Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005689.1 Hibiscus syriacus cultivar Beakdansim tig00013309_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81792
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Found at i:831 original size:23 final size:23
Alignment explanation
Indices: 804--895 Score: 112
Period size: 23 Copynumber: 4.0 Consensus size: 23
794 AGACATTATA
*
804 TGGCACTACGGTGCATTTCTATG
1 TGGCACTACGGTGCATTTCTACG
* * *
827 CGGCACTTCGGTGCAATTCTACG
1 TGGCACTACGGTGCATTTCTACG
*
850 TGGCACTACGGTTCATTTCTACG
1 TGGCACTACGGTGCATTTCTACG
* * *
873 TAGCACTTCGGTGCATTTATACG
1 TGGCACTACGGTGCATTTCTACG
896 AGCTGTGGTG
Statistics
Matches: 57, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 57 1.00
ACGTcount: A:0.18, C:0.25, G:0.24, T:0.33
Consensus pattern (23 bp):
TGGCACTACGGTGCATTTCTACG
Found at i:8231 original size:3 final size:3
Alignment explanation
Indices: 8136--8213 Score: 140
Period size: 3 Copynumber: 26.3 Consensus size: 3
8126 TCCATTTGAT
8136 TTA TTA TTA TTA TTA -TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
8183 TTA TTA TTA TTA TCA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
8214 AAATAAAAAA
Statistics
Matches: 72, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
2 2 0.03
3 70 0.97
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:10004 original size:2 final size:2
Alignment explanation
Indices: 9997--10024 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
9987 ATTTATAAAA
9997 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10025 TCTTAAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10561 original size:24 final size:24
Alignment explanation
Indices: 10534--10598 Score: 71
Period size: 24 Copynumber: 2.7 Consensus size: 24
10524 CATTTCTATA
10534 TATACTTATTATTTTCA-TAATATT
1 TATA-TTATTATTTTCATTAATATT
*
10558 TATATATATTATTTTTTATTAATATT
1 TATAT-TATTA-TTTTCATTAATATT
*
10584 TTTATT-TTATTTTCA
1 TATATTATTATTTTCA
10599 AGTATTAAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
23 6 0.17
24 12 0.34
25 6 0.17
26 11 0.31
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.65
Consensus pattern (24 bp):
TATATTATTATTTTCATTAATATT
Found at i:10574 original size:26 final size:26
Alignment explanation
Indices: 10530--10596 Score: 77
Period size: 26 Copynumber: 2.6 Consensus size: 26
10520 TCAACATTTC
10530 TATATATACTTATTATTTTCA-TAATATT
1 TATATATA-TTATT-TTTT-ATTAATATT
10558 TATATATATTATTTTTTATTAATATT
1 TATATATATTATTTTTTATTAATATT
*
10584 T-T-TATTTTATTTT
1 TATATATATTATTTT
10597 CAAGTATTAA
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
24 10 0.27
25 2 0.05
26 12 0.32
27 5 0.14
28 8 0.22
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (26 bp):
TATATATATTATTTTTTATTAATATT
Found at i:13897 original size:15 final size:15
Alignment explanation
Indices: 13877--13908 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
13867 GATCAATACC
13877 TTTTGCATACATTCA
1 TTTTGCATACATTCA
13892 TTTTGCATACATTCA
1 TTTTGCATACATTCA
13907 TT
1 TT
13909 GCATTATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.25, C:0.19, G:0.06, T:0.50
Consensus pattern (15 bp):
TTTTGCATACATTCA
Found at i:22345 original size:25 final size:22
Alignment explanation
Indices: 22289--22342 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
22279 ACATCTATAT
22289 TCTTCAAAGATAATAGATTCTC
1 TCTTCAAAGATAATAGATTCTC
*
22311 TCTTCAAAGATGATAGATTCTC
1 TCTTCAAAGATAATAGATTCTC
*
22333 TTTTCAAAGA
1 TCTTCAAAGA
22343 AGAAAGATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.35, C:0.17, G:0.11, T:0.37
Consensus pattern (22 bp):
TCTTCAAAGATAATAGATTCTC
Found at i:22350 original size:22 final size:22
Alignment explanation
Indices: 22289--22351 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 22
22279 ACATCTATAT
*
22289 TCTTCAAAGATA-ATAGATTCTC
1 TCTTCAAAGA-AGAAAGATTCTC
* *
22311 TCTTCAAAGATGATAGATTCTC
1 TCTTCAAAGAAGAAAGATTCTC
*
22333 TTTTCAAAGAAGAAAGATT
1 TCTTCAAAGAAGAAAGATT
22352 TATTGGATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.35
Consensus pattern (22 bp):
TCTTCAAAGAAGAAAGATTCTC
Found at i:22614 original size:40 final size:40
Alignment explanation
Indices: 22559--22655 Score: 176
Period size: 40 Copynumber: 2.4 Consensus size: 40
22549 CAGGTAGAGC
*
22559 TCATAATGAGAAGAACTCATCTGAAGAAGGAATAAGAAGT
1 TCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGT
*
22599 TCATAATGAGAAGAACTCGTCTGAAGAAGGAAGAAGAAGT
1 TCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGT
22639 TCATAATGAGAAGAACT
1 TCATAATGAGAAGAACT
22656 TGTTCAGCCT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.46, C:0.10, G:0.24, T:0.20
Consensus pattern (40 bp):
TCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGT
Found at i:22834 original size:122 final size:124
Alignment explanation
Indices: 22599--22836 Score: 347
Period size: 122 Copynumber: 1.9 Consensus size: 124
22589 AATAAGAAGT
* * *
22599 TCATAATGAGAAGAACTCGTCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAGC
1 TCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAAAAGAACTTGTTCAAC
* * * *
22664 CTTTTGCTCTACTCTATCGCAGAAGGAGATAGATCATCATCAATATTTCCAGAGAAAGC
66 CTTTTGCTCGACTCTATCACAGAAGGAGATAGATCAACATCAACATTTCCAGAGAAAGC
* *
22723 TCATAATGAGAAGAACTTATCTGAAG-AGGAAGAAGAAGTTCATAATGAAAAGAACTTGTTTAAC
1 TCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAAAAGAACTTGTTCAAC
* *
22787 C-TTTGCAT-GACTCTATTATAGAAGGAGATAGATCAACATCAACATTTCCA
66 CTTTTGC-TCGACTCTATCACAGAAGGAGATAGATCAACATCAACATTTCCA
22837 AAAGTGTTCA
Statistics
Matches: 102, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
122 41 0.40
123 37 0.36
124 24 0.24
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.26
Consensus pattern (124 bp):
TCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAAAAGAACTTGTTCAAC
CTTTTGCTCGACTCTATCACAGAAGGAGATAGATCAACATCAACATTTCCAGAGAAAGC
Found at i:22886 original size:122 final size:123
Alignment explanation
Indices: 22599--22878 Score: 302
Period size: 122 Copynumber: 2.3 Consensus size: 123
22589 AATAAGAAGT
** ** * * *
22599 TCATAATGAGAAGAACTCGTCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAGC
1 TCATAATGAGAAGAACTAATCCCAAG-AGAAAGAAGAAGTTCATAATGAAAAGAACTTGTTCAAC
* * * *
22664 CTTTTGCTCTACTCTATCGCAGAAGGAGATAGATCATCATCAATATTTCCAGAGAAAGC
65 CTTTTGCTCGACTCTATCACAGAAGGAGATAGATCAACATCAACATTTCCAGAGAAAGC
* ** * *
22723 TCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAAAAGAACTTGTTTAACC
1 TCATAATGAGAAGAACTAATCCCAAGAGAAAGAAGAAGTTCATAATGAAAAGAACTTGTTCAACC
* * * *
22788 -TTTGCAT-GACTCTATTATAGAAGGAGATAGATCAACATCAACATTTCCA-A-AAGTGT
66 TTTTGC-TCGACTCTATCACAGAAGGAGATAGATCAACATCAACATTTCCAGAGAA-AGC
*
22844 TCATAGTGAGAAGAACTAATCCCAA-A-AAAGAAGAA
1 TCATAATGAGAAGAACTAATCCCAAGAGAAAGAAGAA
22879 TTTGTTCAAA
Statistics
Matches: 136, Mismatches: 18, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
119 8 0.06
120 3 0.02
121 23 0.17
122 41 0.30
123 37 0.27
124 24 0.18
ACGTcount: A:0.41, C:0.15, G:0.19, T:0.25
Consensus pattern (123 bp):
TCATAATGAGAAGAACTAATCCCAAGAGAAAGAAGAAGTTCATAATGAAAAGAACTTGTTCAACC
TTTTGCTCGACTCTATCACAGAAGGAGATAGATCAACATCAACATTTCCAGAGAAAGC
Found at i:23011 original size:17 final size:17
Alignment explanation
Indices: 22953--23012 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
22943 CAGCATTTCT
*
22953 AGAAGGAGTTCATAATG
1 AGAAGAAGTTCATAATG
* **
22970 AGAAGAA-CTCATCTAAAAA
1 AGAAGAAGTTCA--T-AATG
22989 AGAAGAAGTTCATAATG
1 AGAAGAAGTTCATAATG
23006 AGAAGAA
1 AGAAGAA
23013 TTTTTTCAAC
Statistics
Matches: 32, Mismatches: 7, Indels: 8
0.68 0.15 0.17
Matches are distributed among these distances:
16 3 0.09
17 15 0.47
18 2 0.06
19 9 0.28
20 3 0.09
ACGTcount: A:0.52, C:0.08, G:0.22, T:0.18
Consensus pattern (17 bp):
AGAAGAAGTTCATAATG
Found at i:23265 original size:3 final size:3
Alignment explanation
Indices: 23259--23317 Score: 91
Period size: 3 Copynumber: 19.7 Consensus size: 3
23249 TCCATTTGAT
* * *
23259 TTA TTA TTA TTA TTA TTA TTA TTA TGA TCA TCA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
23307 TTA TTA TTA TT
1 TTA TTA TTA TT
23318 TATTTACATT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:25096 original size:148 final size:148
Alignment explanation
Indices: 24820--25097 Score: 391
Period size: 148 Copynumber: 1.9 Consensus size: 148
24810 AAAAATAATC
* * *
24820 ATATTTTTTTATTTTTTAATATTAAGAAATTGGCTGTCTTAAAGCACCTAGAAGTCCTTTTATGA
1 ATATTTATTTATTTTTTAATATTAAGAAATGGGATGTCTTAAAGCACCTAGAAGTCCTTTTATGA
* * * * * *
24885 TATTCTCAAATAAATAAATATCATATTTTTATAAATTATATATATTAATTTATTTTAATTATTTT
66 TATTCTCAAATAAATAAATATCATATTTATAAAAATAAGATATATTAATATATATTAATTATTTT
24950 TAGAAAAATATTTTATTA
131 TAGAAAAATATTTTATTA
* *
24968 ATATTTATTTATTTTTTAATATTAAGAAATGGGATGTCTTAAAGCACCTAGAAGTCCTTTTCTTA
1 ATATTTATTTATTTTTTAATATTAAGAAATGGGATGTCTTAAAGCACCTAGAAGTCCTTTTATGA
* *
25033 TATT-TATAAATAAATAAATATCTTATTTATAAAAATAAAGATATA-T-ATATATATTAATATAT
66 TATTCT-CAAATAAATAAATATCATATTTATAAAAAT-AAGATATATTAATATATATTAAT-TAT
25095 TTT
128 TTT
25098 CTTAAAATTA
Statistics
Matches: 114, Mismatches: 13, Indels: 6
0.86 0.10 0.05
Matches are distributed among these distances:
147 11 0.10
148 97 0.85
149 6 0.05
ACGTcount: A:0.40, C:0.06, G:0.06, T:0.47
Consensus pattern (148 bp):
ATATTTATTTATTTTTTAATATTAAGAAATGGGATGTCTTAAAGCACCTAGAAGTCCTTTTATGA
TATTCTCAAATAAATAAATATCATATTTATAAAAATAAGATATATTAATATATATTAATTATTTT
TAGAAAAATATTTTATTA
Found at i:27065 original size:29 final size:29
Alignment explanation
Indices: 27030--27111 Score: 137
Period size: 29 Copynumber: 2.8 Consensus size: 29
27020 AAACTAAATT
*
27030 GATGTCATTACTTACATCATTTAATTAAA
1 GATGTCATTGCTTACATCATTTAATTAAA
*
27059 GATGTCATTGCTTACATCATTTAATTAAT
1 GATGTCATTGCTTACATCATTTAATTAAA
27088 GATGTCATTGCTTACATCAATTTA
1 GATGTCATTGCTTACATC-ATTTA
27112 GTTAGGTGAG
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
29 45 0.90
30 5 0.10
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.43
Consensus pattern (29 bp):
GATGTCATTGCTTACATCATTTAATTAAA
Found at i:28372 original size:24 final size:24
Alignment explanation
Indices: 28345--28395 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
28335 AACGTGGCCA
*
28345 AGGTAGAGGTAGAGGCCATGGACG
1 AGGTAGAAGTAGAGGCCATGGACG
* * * *
28369 AGGTGGAAGTCGAGGTCGTGGACG
1 AGGTAGAAGTAGAGGCCATGGACG
28393 AGG
1 AGG
28396 CTGGAATTAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.25, C:0.12, G:0.49, T:0.14
Consensus pattern (24 bp):
AGGTAGAAGTAGAGGCCATGGACG
Found at i:28423 original size:15 final size:15
Alignment explanation
Indices: 28400--28429 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
28390 ACGAGGCTGG
28400 AATTACAACAATAAC
1 AATTACAACAATAAC
*
28415 AATTCCAACAATAAC
1 AATTACAACAATAAC
28430 TATGAGAAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.23, G:0.00, T:0.20
Consensus pattern (15 bp):
AATTACAACAATAAC
Found at i:31833 original size:29 final size:29
Alignment explanation
Indices: 31798--31879 Score: 137
Period size: 29 Copynumber: 2.8 Consensus size: 29
31788 AAACTAAATT
*
31798 GATGTCATTACTTACATCATTTAATTAAA
1 GATGTCATTGCTTACATCATTTAATTAAA
*
31827 GATGTCATTGCTTACATCATTTAATTAAT
1 GATGTCATTGCTTACATCATTTAATTAAA
31856 GATGTCATTGCTTACATCAATTTA
1 GATGTCATTGCTTACATC-ATTTA
31880 GTTAGGTGAT
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
29 45 0.90
30 5 0.10
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.43
Consensus pattern (29 bp):
GATGTCATTGCTTACATCATTTAATTAAA
Found at i:37360 original size:6 final size:6
Alignment explanation
Indices: 37349--37375 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
37339 GTCTGTCTCG
37349 GGTCGT GGTCGT GGTCGT GGTCGT GGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGT
37376 AATGGTAATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.15, G:0.52, T:0.33
Consensus pattern (6 bp):
GGTCGT
Found at i:37505 original size:21 final size:21
Alignment explanation
Indices: 37480--37705 Score: 371
Period size: 21 Copynumber: 10.8 Consensus size: 21
37470 TGCAATTTTG
37480 GACTATCGCAACGAACTTGGA
1 GACTATCGCAACGAACTTGGA
* *
37501 GACTATCGCAATGAATTTGGA
1 GACTATCGCAACGAACTTGGA
* *
37522 GACTACCGCAACGAATTTGGA
1 GACTATCGCAACGAACTTGGA
37543 GACTATCGCAACGAACTTGGA
1 GACTATCGCAACGAACTTGGA
37564 GACTATCGCAACGAACTTGGA
1 GACTATCGCAACGAACTTGGA
*
37585 GACTATCGCAACGAATTTGGA
1 GACTATCGCAACGAACTTGGA
37606 GACTATCGCAACGAACTTGGA
1 GACTATCGCAACGAACTTGGA
*
37627 GACTATCGCAACGAATTTGGA
1 GACTATCGCAACGAACTTGGA
* *
37648 GACTACCGCAACGAACTTAGA
1 GACTATCGCAACGAACTTGGA
*
37669 GACTATCGCAACGAATTTGGA
1 GACTATCGCAACGAACTTGGA
37690 GACTATCGCAACGAAC
1 GACTATCGCAACGAAC
37706 GAACTTGGAG
Statistics
Matches: 189, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 189 1.00
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (21 bp):
GACTATCGCAACGAACTTGGA
Found at i:37532 original size:42 final size:42
Alignment explanation
Indices: 37480--37733 Score: 400
Period size: 42 Copynumber: 6.0 Consensus size: 42
37470 TGCAATTTTG
*
37480 GACTATCGCAACGAACTTGGAGACTATCGCAATGAATTTGGA
1 GACTATCGCAACGAACTTGGAGACTATCGCAACGAATTTGGA
* * *
37522 GACTACCGCAACGAATTTGGAGACTATCGCAACGAACTTGGA
1 GACTATCGCAACGAACTTGGAGACTATCGCAACGAATTTGGA
37564 GACTATCGCAACGAACTTGGAGACTATCGCAACGAATTTGGA
1 GACTATCGCAACGAACTTGGAGACTATCGCAACGAATTTGGA
37606 GACTATCGCAACGAACTTGGAGACTATCGCAACGAATTTGGA
1 GACTATCGCAACGAACTTGGAGACTATCGCAACGAATTTGGA
* *
37648 GACTACCGCAACGAACTTAGAGACTATCGCAACGAATTTGGA
1 GACTATCGCAACGAACTTGGAGACTATCGCAACGAATTTGGA
* *
37690 GACTATCGCAACGAACGAACTTGGAGACTAGCGCAACAAATTTG
1 GACTATCG---C-AACGAACTTGGAGACTATCGCAACGAATTTG
37734 TAATAAATCG
Statistics
Matches: 195, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
42 166 0.85
45 1 0.01
46 28 0.14
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.20
Consensus pattern (42 bp):
GACTATCGCAACGAACTTGGAGACTATCGCAACGAATTTGGA
Found at i:37774 original size:42 final size:42
Alignment explanation
Indices: 37543--37850 Score: 225
Period size: 42 Copynumber: 7.3 Consensus size: 42
37533 CGAATTTGGA
*
37543 GACTATCGCAACGAACTTGGAGACT--ATCGCAA--CGAACTTGG
1 GACTATCGCAACGAATTTGGA-A-TAAATCGCAACGCGAACTT-G
37584 AGACTATCGCAACGAATTTGGAGACT--ATCGCAA--CGAACTTGG
1 -GACTATCGCAACGAATTTGGA-A-TAAATCGCAACGCGAACTT-G
*
37626 AGACTATCGCAACGAATTTGGAGACT--ACCGCAA--CGAACTTAG
1 -GACTATCGCAACGAATTTGGA-A-TAAATCGCAACGCGAACTT-G
37668 AGACTATCGCAACGAATTTGGAGACT--ATCGCAACGAACGAACTTGG
1 -GACTATCGCAACGAATTTGGA-A-TAAATCGCAACG--CGAACTT-G
* * * **
37714 AGACTAGCGCAACAAATTTGTAATAAATCGTGACGCGAACTTG
1 -GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTG
* *
37757 GACTATCGCAACGAATTTGGAATAAATCGCAATGCAAACTTG
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTG
* * *
37799 GACTATCGCAATGAATTTGG-A-AAATCACAACGCGAACTTC
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTG
*
37839 AACTATCGCAAC
1 GACTATCGCAAC
37851 ACGAACTTGG
Statistics
Matches: 236, Mismatches: 24, Indels: 14
0.86 0.09 0.05
Matches are distributed among these distances:
40 25 0.11
41 1 0.00
42 166 0.70
43 1 0.00
44 8 0.03
45 1 0.00
46 34 0.14
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21
Consensus pattern (42 bp):
GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTG
Found at i:37806 original size:21 final size:21
Alignment explanation
Indices: 37477--37876 Score: 114
Period size: 21 Copynumber: 19.0 Consensus size: 21
37467 CGTTGCAATT
37477 TTGGACTATCGCAA--CGAAC
1 TTGGACTATCGCAATGCGAAC
*
37496 TTGGAGACTATCGCAAT--GAAT
1 TT-G-GACTATCGCAATGCGAAC
* *
37517 TTGGAGACTACCGCAA--CGAAT
1 TT-G-GACTATCGCAATGCGAAC
37538 TTGGAGACTATCGCAA--CGAAC
1 TT-G-GACTATCGCAATGCGAAC
37559 TTGGAGACTATCGCAA--CGAAC
1 TT-G-GACTATCGCAATGCGAAC
*
37580 TTGGAGACTATCGCAA--CGAAT
1 TT-G-GACTATCGCAATGCGAAC
37601 TTGGAGACTATCGCAA--CGAAC
1 TT-G-GACTATCGCAATGCGAAC
*
37622 TTGGAGACTATCGCAA--CGAAT
1 TT-G-GACTATCGCAATGCGAAC
*
37643 TTGGAGACTACCGCAA--CGAAC
1 TT-G-GACTATCGCAATGCGAAC
*
37664 TTAGAGACTATCGCAA--CGAAT
1 TT-G-GACTATCGCAATGCGAAC
*
37685 TTGGAGACTATCGCAACGAACGAAC
1 TT-G-GACTATCGCAATG--CGAAC
* * *
37710 TTGGAGACTAGCGCAA--CAAAT
1 TT-G-GACTATCGCAATGCGAAC
* * ** *
37731 TTGTAATAAATCGTGACGCGAAC
1 TTGGACT--ATCGCAATGCGAAC
*
37754 TTGGACTATCGCAA--CGAAT
1 TTGGACTATCGCAATGCGAAC
* *
37773 TTGGAATAAATCGCAATGCAAAC
1 TTGGACT--ATCGCAATGCGAAC
*
37796 TTGGACTATCGCAAT--GAAT
1 TTGGACTATCGCAATGCGAAC
** * *
37815 TTGGAAAATCACAACGCGAAC
1 TTGGACTATCGCAATGCGAAC
** **
37836 TTCAACTATCGCAACACGAAC
1 TTGGACTATCGCAATGCGAAC
37857 TTGGACTATCGCAATGCGAA
1 TTGGACTATCGCAATGCGAA
37877 TATGTAAATC
Statistics
Matches: 313, Mismatches: 50, Indels: 34
0.79 0.13 0.09
Matches are distributed among these distances:
19 27 0.09
20 2 0.01
21 248 0.79
23 17 0.05
25 19 0.06
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.21
Consensus pattern (21 bp):
TTGGACTATCGCAATGCGAAC
Found at i:38372 original size:19 final size:21
Alignment explanation
Indices: 38314--38372 Score: 59
Period size: 19 Copynumber: 2.8 Consensus size: 21
38304 TCAATGGATT
38314 TAATTTTAAAGATTTTTTTAAACA
1 TAATTTTAAAGA---TTTTAAACA
*
38338 TAATTTTAAAGGTTTTAAA-A
1 TAATTTTAAAGATTTTAAACA
*
38358 -AATTTTAAATATTTT
1 TAATTTTAAAGATTTT
38373 CAAATATTAG
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
19 13 0.41
20 1 0.03
21 7 0.22
24 11 0.34
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.51
Consensus pattern (21 bp):
TAATTTTAAAGATTTTAAACA
Found at i:46307 original size:64 final size:65
Alignment explanation
Indices: 46170--46330 Score: 159
Period size: 64 Copynumber: 2.5 Consensus size: 65
46160 AATTGTTCAG
* * * *
46170 TGTGTATCGATGCA-CAGGAAGTGCATCGATGCACCTATTAAAAATGGAAACATCGAATGCAATT
1 TGTGTATCGATGCATAAGGAAGTGCATCGATGCACCCATTAAAAATGAAAACATCGAAGGCAATT
* * * * * **
46234 AGTGCATCGATGCATAAGG-AGTGCATCGATGTACCCCCTT-AAAATTAAAACATCGAAGGTGAT
1 TGTGTATCGATGCATAAGGAAGTGCATCGATGCA-CCCATTAAAAATGAAAACATCGAAGGCAAT
46297 T
65 T
* * *
46298 TGTGTATCGATGCAT-GGGTAGTGTATCGATGCA
1 TGTGTATCGATGCATAAGGAAGTGCATCGATGCA
46331 TGGGTAGTGT
Statistics
Matches: 78, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
63 2 0.03
64 69 0.88
65 7 0.09
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (65 bp):
TGTGTATCGATGCATAAGGAAGTGCATCGATGCACCCATTAAAAATGAAAACATCGAAGGCAATT
Found at i:46323 original size:19 final size:19
Alignment explanation
Indices: 46299--46347 Score: 98
Period size: 19 Copynumber: 2.6 Consensus size: 19
46289 AAGGTGATTT
46299 GTGTATCGATGCATGGGTA
1 GTGTATCGATGCATGGGTA
46318 GTGTATCGATGCATGGGTA
1 GTGTATCGATGCATGGGTA
46337 GTGTATCGATG
1 GTGTATCGATG
46348 TATATGTTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.20, C:0.10, G:0.37, T:0.33
Consensus pattern (19 bp):
GTGTATCGATGCATGGGTA
Found at i:47315 original size:2 final size:2
Alignment explanation
Indices: 47308--47369 Score: 92
Period size: 2 Copynumber: 31.0 Consensus size: 2
47298 GTATTTGCGG
47308 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
47350 AT GA- AT A- AT AT AT GAT AT AT
1 AT -AT AT AT AT AT AT -AT AT AT
47370 GTTTATGTAA
Statistics
Matches: 56, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.04
2 51 0.91
3 3 0.05
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:47870 original size:45 final size:46
Alignment explanation
Indices: 47821--47910 Score: 110
Period size: 46 Copynumber: 2.0 Consensus size: 46
47811 TTAAGGAATT
* * * *
47821 TTCTACGTGGTCCTTAGGGAC-ATTTTATATGGCACTTCGGTGCAA
1 TTCTACGCGGTACTTAGGGACAATTCTACATGGCACTTCGGTGCAA
* **
47866 TTCTACGCGGTACTTCGGTTCAATTCTACATGGCACTTCGGTGCA
1 TTCTACGCGGTACTTAGGGACAATTCTACATGGCACTTCGGTGCA
47911 TTTATACGAG
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
45 16 0.43
46 21 0.57
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.34
Consensus pattern (46 bp):
TTCTACGCGGTACTTAGGGACAATTCTACATGGCACTTCGGTGCAA
Found at i:47884 original size:23 final size:23
Alignment explanation
Indices: 47851--47910 Score: 84
Period size: 23 Copynumber: 2.6 Consensus size: 23
47841 CATTTTATAT
*
47851 GGCACTTCGGTGCAATTCTACGC
1 GGCACTTCGGTGCAATTCTACAC
* * *
47874 GGTACTTCGGTTCAATTCTACAT
1 GGCACTTCGGTGCAATTCTACAC
47897 GGCACTTCGGTGCA
1 GGCACTTCGGTGCA
47911 TTTATACGAG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.18, C:0.27, G:0.25, T:0.30
Consensus pattern (23 bp):
GGCACTTCGGTGCAATTCTACAC
Found at i:48340 original size:12 final size:12
Alignment explanation
Indices: 48305--48343 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 12
48295 GAGATTTAAA
48305 ATAATGTGTGATAT
1 ATAATGT-T-ATAT
48319 ATATATGTTATAT
1 ATA-ATGTTATAT
48332 ATAATGTTATAT
1 ATAATGTTATAT
48344 TGTTTTGATG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 9 0.38
13 7 0.29
14 4 0.17
15 4 0.17
ACGTcount: A:0.38, C:0.00, G:0.13, T:0.49
Consensus pattern (12 bp):
ATAATGTTATAT
Found at i:49868 original size:13 final size:13
Alignment explanation
Indices: 49830--49872 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
49820 ATTTTAAAAA
*
49830 ATAATTAAAAAAT
1 ATAATTAAAATAT
*
49843 -TAATATTAAATAT
1 ATAAT-TAAAATAT
49856 ATAATTAAAATAT
1 ATAATTAAAATAT
49869 ATAA
1 ATAA
49873 CATTCAGTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
12 4 0.16
13 17 0.68
14 4 0.16
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (13 bp):
ATAATTAAAATAT
Found at i:49971 original size:20 final size:20
Alignment explanation
Indices: 49948--49989 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
49938 ATAATTTTCC
*
49948 ATTAAATATAATATAAAAAT
1 ATTAAACATAATATAAAAAT
*
49968 ATTAAACATTATATAAAAAT
1 ATTAAACATAATATAAAAAT
49988 AT
1 AT
49990 AGGGTAAATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (20 bp):
ATTAAACATAATATAAAAAT
Found at i:50875 original size:20 final size:20
Alignment explanation
Indices: 50850--50921 Score: 89
Period size: 20 Copynumber: 3.8 Consensus size: 20
50840 CCCAAAAAAT
50850 ATAATATAAAAACATTAAAC
1 ATAATATAAAAACATTAAAC
50870 ATAATATAAAAACA-TAAA-
1 ATAATATAAAAACATTAAAC
* *
50888 A-ACTA-AATAACATTAAAC
1 ATAATATAAAAACATTAAAC
50906 ATAAATATAAAAACAT
1 AT-AATATAAAAACAT
50922 CACATCTAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
16 6 0.14
17 7 0.16
18 2 0.05
19 4 0.09
20 17 0.40
21 7 0.16
ACGTcount: A:0.67, C:0.10, G:0.00, T:0.24
Consensus pattern (20 bp):
ATAATATAAAAACATTAAAC
Found at i:54779 original size:23 final size:23
Alignment explanation
Indices: 54746--54813 Score: 91
Period size: 23 Copynumber: 3.0 Consensus size: 23
54736 ATTATTATAT
54746 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTCTACGC
* * *
54769 GGCACTCCGGTGTAATTCTACGT
1 GGCACTACGGTGCAATTCTACGC
* *
54792 GGCACTTCGGTGCAATTATACG
1 GGCACTACGGTGCAATTCTACG
54814 AGCTATGGTG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.21, C:0.26, G:0.26, T:0.26
Consensus pattern (23 bp):
GGCACTACGGTGCAATTCTACGC
Found at i:58049 original size:21 final size:21
Alignment explanation
Indices: 58007--58049 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
57997 TTTCTGGGCT
* * *
58007 AGGGGAATCGGTACCCATTCA
1 AGGGGAACCGATACCCACTCA
*
58028 AGGGGAACCGATACCCCCTCA
1 AGGGGAACCGATACCCACTCA
58049 A
1 A
58050 ACGAACCAGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.30, G:0.26, T:0.14
Consensus pattern (21 bp):
AGGGGAACCGATACCCACTCA
Found at i:59702 original size:23 final size:23
Alignment explanation
Indices: 59668--59735 Score: 77
Period size: 23 Copynumber: 3.0 Consensus size: 23
59658 ATTATTATAT
59668 GGCACTAC-GGTGCAATTCTACGC
1 GGCACT-CTGGTGCAATTCTACGC
* *
59691 GGCACTCTGGTGTAATTCTACGT
1 GGCACTCTGGTGCAATTCTACGC
*
59714 GGCACT-TCGGTGCAATTATACG
1 GGCACTCT-GGTGCAATTCTACG
59736 AGCTGTAGTG
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
22 2 0.05
23 37 0.95
ACGTcount: A:0.21, C:0.25, G:0.26, T:0.28
Consensus pattern (23 bp):
GGCACTCTGGTGCAATTCTACGC
Found at i:62391 original size:19 final size:19
Alignment explanation
Indices: 62364--62436 Score: 56
Period size: 19 Copynumber: 3.5 Consensus size: 19
62354 AGTTTGGGAT
*
62364 TTGATTTTGGTTTGATTCG
1 TTGAATTTGGTTTGATTCG
* *
62383 TTGAATTTGGATTTAAGTTTGGG
1 TTGAATTTGG-TTT--GATT-CG
*
62406 ATTTGATTTTGGTTTGATTCG
1 --TTGAATTTGGTTTGATTCG
62427 TTGAATTTGG
1 TTGAATTTGG
62437 ATTTATAAGT
Statistics
Matches: 41, Mismatches: 7, Indels: 12
0.68 0.12 0.20
Matches are distributed among these distances:
19 18 0.44
20 3 0.07
21 1 0.02
22 6 0.15
23 1 0.02
24 3 0.07
25 9 0.22
ACGTcount: A:0.16, C:0.03, G:0.27, T:0.53
Consensus pattern (19 bp):
TTGAATTTGGTTTGATTCG
Found at i:62409 original size:44 final size:44
Alignment explanation
Indices: 62346--62441 Score: 192
Period size: 44 Copynumber: 2.2 Consensus size: 44
62336 TTGTAATAAG
62346 TGGATTTAAGTTTGGGATTTGATTTTGGTTTGATTCGTTGAATT
1 TGGATTTAAGTTTGGGATTTGATTTTGGTTTGATTCGTTGAATT
62390 TGGATTTAAGTTTGGGATTTGATTTTGGTTTGATTCGTTGAATT
1 TGGATTTAAGTTTGGGATTTGATTTTGGTTTGATTCGTTGAATT
62434 TGGATTTA
1 TGGATTTA
62442 TAAGTATGAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 52 1.00
ACGTcount: A:0.19, C:0.02, G:0.27, T:0.52
Consensus pattern (44 bp):
TGGATTTAAGTTTGGGATTTGATTTTGGTTTGATTCGTTGAATT
Found at i:69613 original size:46 final size:46
Alignment explanation
Indices: 69526--69613 Score: 131
Period size: 46 Copynumber: 1.9 Consensus size: 46
69516 TCATGTGGCC
* **
69526 TTAGTGACGATGGATTATTCATAAATTTGACATGTGTCATTTAGCT
1 TTAGTGACGATAGATTATTCATAAATTTGACATGTCACATTTAGCT
* *
69572 TTAGTGATGATAGATTATTCATAAATTTGACGTGTCACATTT
1 TTAGTGACGATAGATTATTCATAAATTTGACATGTCACATTT
69614 TGAATGATTA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.30, C:0.10, G:0.18, T:0.42
Consensus pattern (46 bp):
TTAGTGACGATAGATTATTCATAAATTTGACATGTCACATTTAGCT
Found at i:76113 original size:91 final size:89
Alignment explanation
Indices: 76013--76238 Score: 314
Period size: 89 Copynumber: 2.5 Consensus size: 89
76003 TTTAAACAAT
* * *
76013 TAAATAATAAAAACATTAAGAAACAAAATGAGTAAAAAAAG-CTATAATTGAATAATAAAACATT
1 TAAATAATAAAAACATTAAGAAACAAAATAAATAAAAAAAGTCTATAATTAAAT-A-AAAACATT
*
76077 AAGAAACAAAATAAATAGAA-AGTTCA
64 AAGAAACAAAATAAATA-AAGAGTGCA
* *
76103 TAACTAAATAAAAACATTAAGAAACAAAATAAAT-AAAAAAGTCCATAATTAAATAAAAACATTA
1 TAAAT-AATAAAAACATTAAGAAACAAAATAAATAAAAAAAGTCTATAATTAAATAAAAACATTA
*
76167 AGACACAAAATAAATAAAGAGTGCA
65 AGAAACAAAATAAATAAAGAGTGCA
*
76192 TAAATAATAAAAACAATAAGAAACAAAATAAATAAAAACAAGTCTAT
1 TAAATAATAAAAACATTAAGAAACAAAATAAATAAAAA-AAGTCTAT
76239 TGATGTCTGT
Statistics
Matches: 121, Mismatches: 10, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
88 29 0.24
89 37 0.31
90 19 0.16
91 36 0.30
ACGTcount: A:0.65, C:0.08, G:0.07, T:0.20
Consensus pattern (89 bp):
TAAATAATAAAAACATTAAGAAACAAAATAAATAAAAAAAGTCTATAATTAAATAAAAACATTAA
GAAACAAAATAAATAAAGAGTGCA
Found at i:76132 original size:44 final size:44
Alignment explanation
Indices: 76018--76229 Score: 259
Period size: 45 Copynumber: 4.8 Consensus size: 44
76008 ACAATTAAAT
* *
76018 AATAAAAACATTAAGAAACAAAATGAGTAA-AAAAAGCT-ATAATTG
1 AATAAAAACATTAAGAAACAAAAT-A--AATAAAAAGTTCATAATTA
* *
76063 AATAATAAAACATTAAGAAACAAAATAAATAGAAAGTTCATAACTA
1 AAT-A-AAAACATTAAGAAACAAAATAAATAAAAAGTTCATAATTA
*
76109 AATAAAAACATTAAGAAACAAAATAAATAAAAAAGTCCATAATTA
1 AATAAAAACATTAAGAAACAAAATAAAT-AAAAAGTTCATAATTA
* * * *
76154 AATAAAAACATTAAGACACAAAATAAATAAAGAGTGCATAAAT-
1 AATAAAAACATTAAGAAACAAAATAAATAAAAAGTTCATAATTA
*
76197 AATAAAAACAATAAGAAACAAAATAAATAAAAA
1 AATAAAAACATTAAGAAACAAAATAAATAAAAA
76230 CAAGTCTATT
Statistics
Matches: 148, Mismatches: 14, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
43 30 0.20
44 38 0.26
45 50 0.34
46 10 0.07
47 20 0.14
ACGTcount: A:0.66, C:0.08, G:0.07, T:0.19
Consensus pattern (44 bp):
AATAAAAACATTAAGAAACAAAATAAATAAAAAGTTCATAATTA
Found at i:76137 original size:25 final size:25
Alignment explanation
Indices: 76107--76231 Score: 71
Period size: 25 Copynumber: 5.5 Consensus size: 25
76097 AGTTCATAAC
76107 TAAATAAAAACATTAAGAAACAAAA
1 TAAATAAAAACATTAAGAAACAAAA
** *
76132 TAAAT--AAA-A--AAG-TCCATAAT
1 TAAATAAAAACATTAAGAAACA-AAA
*
76152 TAAATAAAAACATTAAGACACAAAA
1 TAAATAAAAACATTAAGAAACAAAA
* *
76177 TAAAT--AAAGAGT--G---CATAAA
1 TAAATAAAAACATTAAGAAACA-AAA
*
76196 T-AATAAAAACAATAAGAAACAAAA
1 TAAATAAAAACATTAAGAAACAAAA
76220 TAAATAAAAACA
1 TAAATAAAAACA
76232 AGTCTATTGA
Statistics
Matches: 74, Mismatches: 10, Indels: 32
0.64 0.09 0.28
Matches are distributed among these distances:
18 5 0.07
19 6 0.08
20 15 0.20
21 1 0.01
22 5 0.07
23 9 0.12
24 4 0.05
25 27 0.36
26 2 0.03
ACGTcount: A:0.68, C:0.09, G:0.06, T:0.18
Consensus pattern (25 bp):
TAAATAAAAACATTAAGAAACAAAA
Found at i:76641 original size:21 final size:21
Alignment explanation
Indices: 76617--76722 Score: 131
Period size: 21 Copynumber: 5.0 Consensus size: 21
76607 AAACCCTACG
76617 GTGGTGGCATCTGAAATGGTT
1 GTGGTGGCATCTGAAATGGTT
* * *
76638 GTGGTGGCATCGGAAAGGGCT
1 GTGGTGGCATCTGAAATGGTT
** *
76659 ACGGTGTCATCTGAAATGGTT
1 GTGGTGGCATCTGAAATGGTT
*
76680 GTGGTGTCATCTGAAATGGTT
1 GTGGTGGCATCTGAAATGGTT
* *
76701 GTGGTGGCATATGAAATAGTT
1 GTGGTGGCATCTGAAATGGTT
76722 G
1 G
76723 CGGAATATAA
Statistics
Matches: 71, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 71 1.00
ACGTcount: A:0.22, C:0.10, G:0.37, T:0.31
Consensus pattern (21 bp):
GTGGTGGCATCTGAAATGGTT
Found at i:80232 original size:63 final size:63
Alignment explanation
Indices: 80133--80258 Score: 252
Period size: 63 Copynumber: 2.0 Consensus size: 63
80123 ATGCTTGGAA
80133 AATGATTCTACATCATCCACAACATCATAATCAAGCTTTAATTCATTAAGATCCAACATCCCC
1 AATGATTCTACATCATCCACAACATCATAATCAAGCTTTAATTCATTAAGATCCAACATCCCC
80196 AATGATTCTACATCATCCACAACATCATAATCAAGCTTTAATTCATTAAGATCCAACATCCCC
1 AATGATTCTACATCATCCACAACATCATAATCAAGCTTTAATTCATTAAGATCCAACATCCCC
80259 TTCATCCATC
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 63 1.00
ACGTcount: A:0.38, C:0.29, G:0.05, T:0.29
Consensus pattern (63 bp):
AATGATTCTACATCATCCACAACATCATAATCAAGCTTTAATTCATTAAGATCCAACATCCCC
Done.