genome.fa.s5690.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005690.1 Hibiscus syriacus cultivar Beakdansim tig00013311_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64822

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1532--1740	20	11.1	20	75	14	160	33	22	19	24	1.97
1540--1677	73	1.9	72	90	1	222	31	23	19	25	1.98
1874--1933	13	4.3	14	73	12	52	46	16	0	36	1.47
3924--3999	20	3.8	20	92	3	118	38	23	18	19	1.93
4044--4089	20	2.3	20	92	0	74	19	19	26	34	1.96
4231--4280	18	2.8	18	87	0	73	46	4	16	34	1.65
6001--6068	20	3.5	20	77	2	66	52	22	11	13	1.72
6650--6707	20	2.9	20	94	0	98	24	24	25	25	2.00
6651--6741	20	4.6	20	84	10	89	23	23	23	30	1.99
6738--6783	21	2.2	21	92	0	74	36	19	26	17	1.94
8447--8808	175	2.1	176	90	3	570	42	3	8	46	1.50
15134--15211	3	26.0	3	79	14	81	33	3	1	61	1.22
16668--16737	29	2.4	28	77	15	72	21	12	5	60	1.53
16668--16828	30	5.4	30	77	5	116	19	12	10	57	1.63
18696--18756	30	2.0	30	90	0	95	16	9	11	62	1.54
20821--20874	21	2.6	21	96	0	99	24	25	25	24	2.00
20903--20942	21	2.0	21	90	5	64	35	37	10	17	1.83
23484--23562	22	3.6	22	84	5	106	32	24	17	25	1.97
24356--24448	35	2.6	35	85	11	111	77	7	13	1	1.03
24369--24461	13	7.7	13	79	16	78	77	5	13	3	1.07
24353--24428	19	4.0	19	73	16	68	77	6	14	1	1.03
24369--24461	24	3.9	23	80	13	100	77	5	13	3	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26775--26829	19	2.9	19	74	15	60	65	1	9	23	1.31
26904--27053	22	6.9	22	69	22	68	64	2	4	29	1.26
27231--27273	22	1.9	23	86	13	63	72	0	2	25	0.97
27245--27301	25	2.3	25	78	6	62	64	1	0	33	1.04
27693--27785	37	2.5	37	85	0	114	31	13	12	41	1.83
28534--29791	106	11.9	106	91	0	1881	23	18	24	33	1.96
31164--31228	8	7.8	8	75	16	60	0	16	3	80	0.85
31187--31235	11	4.4	11	82	5	53	2	12	4	81	0.91
31180--31227	22	2.3	21	83	16	64	0	14	4	81	0.84
31177--31228	27	1.9	27	88	7	79	0	15	3	80	0.85
35511--35566	20	2.9	19	75	19	62	66	1	8	23	1.30
35660--35750	21	4.0	22	76	12	78	63	1	4	30	1.21
35954--36000	23	2.0	23	84	15	62	70	0	2	27	0.99
36696--36756	21	2.9	21	85	0	86	19	22	29	27	1.98
36967--37069	9	11.3	9	67	15	52	46	1	15	35	1.57
38583--38736	65	2.4	63	87	7	215	30	13	15	40	1.86
38621--38751	65	2.0	64	81	7	149	34	12	16	36	1.87
38860--39045	40	4.3	40	67	20	115	21	34	20	22	1.96
38839--39231	131	3.0	131	85	3	495	23	31	19	25	1.98
38840--39327	131	3.7	132	80	6	493	24	30	18	26	1.98
38840--39350	265	1.9	264	80	3	598	24	30	18	26	1.98
39517--39596	3	26.7	3	80	14	94	35	1	1	62	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40210--40254	22	2.0	22	83	8	56	60	4	31	4	1.37
41087--41304	30	7.3	29	74	9	163	19	10	10	60	1.56
41109--41176	28	2.4	29	78	16	79	23	7	10	58	1.56
41088--41304	61	3.7	60	78	5	201	19	10	10	60	1.57
42175--42303	2	67.5	2	75	19	80	38	1	2	57	1.21
42197--42299	41	2.6	39	80	16	113	35	1	2	59	1.24
42257--42375	7	16.6	7	74	14	57	26	1	0	71	0.96
42195--42297	43	2.5	41	83	10	131	35	1	2	59	1.24
42313--42419	43	2.4	44	80	12	112	18	4	0	76	0.95
42313--42402	40	2.2	40	86	5	119	18	2	0	78	0.85
42237--42398	51	3.1	52	81	9	161	27	2	0	70	1.00
42313--42413	24	4.2	23	73	14	62	18	3	0	77	0.93
45517--45554	13	3.0	13	85	14	53	76	2	15	5	1.08
46627--46720	31	2.9	32	80	4	118	29	10	19	40	1.85
46620--46733	32	3.6	32	77	4	115	28	12	20	38	1.89
47209--47425	106	2.0	106	87	3	312	34	23	19	23	1.97
47679--47860	87	2.1	87	92	0	301	31	18	12	37	1.88
47793--47981	37	5.4	37	69	16	132	28	18	13	40	1.88
47766--48008	102	2.4	102	91	0	396	31	18	12	37	1.88
48046--48148	36	2.8	37	91	2	181	29	22	12	35	1.91
48059--48245	102	1.8	102	85	4	261	28	19	12	39	1.88
48158--48279	36	3.4	36	83	7	158	24	18	13	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49418--49472	21	2.5	23	77	14	62	10	9	3	76	1.13
49484--49666	9	19.7	9	71	15	63	21	3	1	73	1.07
49511--49621	4	28.2	4	74	15	63	27	1	1	69	1.08
49511--49621	36	3.0	37	80	8	104	27	1	1	69	1.08
49492--49621	20	6.4	19	69	23	70	26	2	2	69	1.12
49545--49656	52	2.2	50	81	12	122	20	3	0	75	1.01
58507--58531	3	8.3	3	100	0	50	32	0	0	68	0.90

Tables:   1

The End!