genome.fa.s5685.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005685.1 Hibiscus syriacus cultivar Beakdansim tig00013296_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  155328

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3076--3161	13	7.2	12	72	22	58	29	3	36	31	1.74
3066--3162	36	2.7	36	93	1	160	27	5	36	30	1.79
8563--8592	15	2.0	15	93	0	51	50	0	26	23	1.50
8752--8839	13	7.3	12	72	23	62	29	3	36	30	1.74
8734--8837	36	2.9	36	94	1	174	27	3	37	30	1.75
22580--22617	19	2.0	20	89	5	60	65	0	18	15	1.27
26848--26895	13	3.7	12	79	17	51	4	18	2	75	1.07
27154--27192	20	1.9	21	89	5	62	66	0	17	15	1.25
28812--28848	19	1.9	19	94	0	65	37	13	5	43	1.67
29388--29443	27	2.1	26	83	3	67	16	26	0	57	1.39
31853--31909	25	2.3	25	84	3	71	61	15	12	10	1.57
37017--37047	9	3.4	9	90	0	53	0	12	0	87	0.55
40818--40847	8	3.6	8	91	8	51	0	13	0	86	0.57
40788--40847	24	2.6	23	78	5	66	6	13	1	78	1.02
44319--44491	91	1.9	91	90	0	274	21	26	22	29	1.99
49882--49911	13	2.4	13	94	5	53	43	0	30	26	1.55
58570--59152	287	2.0	291	91	4	951	43	9	22	24	1.83
64808--64861	25	2.2	25	100	0	108	40	9	20	29	1.83
69373--69409	20	1.9	20	88	5	58	5	13	2	78	1.03
69443--69491	6	8.2	6	86	8	73	0	20	0	79	0.73
78160--78211	25	2.1	25	96	0	95	36	19	28	15	1.92
78164--78220	25	2.3	25	87	6	80	36	21	26	15	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80029--80076	24	2.0	24	87	4	69	18	18	25	37	1.94
92689--92725	9	4.0	9	89	3	56	83	0	16	0	0.64
92648--92707	23	2.5	23	83	5	75	65	11	15	8	1.47
92689--92722	15	2.2	16	94	5	61	85	0	14	0	0.60
96539--96580	2	21.0	2	100	0	84	50	0	0	50	1.00
97746--97793	23	2.1	23	100	0	96	25	12	25	37	1.91
98828--98865	17	2.3	16	95	4	67	63	0	15	21	1.31
101793--101858	28	2.3	29	82	10	82	6	15	13	65	1.45
106012--106072	29	2.1	29	81	6	70	6	14	14	63	1.49
115048--115081	11	3.1	11	82	0	50	70	5	11	11	1.32
119735--119779	11	4.1	11	82	5	56	71	4	11	13	1.29
119735--119776	22	1.9	22	90	9	68	69	4	11	14	1.34
125608--125789	91	2.0	90	85	5	242	29	21	26	21	1.99
130132--130174	23	1.9	21	81	13	50	34	13	18	32	1.90
131400--131436	5	7.8	5	85	8	51	0	16	2	81	0.81
131400--131437	15	2.6	15	91	4	60	0	15	5	78	0.91
138254--138288	11	3.3	11	92	4	54	80	14	5	0	0.89
147861--147916	25	2.3	23	75	6	58	64	12	14	8	1.50
154674--154837	88	1.9	89	89	3	260	45	6	12	35	1.67

Tables:   1

The End!