genome.fa.s5687.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005687.1 Hibiscus syriacus cultivar Beakdansim tig00013306_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100898

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13007--13043	19	2.1	17	90	10	56	54	5	5	35	1.47
13150--13213	26	2.5	26	78	19	71	53	4	1	40	1.31
17232--17258	14	1.9	14	100	0	54	14	0	14	70	1.17
18486--18600	21	5.5	21	95	0	203	29	24	23	22	1.99
18589--18696	42	2.6	42	85	7	141	30	19	24	25	1.98
18609--18696	21	4.2	21	94	0	140	28	20	25	26	1.99
18744--18831	21	4.2	21	76	12	83	26	22	18	32	1.97
18744--18824	41	2.0	40	85	11	110	24	22	18	34	1.96
18743--18831	42	2.2	40	82	10	108	26	22	17	32	1.97
19407--19438	6	5.3	6	100	0	64	0	15	50	34	1.45
19524--19659	21	6.7	19	82	9	137	36	21	19	22	1.96
19531--19650	21	5.8	21	81	9	140	37	20	20	21	1.94
19524--19659	40	3.3	40	84	8	168	36	21	19	22	1.96
19531--19650	63	1.9	62	93	3	206	37	20	20	21	1.94
19901--19980	2	40.0	2	100	0	160	50	0	0	50	1.00
20507--20555	25	1.9	26	83	4	64	42	6	2	48	1.39
29536--29579	22	2.0	21	83	12	54	27	13	27	31	1.94
32770--32838	32	2.2	30	78	12	75	26	28	28	15	1.96
32780--32854	32	2.4	32	79	2	89	32	32	21	14	1.93
33662--33706	19	2.4	19	88	7	65	35	20	28	15	1.93
38302--38412	60	1.9	58	82	12	140	39	12	11	36	1.80
41984--42071	34	2.6	33	80	10	99	20	1	12	65	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42615--42666	21	2.5	21	80	0	68	30	21	23	25	1.99
46888--46967	16	5.0	16	92	0	133	26	28	5	40	1.77
48034--48084	15	3.3	15	78	5	66	13	3	19	62	1.46
48024--48084	31	2.0	31	93	3	106	16	3	19	60	1.49
48309--48377	10	6.7	10	76	12	59	57	23	11	7	1.58
48326--48376	16	3.2	16	85	0	66	58	25	9	5	1.52
48311--48377	26	2.6	25	81	11	82	58	23	11	5	1.56
48388--48427	20	2.0	20	100	0	80	30	15	35	20	1.93
48555--48612	24	2.4	24	97	0	107	31	22	22	24	1.99
48604--48655	11	4.6	11	73	4	50	28	23	19	28	1.98
49504--49553	24	2.1	24	84	0	64	56	16	12	16	1.68
49524--49569	14	3.3	14	84	0	65	50	21	15	13	1.78
50835--50888	21	2.4	22	79	20	67	68	0	5	25	1.11
50928--50960	2	16.5	2	100	0	66	51	0	0	48	1.00
52655--52823	37	4.8	36	74	14	165	37	12	22	27	1.90
52781--52875	50	1.9	49	91	2	154	33	10	20	35	1.87
52738--52912	85	2.0	85	87	2	251	38	9	20	31	1.85
52831--52947	36	3.3	36	84	3	148	40	10	17	31	1.84
52787--52891	50	2.1	50	83	3	131	37	11	20	30	1.88
52737--53030	121	2.4	122	92	3	484	38	10	20	31	1.86
52865--53030	86	2.0	84	89	4	253	39	9	18	33	1.82
52952--53029	36	2.2	35	90	2	120	37	10	20	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57347--57389	20	2.2	20	87	8	61	74	0	4	20	1.00
58402--58460	19	3.1	18	77	17	57	77	1	3	16	0.98
58480--58527	19	2.4	20	82	6	62	66	0	6	27	1.15
59652--59689	2	19.5	2	89	5	60	52	2	0	44	1.14
59741--59774	18	1.9	18	94	5	61	32	2	0	64	1.08
61830--61857	3	9.3	3	100	0	56	35	0	0	64	0.94
63213--63265	18	2.8	20	75	21	60	52	0	0	47	1.00
63233--63273	18	2.3	18	82	0	55	48	0	0	51	1.00
67615--67653	21	2.0	19	85	14	53	33	15	28	23	1.95
68356--69146	296	2.7	295	93	2	1343	41	6	19	33	1.76
69156--69188	13	2.4	14	90	5	50	36	0	15	48	1.45
69395--69484	32	2.9	30	81	4	108	25	18	22	33	1.97
70339--70730	208	1.9	207	92	0	658	43	17	14	25	1.86
71722--71766	3	15.0	3	90	9	74	66	0	0	33	0.92
72158--72910	139	5.4	139	80	3	751	25	15	25	33	1.95
72158--72909	277	2.7	275	80	4	803	25	15	25	33	1.95
73325--73468	67	2.1	67	89	2	218	39	9	20	29	1.85
80998--81033	11	3.4	11	96	3	65	8	25	8	58	1.55
81185--81233	19	2.7	17	84	9	53	26	20	26	26	1.99
81179--81364	65	2.9	64	80	5	196	27	19	23	29	1.98
89223--89282	23	2.6	23	83	0	75	20	21	25	33	1.97
91386--91482	2	49.5	2	95	4	180	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93264--93294	14	2.2	14	100	0	62	19	9	22	48	1.78
93326--93357	3	10.3	3	93	6	55	65	0	0	34	0.93

Tables:   1

The End!