genome.fa.s5688.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005688.1 Hibiscus syriacus cultivar Beakdansim tig00013308_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97347

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
287--318	11	2.8	12	90	9	57	6	31	28	34	1.82
9466--9511	22	2.1	22	95	0	83	39	21	0	39	1.54
15349--15415	31	2.2	29	82	12	82	31	16	4	47	1.66
26707--26802	43	2.2	43	78	14	108	29	19	15	35	1.93
27485--27567	43	2.0	42	83	4	105	24	25	16	33	1.96
27551--27685	20	6.8	20	79	6	139	32	21	20	25	1.97
27551--27690	40	3.5	40	85	2	174	32	20	20	26	1.97
27548--27690	60	2.4	61	78	11	168	32	20	19	27	1.97
28501--28554	24	2.2	24	93	0	90	20	18	20	40	1.91
30807--30841	18	1.9	18	94	0	61	54	25	2	17	1.57
31019--31313	20	15.7	20	75	13	225	35	21	20	22	1.96
31394--31473	30	2.4	34	80	20	114	55	15	3	26	1.57
31409--31474	30	2.2	30	100	0	132	54	13	3	28	1.54
32901--32945	21	2.3	18	81	11	54	24	11	42	22	1.86
33463--33539	20	3.8	20	87	1	100	40	25	15	18	1.90
33582--33646	20	3.2	20	91	0	103	16	18	26	38	1.92
33797--33846	18	2.8	18	100	0	100	42	6	20	32	1.76
35531--35637	20	5.4	20	82	3	92	45	21	16	15	1.85
36014--36066	22	2.4	22	83	0	70	20	18	37	22	1.94
36232--36427	20	9.6	20	75	9	128	28	20	23	27	1.99
36232--36427	40	4.9	38	80	8	176	28	20	23	27	1.99
37865--37896	14	2.4	13	94	5	55	0	28	6	65	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46375--46415	21	2.0	21	85	0	55	14	17	31	36	1.90
46989--47027	2	19.5	2	100	0	78	51	0	0	48	1.00
48263--48304	17	2.4	18	84	11	61	59	0	0	40	0.97
58576--58644	24	2.9	24	88	0	102	27	15	27	28	1.96
59305--59366	31	2.0	31	87	6	90	40	12	20	25	1.89
67971--67995	13	1.9	13	100	0	50	12	24	8	56	1.62
72058--72164	55	1.9	56	98	1	207	42	29	7	20	1.80
77172--77226	14	3.5	17	80	14	73	58	0	5	36	1.21
79802--79863	27	2.3	26	82	17	81	53	1	0	45	1.10
79816--79864	13	3.5	15	75	13	59	53	0	0	46	1.00
79873--79924	26	2.0	26	92	0	86	53	9	5	30	1.57
80394--80432	20	2.0	20	84	0	51	46	12	10	30	1.75
83633--83675	13	3.3	13	80	0	59	41	20	20	16	1.90
86483--86546	32	2.0	33	87	9	96	25	17	9	48	1.76
89709--89748	21	1.9	21	89	0	62	30	37	25	7	1.83

Tables:   1

The End!