Score: 84
Period size: 34 Copynumber: 2.5 Consensus size: 35
84815 AGCTATGCAC
* * * *
84825 TTCATTTAACT-AAGTAGTTCATTGATTAAAATAG
1 TTCATTTAACTAAACTAGCTCATTCATCAAAATAG
* *
84859 TTCA-TTCATTAAACTAGCTCATTCATCAAAATAG
1 TTCATTTAACTAAACTAGCTCATTCATCAAAATAG
*
84893 TTCATTT-ATTAAACTA
1 TTCATTTAACTAAACTA
84909 TATCTTATTT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
33 4 0.10
34 36 0.86
35 2 0.05
ACGTcount: A:0.38, C:0.14, G:0.07, T:0.40
Consensus pattern (35 bp):
TTCATTTAACTAAACTAGCTCATTCATCAAAATAG
Found at i:86328 original size:19 final size:20
Alignment explanation
Indices: 86282--86330 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 20
86272 TAATAAAGGG
86282 AATAATAAT-ATAAGTAATGA
1 AATAA-AATAATAAGTAATGA
86302 AA-ATAAATAATAAG-AATGA
1 AATA-AAATAATAAGTAATGA
86321 AATAAAATAA
1 AATAAAATAA
86331 AGAAAGGATA
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
19 17 0.65
20 9 0.35
ACGTcount: A:0.67, C:0.00, G:0.08, T:0.24
Consensus pattern (20 bp):
AATAAAATAATAAGTAATGA
Found at i:86768 original size:20 final size:20
Alignment explanation
Indices: 86743--86781 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
86733 GAAACCCCTT
86743 TGAAAATACATGATTTTAAA
1 TGAAAATACATGATTTTAAA
86763 TGAAAATACATGATTTTAA
1 TGAAAATACATGATTTTAA
86782 CGAAGATACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.49, C:0.05, G:0.10, T:0.36
Consensus pattern (20 bp):
TGAAAATACATGATTTTAAA
Found at i:86792 original size:19 final size:20
Alignment explanation
Indices: 86744--86793 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
86734 AAACCCCTTT
*
86744 GAAAATACATGATTTTAAAT
1 GAAAATACATGATTTTAAAC
86764 GAAAATACATGATTTT-AAC
1 GAAAATACATGATTTTAAAC
*
86783 GAAGATACATG
1 GAAAATACATG
86794 CTCTTGGCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
19 12 0.43
20 16 0.57
ACGTcount: A:0.48, C:0.08, G:0.14, T:0.30
Consensus pattern (20 bp):
GAAAATACATGATTTTAAAC
Found at i:88512 original size:18 final size:18
Alignment explanation
Indices: 88486--88529 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
88476 GTGAAGTATG
* *
88486 AATGGTGTTGTCGTGGCA
1 AATGTTGTTGTCATGGCA
*
88504 AATGTTGTTGTCATGGTA
1 AATGTTGTTGTCATGGCA
*
88522 AGTGTTGT
1 AATGTTGT
88530 AAGGTTAAAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.18, C:0.07, G:0.34, T:0.41
Consensus pattern (18 bp):
AATGTTGTTGTCATGGCA
Found at i:93761 original size:20 final size:21
Alignment explanation
Indices: 93721--93761 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
93711 TGCTTGAATG
93721 ATGCACATGGAAGCCTACTTGA
1 ATGCACATGG-AGCCTACTTGA
*
93743 ATGCACATGG-GCCTTCTTG
1 ATGCACATGGAGCCTACTTG
93762 CAAGGATTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 8 0.44
22 10 0.56
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.27
Consensus pattern (21 bp):
ATGCACATGGAGCCTACTTGA
Found at i:96888 original size:13 final size:12
Alignment explanation
Indices: 96866--96921 Score: 51
Period size: 13 Copynumber: 4.3 Consensus size: 12
96856 TCTTTTTGAC
96866 TTTTCTTTTTCTT
1 TTTTC-TTTTCTT
*
96879 TTCTTCTTTTCTGAA
1 TT-TTCTTTTCT--T
96894 TTTT-TTTTCTTT
1 TTTTCTTTTC-TT
96906 TTTTCTTTTCTT
1 TTTTCTTTTCTT
96918 TTTT
1 TTTT
96922 GCACTCCAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 11
0.73 0.04 0.22
Matches are distributed among these distances:
12 10 0.28
13 18 0.50
14 6 0.17
15 2 0.06
ACGTcount: A:0.04, C:0.14, G:0.02, T:0.80
Consensus pattern (12 bp):
TTTTCTTTTCTT
Found at i:96915 original size:26 final size:28
Alignment explanation
Indices: 96854--96916 Score: 87
Period size: 26 Copynumber: 2.4 Consensus size: 28
96844 CTTGGCTTGC
*
96854 TTTCTTTT-TGACTTTTCTTTTTCTTTT
1 TTTCTTTTCTGACATTTCTTTTTCTTTT
*
96881 CTTCTTTTCTGA-ATTT-TTTTTCTTTT
1 TTTCTTTTCTGACATTTCTTTTTCTTTT
96907 TTTCTTTTCT
1 TTTCTTTTCT
96917 TTTTTGCACT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
26 19 0.59
27 10 0.31
28 3 0.09
ACGTcount: A:0.05, C:0.16, G:0.03, T:0.76
Consensus pattern (28 bp):
TTTCTTTTCTGACATTTCTTTTTCTTTT
Found at i:103094 original size:7 final size:7
Alignment explanation
Indices: 103084--103116 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
103074 TATTTTTCAA
103084 CTTTCCC
1 CTTTCCC
103091 CTTTCCC
1 CTTTCCC
103098 CTTTCCC
1 CTTTCCC
103105 CTTTCCC
1 CTTTCCC
103112 CTTTC
1 CTTTC
103117 TTAAATACCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.00, C:0.55, G:0.00, T:0.45
Consensus pattern (7 bp):
CTTTCCC
Found at i:104871 original size:41 final size:41
Alignment explanation
Indices: 104826--104960 Score: 227
Period size: 41 Copynumber: 3.3 Consensus size: 41
104816 CATGTATTAA
*
104826 TTCACAATTCAATTCAATTCAATCATGACAACATGCAATAG
1 TTCACCATTCAATTCAATTCAATCATGACAACATGCAATAG
104867 TTCACCATTCAATTCAATTCAATCATGACAACATGCAATAG
1 TTCACCATTCAATTCAATTCAATCATGACAACATGCAATAG
* *
104908 TTCACCATTCAATTCAATTCAATCATGGA-AGCATGCAATAC
1 TTCACCATTCAATTCAATTCAATCAT-GACAACATGCAATAG
104949 TTCACCATTCAA
1 TTCACCATTCAA
104961 CTTGATTTGA
Statistics
Matches: 90, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
41 88 0.98
42 2 0.02
ACGTcount: A:0.39, C:0.24, G:0.07, T:0.30
Consensus pattern (41 bp):
TTCACCATTCAATTCAATTCAATCATGACAACATGCAATAG
Found at i:104982 original size:41 final size:41
Alignment explanation
Indices: 104861--105062 Score: 203
Period size: 41 Copynumber: 4.9 Consensus size: 41
104851 TGACAACATG
* * * ** * *
104861 CAATAGTTCACCATTCAA-TTCAATTCAATCATGACAACATG
1 CAATAATTCACCATTCAACTT-GATTCGATCATGGTAGCATA
* * * * *
104902 CAATAGTTCACCATTCAA-TTCAATTCAATCATGGAAGCATG
1 CAATAATTCACCATTCAACTT-GATTCGATCATGGTAGCATA
* * *
104943 CAATACTTCACCATTCAACTTGATTTGATCGTGGTAGCATA
1 CAATAATTCACCATTCAACTTGATTCGATCATGGTAGCATA
104984 CAATAATTCACCATTCAACTTGATTCGATCATGGT-GACATA
1 CAATAATTCACCATTCAACTTGATTCGATCATGGTAG-CATA
**
105025 CAATAATTCAGTATTCAACTTGATTCGATCATGGTAGC
1 CAATAATTCACCATTCAACTTGATTCGATCATGGTAGC
105063 TGATGTGATC
Statistics
Matches: 143, Mismatches: 15, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
40 1 0.01
41 139 0.97
42 3 0.02
ACGTcount: A:0.34, C:0.22, G:0.12, T:0.32
Consensus pattern (41 bp):
CAATAATTCACCATTCAACTTGATTCGATCATGGTAGCATA
Found at i:104988 original size:82 final size:82
Alignment explanation
Indices: 104823--105062 Score: 245
Period size: 82 Copynumber: 2.9 Consensus size: 82
104813 CAGCATGTAT
* * * *
104823 TAATTCACAATTCAATTCAATTCAATCAT-GACAACATGCAATAGTTCACCATTCAA-TTCAATT
1 TAATTCACCATTCAATTCAATTCAATCATGGA-AGCATGCAATAATTCACCATTCAACTT-GATT
* ** * *
104886 CAATCATGACAACATGCAA
64 CGATCATGGTAGCATACAA
* * *
104905 TAGTTCACCATTCAATTCAATTCAATCATGGAAGCATGCAATACTTCACCATTCAACTTGATTTG
1 TAATTCACCATTCAATTCAATTCAATCATGGAAGCATGCAATAATTCACCATTCAACTTGATTCG
*
104970 ATCGTGGTAGCATACAA
66 ATCATGGTAGCATACAA
* * * * **
104987 TAATTCACCATTCAACTT-GATTCGATCATGG-TGACATACAATAATTCAGTATTCAACTTGATT
1 TAATTCACCATTCAA-TTCAATTCAATCATGGAAG-CATGCAATAATTCACCATTCAACTTGATT
105050 CGATCATGGTAGC
64 CGATCATGGTAGC
105063 TGATGTGATC
Statistics
Matches: 132, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
81 1 0.01
82 125 0.95
83 6 0.05
ACGTcount: A:0.35, C:0.22, G:0.11, T:0.32
Consensus pattern (82 bp):
TAATTCACCATTCAATTCAATTCAATCATGGAAGCATGCAATAATTCACCATTCAACTTGATTCG
ATCATGGTAGCATACAA
Found at i:108188 original size:23 final size:24
Alignment explanation
Indices: 108162--108206 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
108152 CTTTGTTTTC
*
108162 TCTCCCT-CTTTTTCTTTCTTAAT
1 TCTCCCTAATTTTTCTTTCTTAAT
*
108185 TCTCTCTAATTTTTCTTTCTTA
1 TCTCCCTAATTTTTCTTTCTTA
108207 GGCCGGTCAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.11, C:0.27, G:0.00, T:0.62
Consensus pattern (24 bp):
TCTCCCTAATTTTTCTTTCTTAAT
Found at i:113612 original size:90 final size:89
Alignment explanation
Indices: 113456--113622 Score: 289
Period size: 90 Copynumber: 1.9 Consensus size: 89
113446 CCTAACACAC
113456 CCTTTTATAGCCAAGTTAACCTAATCATATTAGGGTTTTATTATTTCAAATTAATTAAATCAATA
1 CCTTTTATAGCCAAGTTAACCTAATCATATTAGGGTTTTATTATTTCAAATTAATTAAATCAATA
113521 TTTAATTAATTAGAAGTTGATAAT
66 TTTAATTAATTAGAAGTTGATAAT
* * * *
113545 CCTTTTATATCTAAGTTACCCTAATCATATTAGGGATTTTATTATTTCAAATTAATTAAATCTAT
1 CCTTTTATAGCCAAGTTAACCTAATCATATTAGGG-TTTTATTATTTCAAATTAATTAAATCAAT
113610 ATTTAATTAATTA
65 ATTTAATTAATTA
113623 AAATTAAATA
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
89 32 0.44
90 41 0.56
ACGTcount: A:0.37, C:0.11, G:0.07, T:0.45
Consensus pattern (89 bp):
CCTTTTATAGCCAAGTTAACCTAATCATATTAGGGTTTTATTATTTCAAATTAATTAAATCAATA
TTTAATTAATTAGAAGTTGATAAT
Found at i:114813 original size:11 final size:11
Alignment explanation
Indices: 114797--114821 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
114787 TGCCATGTTC
114797 TTTGTGAGCTG
1 TTTGTGAGCTG
114808 TTTGTGAGCTG
1 TTTGTGAGCTG
114819 TTT
1 TTT
114822 ATGTCTCCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.08, G:0.32, T:0.52
Consensus pattern (11 bp):
TTTGTGAGCTG
Found at i:114856 original size:30 final size:30
Alignment explanation
Indices: 114814--114918 Score: 140
Period size: 30 Copynumber: 3.5 Consensus size: 30
114804 GCTGTTTGTG
*
114814 AGCTGTTTATGTC-TCCTAAATGCTCCACCA
1 AGCTGTATATGTCTTCC-AAATGCTCCACCA
* * *
114844 AGCTGTACATGTCTTCCAAATTCTCCACTA
1 AGCTGTATATGTCTTCCAAATGCTCCACCA
*
114874 AGCTGTATATGTCTTCCAAATGCTCCATCA
1 AGCTGTATATGTCTTCCAAATGCTCCACCA
*
114904 AGATGTATATGTCTT
1 AGCTGTATATGTCTT
114919 TTATAGATGA
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
30 62 0.95
31 3 0.05
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.35
Consensus pattern (30 bp):
AGCTGTATATGTCTTCCAAATGCTCCACCA
Found at i:121648 original size:23 final size:24
Alignment explanation
Indices: 121609--121662 Score: 74
Period size: 23 Copynumber: 2.2 Consensus size: 24
121599 TTGTTTTTCT
121609 TTTCTTTCTTTTTGAGTGCTTTCAA
1 TTTC-TTCTTTTTGAGTGCTTTCAA
* *
121634 TTTCTTC-TTTTGAGTGCTTTGAT
1 TTTCTTCTTTTTGAGTGCTTTCAA
121657 TTTCTT
1 TTTCTT
121663 TGCTGGATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
23 20 0.74
24 3 0.11
25 4 0.15
ACGTcount: A:0.09, C:0.15, G:0.13, T:0.63
Consensus pattern (24 bp):
TTTCTTCTTTTTGAGTGCTTTCAA
Found at i:124196 original size:45 final size:45
Alignment explanation
Indices: 124146--124278 Score: 158
Period size: 46 Copynumber: 2.9 Consensus size: 45
124136 TAATGCACCA
* * * *
124146 TATGCATCTCAATTATGTCATCCTTTCGTGCCTCTTATACGCTAT
1 TATGCATTTCATTTATGGCATCCTTTCATGCCTCTTATACGCTAT
* * *
124191 TATGCATTTCATTTATGGCATCCTCTCATGCCCCTTTTTACGCTAT
1 TATGCATTTCATTTATGGCATCCTTTCATGCCTC-TTATACGCTAT
** *
124237 TATATATTTCATTTATGGCATCCTTTCATGCCCTTTTATACG
1 TATGCATTTCATTTATGGCATCCTTTCATG-CCTCTTATACG
124279 ACATTACACA
Statistics
Matches: 73, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
45 28 0.38
46 43 0.59
47 2 0.03
ACGTcount: A:0.20, C:0.26, G:0.11, T:0.44
Consensus pattern (45 bp):
TATGCATTTCATTTATGGCATCCTTTCATGCCTCTTATACGCTAT
Found at i:124452 original size:68 final size:68
Alignment explanation
Indices: 124311--124919 Score: 857
Period size: 68 Copynumber: 9.0 Consensus size: 68
124301 TAGTATTTTG
* * * * * * *
124311 CTCAAAGGCATTTAACCTTTCATATAACTGGCATGA-TAACACCTTTTTGTCAAATGCACAGCTA
1 CTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTTA
**
124375 TAC
66 GGC
* *
124378 CTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTTTGTCAAATGCAAAGTTA
1 CTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTTA
124443 GGC
66 GGC
* * *
124446 CTCAAAGACACTTAGCCTTTCATCTAAATGG-ATAATTGATACCTTTCTGTCAAATGCACAGTTA
1 CTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTTA
*
124510 GGA
66 GGC
* **
124513 CTCAAAGGCACTTAGCCTTTCACCTAACTGGCATAATTGACATATTTCTGTCAAATGCACAGTTA
1 CTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTTA
*
124578 GGT
66 GGC
* * * *
124581 CTCAAAGGCACTTAGCTTTTCATCTAACAT-ACATAATTGAAACATTTCTGTCAAATGCACAGTT
1 CTCAAAGGCACTTAGCCTTTCATCTAAC-TGGCATAATTGACACCTTTCTGTCAAATGCACAGTT
124645 AGGC
65 AGGC
* * *
124649 CTCAAAGGCACCTAGCCTTTCATCT-ACTGGCACAATTGACACCTTTTTGTCAAATGCACAGTTA
1 CTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTTA
124713 GGC
66 GGC
* *
124716 CTCAAAGGCACTTAGCCTTTCATTTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAATTA
1 CTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTTA
124781 GGC
66 GGC
* * *
124784 CTCAAAGGTACTTAGCCTTTCATCTAACTGGCATAATTGACACGTTTCTGTCAAATGCACAATTA
1 CTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTTA
*
124849 GGT
66 GGC
* * * *
124852 CTCAAAGGCACTTAGCCTTTCATATAACTGGCATAATTGTCACCTTTCTGTCATATGCACAATTA
1 CTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTTA
124917 GGC
66 GGC
124920 TATTAATCTT
Statistics
Matches: 487, Mismatches: 50, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
66 1 0.00
67 150 0.31
68 335 0.69
69 1 0.00
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (68 bp):
CTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTTA
GGC
Found at i:124504 original size:135 final size:136
Alignment explanation
Indices: 124311--124917 Score: 787
Period size: 135 Copynumber: 4.5 Consensus size: 136
124301 TAGTATTTTG
* * * * * * * * *
124311 CTCAAAGGCATTTAACCTTTCATATAACTGGCATGA-TAACACCTTTTTGTCAAATGCACAGCTA
1 CTCAAAGGCACTTAGCCTTTCATCTAAATGGCATAATTGATACCTTTCTGTCAAATGCACAGTTA
* *
124375 TACCTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTTTGTCAAATGCAAAG
66 GACCTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCAAAG
124440 TTAGGC
131 TTAGGC
*
124446 CTCAAAGACACTTAGCCTTTCATCTAAATGG-ATAATTGATACCTTTCTGTCAAATGCACAGTTA
1 CTCAAAGGCACTTAGCCTTTCATCTAAATGGCATAATTGATACCTTTCTGTCAAATGCACAGTTA
* ** *
124510 GGA-CTCAAAGGCACTTAGCCTTTCACCTAACTGGCATAATTGACATATTTCTGTCAAATGCACA
66 -GACCTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCAAA
*
124574 GTTAGGT
130 GTTAGGC
* * * *
124581 CTCAAAGGCACTTAGCTTTTCATCTAACAT-ACATAATTGAAACATTTCTGTCAAATGCACAGTT
1 CTCAAAGGCACTTAGCCTTTCATCTAA-ATGGCATAATTGATACCTTTCTGTCAAATGCACAGTT
* * * * *
124645 AGGCCTCAAAGGCACCTAGCCTTTCATCT-ACTGGCACAATTGACACCTTTTTGTCAAATGCACA
65 AGACCTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCAAA
124709 GTTAGGC
130 GTTAGGC
* * * *
124716 CTCAAAGGCACTTAGCCTTTCATTTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAATTA
1 CTCAAAGGCACTTAGCCTTTCATCTAAATGGCATAATTGATACCTTTCTGTCAAATGCACAGTTA
* * *
124781 GGCCTCAAAGGTACTTAGCCTTTCATCTAACTGGCATAATTGACACGTTTCTGTCAAATGCACAA
66 GACCTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCA-AA
*
124846 -TTAGGT
130 GTTAGGC
* * * *
124852 CTCAAAGGCACTTAGCCTTTCATATAACTGGCATAATTG-TCACCTTTCTGTCATATGCACAATT
1 CTCAAAGGCACTTAGCCTTTCATCTAAATGGCATAATTGAT-ACCTTTCTGTCAAATGCACAGTT
124916 AG
65 AG
124918 GCTATTAATC
Statistics
Matches: 416, Mismatches: 47, Indels: 17
0.87 0.10 0.04
Matches are distributed among these distances:
134 4 0.01
135 257 0.62
136 154 0.37
137 1 0.00
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (136 bp):
CTCAAAGGCACTTAGCCTTTCATCTAAATGGCATAATTGATACCTTTCTGTCAAATGCACAGTTA
GACCTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCAAAG
TTAGGC
Found at i:124607 original size:203 final size:204
Alignment explanation
Indices: 124311--124918 Score: 841
Period size: 203 Copynumber: 3.0 Consensus size: 204
124301 TAGTATTTTG
* * * * * *
124311 CTCAAAGGCATTTAACCTTTCATATAACTGGCATGA-TAACACCTTTTTGTCAAATGCACAGCTA
1 CTCAAAGGCACTTAGCCTTTCATATAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTTA
** * *
124375 TACCTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTTTGTCAAATGCAAAG
66 GGCCTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACATTTCTGTCAAATGCAAAG
* *
124440 TTAGGCCTCAAAGACACTTAGCCTTTCATCTAAATGG-ATAATTGATACCTTTCTGTCAAATGCA
131 TTAGGCCTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGATACCTTTCTGTCAAATGCA
124504 CAGTTAGGA
196 CAGTTAGGA
** **
124513 CTCAAAGGCACTTAGCCTTTCACCTAACTGGCATAATTGACATATTTCTGTCAAATGCACAGTTA
1 CTCAAAGGCACTTAGCCTTTCATATAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTTA
* * * * *
124578 GGTCTCAAAGGCACTTAGCTTTTCATCTAACAT-ACATAATTGAAACATTTCTGTCAAATGCACA
66 GGCCTCAAAGGCACTTAGCCTTTCATCTAAC-TGGCATAATTGACACATTTCTGTCAAATGCAAA
* * * *
124642 GTTAGGCCTCAAAGGCACCTAGCCTTTCATCT-ACTGGCACAATTGACACCTTTTTGTCAAATGC
130 GTTAGGCCTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGATACCTTTCTGTCAAATGC
*
124706 ACAGTTAGGC
195 ACAGTTAGGA
* *
124716 CTCAAAGGCACTTAGCCTTTCATTTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAATTA
1 CTCAAAGGCACTTAGCCTTTCATATAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTTA
* *
124781 GGCCTCAAAGGTACTTAGCCTTTCATCTAACTGGCATAATTGACACGTTTCTGTCAAATGCACAA
66 GGCCTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACATTTCTGTCAAATGCA-AA
* * *
124846 -TTAGGTCTCAAAGGCACTTAGCCTTTCATATAACTGGCATAATTG-TCACCTTTCTGTCATATG
130 GTTAGGCCTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGAT-ACCTTTCTGTCAAATG
*
124909 CACAATTAGG
194 CACAGTTAGG
124919 CTATTAATCT
Statistics
Matches: 353, Mismatches: 46, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
202 36 0.10
203 280 0.79
204 37 0.10
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (204 bp):
CTCAAAGGCACTTAGCCTTTCATATAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTTA
GGCCTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACATTTCTGTCAAATGCAAAG
TTAGGCCTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGATACCTTTCTGTCAAATGCA
CAGTTAGGA
Found at i:125259 original size:55 final size:54
Alignment explanation
Indices: 125131--125387 Score: 354
Period size: 55 Copynumber: 4.7 Consensus size: 54
125121 ACATATATTT
* * *
125131 CCCATACGAAAATTCATACACTTAGTATGTATTTCTTAG-TTCGCACACATAGTG
1 CCCATAC-AAAATTCATACACTTAGTATGGATTTCTTAGTTTTGCACACAAAGTG
* * *
125185 CCCATACAAAACTTTATACACTTGGTATGGTTTTCTTAGTTTTGCACACAAAGTG
1 CCCATACAAAA-TTCATACACTTAGTATGGATTTCTTAGTTTTGCACACAAAGTG
* *
125240 CCCATACATAAATTCATACACTTAGTATGAATTTCTTAGTTTTTCACACAAAGTG
1 CCCATACA-AAATTCATACACTTAGTATGGATTTCTTAGTTTTGCACACAAAGTG
*
125295 CCCATACGAAAATTCATACACTTAGTATGGATTTCATAGTTTTGCACACAAAGTG
1 CCCATAC-AAAATTCATACACTTAGTATGGATTTCTTAGTTTTGCACACAAAGTG
* * *
125350 CCCATACGGAAATTCATGCACTTAGTATGAATTTCTTA
1 CCCATAC-AAAATTCATACACTTAGTATGGATTTCTTA
125388 ACTTTTTGCA
Statistics
Matches: 181, Mismatches: 18, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
53 4 0.02
54 30 0.17
55 143 0.79
56 4 0.02
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.34
Consensus pattern (54 bp):
CCCATACAAAATTCATACACTTAGTATGGATTTCTTAGTTTTGCACACAAAGTG
Found at i:129497 original size:45 final size:46
Alignment explanation
Indices: 129436--129566 Score: 156
Period size: 46 Copynumber: 2.9 Consensus size: 46
129426 TAATGCACTA
* * * *
129436 TATGCATCTCAATTATGGCATCTTTTCATGCCTC-TTATACGCTAT
1 TATGCATTTCATTTATGGCATCATTTCATGCCCCTTTATACGCTAT
* * *
129481 TATGCATTTCATTTATGGCATCATCTCATTCCCCTTTATATGCTAT
1 TATGCATTTCATTTATGGCATCATTTCATGCCCCTTTATACGCTAT
* * * *
129527 TATACATTTCGTTTATGGCATCCTTTCATGCCCTTTTATA
1 TATGCATTTCATTTATGGCATCATTTCATGCCCCTTTATA
129567 TGACATTATG
Statistics
Matches: 72, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
45 28 0.39
46 44 0.61
ACGTcount: A:0.21, C:0.24, G:0.10, T:0.45
Consensus pattern (46 bp):
TATGCATTTCATTTATGGCATCATTTCATGCCCCTTTATACGCTAT
Found at i:129689 original size:68 final size:68
Alignment explanation
Indices: 129604--130350 Score: 928
Period size: 68 Copynumber: 11.0 Consensus size: 68
129594 TCTTTTACTT
* * * * *
129604 AAAGGCATTTAACCTTTCACCTAACTCGCATGAA-TGACATCTTTTTGTCAAATGCACAGTTAGG
1 AAAGGCACTTAGCCTTTCATCTAACTAGCAT-AATTGACACCTTTTTGTCAAATGCACAGTTAGG
129668 CCTC
65 CCTC
** ** * *
129672 AAAGGCACTTAAACTTTCATCTAAC-AATATAATTGACACCTTTTTTTCAAATGCACAATTAGGC
1 AAAGGCACTTAGCCTTTCATCTAACTAGCATAATTGACACCTTTTTGTCAAATGCACAGTTAGGC
129736 CTC
66 CTC
* *
129739 AAAGGCACTTAGCCTTTCATCTAACTAGCATAATTGACACCTTTTTTGTCAATTGCACAGCTAGG
1 AAAGGCACTTAGCCTTTCATCTAACTAGCATAATTGACACC-TTTTTGTCAAATGCACAGTTAGG
129804 CCTC
65 CCTC
* * * * *
129808 AAAGGCACTTAGCCTTTCATCTAACTGGCATTATTGACACCTTTATGTCAATTGCA-ATGTTTGG
1 AAAGGCACTTAGCCTTTCATCTAACTAGCATAATTGACACCTTTTTGTCAAATGCACA-GTTAGG
129872 CCTC
65 CCTC
* * * * *
129876 AAAGGCACTTAGCCTTTCATCTGACTAGCATAATTGACATCTTTCTGTCAAATGCATAATTAAGG
1 AAAGGCACTTAGCCTTTCATCTAACTAGCATAATTGACACCTTTTTGTCAAATGCACAGTT-AGG
*
129941 -TTC
65 CCTC
* * * *
129944 AAAGGCACTTATCCTTTCATCTAACTGGCATAATTGACACATTTCTGTCAAATGCACAGTTAGGC
1 AAAGGCACTTAGCCTTTCATCTAACTAGCATAATTGACACCTTTTTGTCAAATGCACAGTTAGGC
130009 CTC
66 CTC
* * * * * *
130012 AAAGGCACTTAGTCTTTTAATCTAACTGGCATAATTGACACCTTTATGTCAAATGCATAGTTATG
1 AAAGGCACTTAG-CCTTTCATCTAACTAGCATAATTGACACCTTTTTGTCAAATGCACAGTTAGG
130077 CCTC
65 CCTC
* * *
130081 AAAGGAACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTTTGTCAATTGCACAGTTAGGC
1 AAAGGCACTTAGCCTTTCATCTAACTAGCATAATTGACACCTTTTTGTCAAATGCACAGTTAGGC
130146 CTC
66 CTC
* * * * * * * * *
130149 AAACGCACTTAGCCTTTCATATAACTGGAACAATTGACACCTTTCTATCAAATCCACAATTAGGC
1 AAAGGCACTTAGCCTTTCATCTAACTAGCATAATTGACACCTTTTTGTCAAATGCACAGTTAGGC
130214 CTC
66 CTC
*
130217 AAATGCACTTAGCCTTTCATCTAACTAGCATAATTGACACCTTTTCTGTCAAATGCACAGTTAGG
1 AAAGGCACTTAGCCTTTCATCTAACTAGCATAATTGACACCTTTT-TGTCAAATGCACAGTTAGG
130282 CCTC
65 CCTC
* ** * *
130286 AAAGACACTTAGCCTTTCATCTAACT-GACATAATTGACATATTTCTGTCAAATGCACTGTTAGG
1 AAAGGCACTTAGCCTTTCATCTAACTAG-CATAATTGACACCTTTTTGTCAAATGCACAGTTAGG
130350 C
65 C
130351 TATTAATCTT
Statistics
Matches: 591, Mismatches: 78, Indels: 20
0.86 0.11 0.03
Matches are distributed among these distances:
66 2 0.00
67 60 0.10
68 345 0.58
69 184 0.31
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (68 bp):
AAAGGCACTTAGCCTTTCATCTAACTAGCATAATTGACACCTTTTTGTCAAATGCACAGTTAGGC
CTC
Found at i:129906 original size:137 final size:136
Alignment explanation
Indices: 129604--130350 Score: 937
Period size: 137 Copynumber: 5.5 Consensus size: 136
129594 TCTTTTACTT
* * * * * *
129604 AAAGGCATTTAACCTTTCACCTAACTCGCATGAA-TGACATCTTTTTGTCAAATGCACAGTTAGG
1 AAAGGCACTTAGCCTTTCATCTAACTAGCAT-AATTGACACCTTTCTGTCAAATGCACAGTTAGG
** *** * * *
129668 CCTCAAAGGCACTTAAACTTTCATCTAAC-AATATAATTGACACCTTTTTTTCAAATGCACAATT
65 CCTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTT
129732 AGGCCTC
130 AGGCCTC
* * *
129739 AAAGGCACTTAGCCTTTCATCTAACTAGCATAATTGACACCTTTTTTGTCAATTGCACAGCTAGG
1 AAAGGCACTTAGCCTTTCATCTAACTAGCATAATTGACACC-TTTCTGTCAAATGCACAGTTAGG
* * *
129804 CCTCAAAGGCACTTAGCCTTTCATCTAACTGGCATTATTGACACCTTTATGTCAATTGCA-ATGT
65 CCTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACA-GT
*
129868 TTGGCCTC
129 TAGGCCTC
* * * *
129876 AAAGGCACTTAGCCTTTCATCTGACTAGCATAATTGACATCTTTCTGTCAAATGCATAATTAAGG
1 AAAGGCACTTAGCCTTTCATCTAACTAGCATAATTGACACCTTTCTGTCAAATGCACAGTT-AGG
* * *
129941 -TTCAAAGGCACTTATCCTTTCATCTAACTGGCATAATTGACACATTTCTGTCAAATGCACAGTT
65 CCTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTT
130005 AGGCCTC
130 AGGCCTC
* * * * * *
130012 AAAGGCACTTAGTCTTTTAATCTAACTGGCATAATTGACACCTTTATGTCAAATGCATAGTTATG
1 AAAGGCACTTAG-CCTTTCATCTAACTAGCATAATTGACACCTTTCTGTCAAATGCACAGTTAGG
* * *
130077 CCTCAAAGGAACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTTTGTCAATTGCACAGTT
65 CCTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTT
130142 AGGCCTC
130 AGGCCTC
* * * * * * * *
130149 AAACGCACTTAGCCTTTCATATAACTGGAACAATTGACACCTTTCTATCAAATCCACAATTAGGC
1 AAAGGCACTTAGCCTTTCATCTAACTAGCATAATTGACACCTTTCTGTCAAATGCACAGTTAGGC
* *
130214 CTCAAATGCACTTAGCCTTTCATCTAACTAGCATAATTGACACCTTTTCTGTCAAATGCACAGTT
66 CTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACC-TTTCTGTCAAATGCACAGTT
130279 AGGCCTC
130 AGGCCTC
* ** *
130286 AAAGACACTTAGCCTTTCATCTAACT-GACATAATTGACATATTTCTGTCAAATGCACTGTTAGG
1 AAAGGCACTTAGCCTTTCATCTAACTAG-CATAATTGACACCTTTCTGTCAAATGCACAGTTAGG
130350 C
65 C
130351 TATTAATCTT
Statistics
Matches: 528, Mismatches: 74, Indels: 18
0.85 0.12 0.03
Matches are distributed among these distances:
134 2 0.00
135 33 0.06
136 224 0.42
137 269 0.51
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (136 bp):
AAAGGCACTTAGCCTTTCATCTAACTAGCATAATTGACACCTTTCTGTCAAATGCACAGTTAGGC
CTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTTA
GGCCTC
Found at i:129963 original size:205 final size:204
Alignment explanation
Indices: 129604--130342 Score: 957
Period size: 205 Copynumber: 3.6 Consensus size: 204
129594 TCTTTTACTT
* * * * * *
129604 AAAGGCATTTAACCTTTCACCTAACTCGCATGAA-TGACATCTTTTTGTCAAATGCACAGTTAGG
1 AAAGGCACTTAGCCTTTCATCTAACTGGCAT-AATTGACACCTTTATGTCAAATGCACAGTTAGG
** ** * *
129668 CCTCAAAGGCACTTAAACTTTCATCTAAC-AATATAATTGACACCTTTTTTTCAAATGCACAATT
65 CCTCAAAGGCACTTAGCCTTTCATCTAACTAGCATAATTGACACCTTTCTGTCAAATGCACAATT
* * *
129732 AGGCCTCAAAGGCACTTAGCCTTTCATCTAACTAGCATAATTGACACCTTTTTTGTCAATTGCAC
130 AGGCCTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACC-TTTCTGTCAAATGCAC
*
129797 AGCTAGGCCTC
194 AGTTAGGCCTC
* * *
129808 AAAGGCACTTAGCCTTTCATCTAACTGGCATTATTGACACCTTTATGTCAATTGCA-ATGTTTGG
1 AAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTATGTCAAATGCACA-GTTAGG
* * *
129872 CCTCAAAGGCACTTAGCCTTTCATCTGACTAGCATAATTGACATCTTTCTGTCAAATGCATAATT
65 CCTCAAAGGCACTTAGCCTTTCATCTAACTAGCATAATTGACACCTTTCTGTCAAATGCACAATT
* * *
129937 AAGG-TTCAAAGGCACTTATCCTTTCATCTAACTGGCATAATTGACACATTTCTGTCAAATGCAC
130 -AGGCCTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCAC
130001 AGTTAGGCCTC
194 AGTTAGGCCTC
* * * *
130012 AAAGGCACTTAGTCTTTTAATCTAACTGGCATAATTGACACCTTTATGTCAAATGCATAGTTATG
1 AAAGGCACTTAG-CCTTTCATCTAACTGGCATAATTGACACCTTTATGTCAAATGCACAGTTAGG
* * * * *
130077 CCTCAAAGGAACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTTTGTCAATTGCACAGTT
65 CCTCAAAGGCACTTAGCCTTTCATCTAACTAGCATAATTGACACCTTTCTGTCAAATGCACAATT
* * * * * *
130142 AGGCCTCAAACGCACTTAGCCTTTCATATAACTGGAACAATTGACACCTTTCTATCAAATCCACA
130 AGGCCTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACA
*
130207 ATTAGGCCTC
195 GTTAGGCCTC
* * *
130217 AAATGCACTTAGCCTTTCATCTAACTAGCATAATTGACACCTTTTCTGTCAAATGCACAGTTAGG
1 AAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACC-TTTATGTCAAATGCACAGTTAGG
* **
130282 CCTCAAAGACACTTAGCCTTTCATCTAACT-GACATAATTGACATATTTCTGTCAAATGCAC
65 CCTCAAAGGCACTTAGCCTTTCATCTAACTAG-CATAATTGACACCTTTCTGTCAAATGCAC
130343 TGTTAGGCTA
Statistics
Matches: 464, Mismatches: 62, Indels: 17
0.85 0.11 0.03
Matches are distributed among these distances:
203 2 0.00
204 143 0.31
205 315 0.68
206 4 0.01
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (204 bp):
AAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTATGTCAAATGCACAGTTAGGC
CTCAAAGGCACTTAGCCTTTCATCTAACTAGCATAATTGACACCTTTCTGTCAAATGCACAATTA
GGCCTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAG
TTAGGCCTC
Found at i:130621 original size:54 final size:55
Alignment explanation
Indices: 130563--130763 Score: 289
Period size: 55 Copynumber: 3.7 Consensus size: 55
130553 CATATATTTT
* *
130563 CCATACGAAAATTCATACACTTAGTATGGATTTCTTAG-TTGGCACACATAA-TGC
1 CCATACGAAAATTCATACACTTAGTATGAATTTCTTAGTTTTGCACACA-AACTGC
* * *
130617 CCATACGAAAATTCATACACTTAGTATGAATTTCTTTGTTTTACACACAAAGTGC
1 CCATACGAAAATTCATACACTTAGTATGAATTTCTTAGTTTTGCACACAAACTGC
* * * *
130672 CTATACGAAAATCCATACACTTAGTATGGATTTCCTAGTTTTGCACACAAACTGC
1 CCATACGAAAATTCATACACTTAGTATGAATTTCTTAGTTTTGCACACAAACTGC
*
130727 CCATACGGAAATTCATACACTTAGTATGAATTTCTTA
1 CCATACGAAAATTCATACACTTAGTATGAATTTCTTA
130764 ACTTTTTTGA
Statistics
Matches: 129, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
54 38 0.29
55 91 0.71
ACGTcount: A:0.34, C:0.21, G:0.12, T:0.33
Consensus pattern (55 bp):
CCATACGAAAATTCATACACTTAGTATGAATTTCTTAGTTTTGCACACAAACTGC
Found at i:130757 original size:110 final size:109
Alignment explanation
Indices: 130565--130762 Score: 335
Period size: 110 Copynumber: 1.8 Consensus size: 109
130555 TATATTTTCC
* *
130565 ATACGAAAATTCATACACTTAGTATGGATTTCTTAGTTGGCACACATAATGCCCATACGAAAATT
1 ATACGAAAATCCATACACTTAGTATGGATTTCCTAGTTGGCACACATAATGCCCATACGAAAATT
130630 CATACACTTAGTATGAATTTCTTTGTTTTACACACAAAGTGCCT
66 CATACACTTAGTATGAATTTCTTTGTTTTACACACAAAGTGCCT
* *
130674 ATACGAAAATCCATACACTTAGTATGGATTTCCTAGTTTTGCACACA-AACTGCCCATACGGAAA
1 ATACGAAAATCCATACACTTAGTATGGATTTCCTAG-TTGGCACACATAA-TGCCCATACGAAAA
130738 TTCATACACTTAGTATGAATTTCTT
64 TTCATACACTTAGTATGAATTTCTT
130763 AACTTTTTTG
Statistics
Matches: 83, Mismatches: 4, Indels: 3
0.92 0.04 0.03
Matches are distributed among these distances:
109 36 0.43
110 47 0.57
ACGTcount: A:0.34, C:0.20, G:0.13, T:0.33
Consensus pattern (109 bp):
ATACGAAAATCCATACACTTAGTATGGATTTCCTAGTTGGCACACATAATGCCCATACGAAAATT
CATACACTTAGTATGAATTTCTTTGTTTTACACACAAAGTGCCT
Found at i:134423 original size:52 final size:53
Alignment explanation
Indices: 134340--134527 Score: 185
Period size: 52 Copynumber: 3.6 Consensus size: 53
134330 TACCGTATCG
* * *
134340 GCACTATGTGTGCAAACT-ATAAATTCATAATAAGTTTATGAA-TTTTGTA-TC
1 GCACTGTGTGTGCAAACTAAAAAATTC-TAATAAGTTTATGAATTTTTGTATTA
* * *
134391 GTTATTGTGTGTGCAAACTAAGAAATTCTAATAAGTTTATGAATTTTTGTATTA
1 G-CACTGTGTGTGCAAACTAAAAAATTCTAATAAGTTTATGAATTTTTGTATTA
* * *
134445 GCACTGTGTGTGCAAACTAAAAAAATTATAATAAGTTTATGAA----CGTATTG
1 GCACTGTGTGTGCAAACT-AAAAAATTCTAATAAGTTTATGAATTTTTGTATTA
* *
134495 GCACTATGTGTGCAAACT-AGAAATTCATAATAA
1 GCACTGTGTGTGCAAACTAAAAAATTC-TAATAA
134528 CT
Statistics
Matches: 117, Mismatches: 14, Indels: 14
0.81 0.10 0.10
Matches are distributed among these distances:
48 6 0.05
49 6 0.05
50 22 0.19
51 1 0.01
52 29 0.25
53 29 0.25
54 24 0.21
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (53 bp):
GCACTGTGTGTGCAAACTAAAAAATTCTAATAAGTTTATGAATTTTTGTATTA
Done.