Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005683.1 Hibiscus syriacus cultivar Beakdansim tig00013289_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55127

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1257--1451
107
1.8
107
87
5
295
32
14
24
28
1.95
2381--2428
22
2.1
23
84
3
62
52
16
0
31
1.45
3863--3974
26
4.4
26
85
4
156
11
13
46
28
1.78
3861--3974
52
2.2
50
90
3
174
11
13
46
28
1.77
4167--4239
6
12.3
6
73
12
53
49
1
0
49
1.09
5319--5426
37
3.1
34
77
5
90
30
14
12
42
1.82
5327--5581
68
3.7
66
77
10
221
29
15
13
41
1.85
6266--6549
123
2.3
121
86
4
417
32
21
17
28
1.96
7163--7206
11
4.2
10
82
8
52
70
4
11
13
1.31
7163--7203
21
1.9
21
90
5
64
68
4
12
14
1.36
11492--11556
1
65.0
1
79
0
58
0
4
7
87
0.66
11493--11556
25
2.6
24
83
16
78
0
4
7
87
0.66
11494--11557
23
2.7
22
86
13
83
0
4
9
85
0.72
17104--17144
11
3.8
10
82
17
55
19
4
0
75
0.98
17089--17145
22
2.5
22
81
15
64
19
10
0
70
1.16
17104--17159
22
2.4
24
85
14
73
23
5
0
71
1.06
27626--27708
43
1.9
43
90
4
132
45
16
21
15
1.85
28518--29690
105
11.2
105
93
0
1997
33
26
18
22
1.96
31105--31160
22
2.4
22
82
14
60
25
5
0
69
1.09
31319--31358
14
2.9
15
82
14
50
22
7
0
70
1.12
31861--31894
16
2.1
16
88
0
50
58
11
14
14
1.63
34190--34229
21
1.9
21
94
0
71
30
15
7
47
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34224--34322
33
3.0
33
94
1
164
32
7
15
45
1.73
34308--34362
13
4.2
13
75
13
58
34
3
12
49
1.59
34559--34615
21
2.7
21
91
0
96
19
26
26
28
1.99
34781--34836
15
3.6
15
79
9
67
32
12
12
42
1.80
34800--34833
18
1.9
18
94
5
61
38
11
11
38
1.79
34926--34959
17
2.0
18
88
11
54
47
20
20
11
1.81
40104--40284
91
2.0
91
87
2
265
25
10
19
43
1.83
45797--46084
145
2.0
145
97
0
540
31
17
18
32
1.94
46118--46147
2
15.0
2
100
0
60
50
0
0
50
1.00
48333--48378
24
2.0
24
86
4
67
45
2
2
50
1.26

Tables:   1

The End!