genome.fa.s5692.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005692.1 Hibiscus syriacus cultivar Beakdansim tig00013313_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77519

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11435--12142	54	13.1	54	83	2	467	31	16	16	35	1.91
11445--12140	108	6.5	108	83	3	801	31	16	16	35	1.91
11466--12142	162	4.2	162	83	1	829	31	16	16	36	1.91
12408--12460	20	2.6	21	85	5	65	26	20	13	39	1.89
15550--15583	10	3.5	10	88	8	52	32	0	0	67	0.91
17859--17892	18	1.9	17	94	5	59	41	2	5	50	1.42
18875--18923	20	2.5	20	86	0	71	24	14	36	24	1.93
21244--21292	23	2.1	23	85	7	64	26	2	14	57	1.48
39837--39954	3	39.7	3	93	5	204	31	0	0	67	0.96
42596--42836	126	1.9	126	82	1	304	35	11	12	41	1.79
42596--42875	126	2.2	126	79	5	298	37	10	11	39	1.77
43248--43341	3	31.3	3	100	0	188	32	0	0	67	0.91
43527--43580	2	27.0	2	100	0	108	50	0	0	50	1.00
52765--52806	2	21.0	2	100	0	84	50	0	0	50	1.00
53962--54103	36	3.9	35	74	14	119	48	9	15	26	1.76
56043--56190	36	4.1	37	78	3	151	47	7	14	29	1.72
56351--56585	97	2.4	97	85	3	323	41	9	18	30	1.82
57023--57067	18	2.5	18	92	0	81	15	20	13	51	1.76
62133--62172	18	2.1	19	86	9	55	55	5	20	20	1.62
63125--63325	94	2.1	94	82	1	231	32	16	22	27	1.96
63310--63347	20	1.9	20	94	0	67	42	13	21	23	1.88
63729--64014	47	6.1	47	89	2	421	43	11	22	23	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63762--63896	27	5.5	26	66	28	82	41	10	23	24	1.85
63789--63909	20	5.3	20	68	27	64	42	9	23	23	1.84
70160--70236	22	3.6	22	87	3	104	31	15	23	29	1.95
70065--70300	116	2.0	116	84	4	307	33	14	21	30	1.93
70292--70329	20	1.9	20	84	10	51	42	7	23	26	1.81
70775--70848	20	3.7	20	92	0	121	39	12	28	20	1.88
70835--70920	27	3.4	27	66	26	80	40	12	24	22	1.89
70815--71225	47	8.7	47	91	1	653	41	12	23	22	1.87
70716--71225	94	5.5	94	88	4	750	41	11	23	22	1.87
70930--71063	27	5.5	27	66	23	107	41	14	23	20	1.89
70716--71225	141	3.7	141	89	3	750	41	11	23	22	1.87
71003--71076	20	3.3	20	70	22	67	40	12	27	20	1.87
71118--71199	27	3.3	27	70	22	97	42	12	24	20	1.86
71098--71178	20	3.7	20	72	22	63	40	12	28	18	1.87
72937--72975	13	3.1	13	85	3	53	41	7	12	38	1.72
74212--74405	55	3.5	55	83	5	216	40	13	15	29	1.87
74587--74649	31	2.0	31	93	0	108	31	11	23	33	1.90
74618--74755	56	2.5	56	89	3	199	37	14	19	28	1.91
75386--75439	18	3.1	18	83	2	65	37	7	25	29	1.83
75986--76122	31	4.5	30	75	8	107	78	3	5	12	1.04
76021--76112	40	2.3	39	80	10	107	82	4	3	9	0.91
76028--76175	62	2.3	60	80	14	149	79	4	4	12	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76017--76169	6	24.5	6	71	22	56	78	3	4	13	1.05
76200--76245	17	2.9	15	81	15	56	67	2	2	28	1.14

Tables:   1

The End!