Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005686.1 Hibiscus syriacus cultivar Beakdansim tig00013298_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73998

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
229--269
22
2.0
21
90
9
66
29
31
12
26
1.92
366--457
20
4.6
20
80
10
89
25
9
30
34
1.88
340--458
42
2.9
41
82
6
136
27
10
29
32
1.89
1976--2017
22
1.9
22
90
9
68
2
45
28
23
1.66
2905--2940
3
12.3
3
88
5
56
69
2
0
27
1.02
3296--3475
42
4.3
43
81
6
201
30
21
22
25
1.99
3315--3468
83
1.9
83
87
2
229
30
22
20
26
1.98
3511--3636
59
2.1
59
92
0
207
26
12
30
29
1.93
3543--3866
143
2.3
143
87
1
468
30
14
26
28
1.95
3743--3914
85
2.0
85
90
0
272
32
16
25
26
1.96
5386--5459
14
5.3
14
65
12
53
21
4
33
40
1.72
5380--5461
28
2.9
28
98
0
155
20
3
34
41
1.70
6113--6168
8
7.1
8
82
8
62
3
10
0
85
0.71
6086--6168
18
4.7
18
82
8
91
2
16
0
80
0.81
6086--6156
23
3.1
23
84
6
83
1
16
0
81
0.76
6113--6178
30
2.2
31
83
8
82
6
10
0
83
0.81
6446--6478
2
16.5
2
100
0
66
51
0
0
48
1.00
7408--7434
2
13.5
2
100
0
54
48
0
0
51
1.00
9223--9266
3
14.7
3
95
0
79
2
31
0
65
1.05
13643--13683
21
2.0
21
90
0
64
21
17
24
36
1.94
15648--15793
9
15.3
9
71
11
94
31
26
24
17
1.97
15650--15715
19
3.5
19
87
6
82
28
30
25
15
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15643--15715
28
2.6
28
86
6
94
27
28
28
15
1.96
15648--15758
47
2.3
47
87
4
152
30
27
25
17
1.97
15724--15794
29
2.4
31
76
9
85
33
25
22
18
1.96
22913--22939
14
1.9
14
100
0
54
7
22
51
18
1.70
22940--23014
29
2.5
31
80
8
93
32
28
24
16
1.96
22934--22991
9
6.1
9
82
9
62
29
31
27
12
1.92
24211--24257
22
2.0
23
84
8
60
59
0
2
38
1.09
33766--33791
11
2.4
11
100
0
52
76
7
7
7
1.15
34007--34045
2
19.5
2
100
0
78
48
0
0
51
1.00
36150--36191
21
2.0
21
90
0
66
26
21
11
40
1.88
36485--36538
23
2.3
23
100
0
108
48
12
12
25
1.78
40893--40945
24
2.2
24
83
9
65
28
1
26
43
1.65
41063--41275
103
2.1
103
94
0
372
26
13
22
37
1.92
41292--41359
23
3.0
23
88
0
91
22
26
26
25
2.00
50082--50114
3
11.0
3
100
0
66
66
0
0
33
0.92
50274--50308
2
17.5
2
100
0
70
48
0
0
51
1.00
52922--52946
7
3.6
7
100
0
50
76
0
0
24
0.80
55294--55325
17
1.9
17
93
6
57
21
0
3
75
0.95
55339--55418
39
2.0
40
92
7
137
42
1
25
31
1.63
56415--56457
21
2.0
21
81
0
50
27
27
25
18
1.98
57106--57169
23
2.8
23
85
7
85
21
28
21
28
1.99
58840--58930
18
4.9
18
83
10
96
30
29
18
20
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59957--59998
19
2.3
18
84
12
50
38
21
4
35
1.75
65797--65868
18
3.9
18
80
8
92
29
31
19
19
1.96
65793--65868
38
2.0
37
89
2
116
28
30
18
22
1.97
65793--65868
20
4.1
20
76
17
74
28
30
18
22
1.97
70744--70835
23
4.0
23
86
0
112
30
25
26
18
1.98
71293--71346
2
27.5
2
96
3
101
50
0
0
50
1.00

Tables:   1

The End!