Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005693.1 Hibiscus syriacus cultivar Beakdansim tig00013318_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 66767
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Found at i:6279 original size:30 final size:29
Alignment explanation
Indices: 6217--6281 Score: 85
Period size: 30 Copynumber: 2.2 Consensus size: 29
6207 TGGTAACTAC
** *
6217 ATCTTAATTAAATAAAACGAAAGTGGCGT
1 ATCTTAATTAAATAAAACGAAAGTACCAT
*
6246 ATCTTAATTAAATAAAAACGTAAGTACCAT
1 ATCTTAATTAAAT-AAAACGAAAGTACCAT
6276 ATCTTA
1 ATCTTA
6282 TGTATTTTGA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 13 0.42
30 18 0.58
ACGTcount: A:0.46, C:0.12, G:0.11, T:0.31
Consensus pattern (29 bp):
ATCTTAATTAAATAAAACGAAAGTACCAT
Found at i:7286 original size:23 final size:23
Alignment explanation
Indices: 7260--7325 Score: 96
Period size: 23 Copynumber: 2.9 Consensus size: 23
7250 TGTACTTCTG
* * *
7260 TGCTGAATCATTTAGCATTGTTT
1 TGCTGAATCAGTCAGCACTGTTT
7283 TGCTGAATCAGTCAGCACTGTTT
1 TGCTGAATCAGTCAGCACTGTTT
*
7306 TGCTGAATCAATCAGCACTG
1 TGCTGAATCAGTCAGCACTG
7326 AATCATTCAG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (23 bp):
TGCTGAATCAGTCAGCACTGTTT
Found at i:7925 original size:14 final size:14
Alignment explanation
Indices: 7863--7960 Score: 97
Period size: 14 Copynumber: 6.9 Consensus size: 14
7853 TCCAGTCATC
* *
7863 GAGTCAACTCGGTCC
1 GAGTCAAC-CCGTCT
*
7878 GAGTCAACCCGTCC
1 GAGTCAACCCGTCT
* * *
7892 AAGTCAACTCGGTAT
1 GAGTCAAC-CCGTCT
7907 GAGTCAACCCGTCT
1 GAGTCAACCCGTCT
* *
7921 GAGTCAACTCATCT
1 GAGTCAACCCGTCT
*
7935 GAGTCAACTCGTCT
1 GAGTCAACCCGTCT
7949 GAGTCAACCCGT
1 GAGTCAACCCGT
7961 TGACTTTGAC
Statistics
Matches: 70, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
14 52 0.74
15 18 0.26
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.22
Consensus pattern (14 bp):
GAGTCAACCCGTCT
Found at i:7928 original size:43 final size:42
Alignment explanation
Indices: 7863--7960 Score: 115
Period size: 43 Copynumber: 2.3 Consensus size: 42
7853 TCCAGTCATC
* *
7863 GAGTCAACTCGGTCCGAGTCAACCCGTCCAAGTCAACTCGGTAT
1 GAGTCAAC-CCGTCCGAGTCAACCCATCCAAGTCAACTC-GTAT
* * ** *
7907 GAGTCAACCCGTCTGAGTCAACTCATCTGAGTCAACTCGTCT
1 GAGTCAACCCGTCCGAGTCAACCCATCCAAGTCAACTCGTAT
7949 GAGTCAACCCGT
1 GAGTCAACCCGT
7961 TGACTTTGAC
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 15 0.32
43 24 0.51
44 8 0.17
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.22
Consensus pattern (42 bp):
GAGTCAACCCGTCCGAGTCAACCCATCCAAGTCAACTCGTAT
Found at i:7947 original size:28 final size:29
Alignment explanation
Indices: 7863--7956 Score: 127
Period size: 29 Copynumber: 3.3 Consensus size: 29
7853 TCCAGTCATC
* *
7863 GAGTCAACTCGGTCCGAGTCAACCCGTCC
1 GAGTCAACTCGGTCTGAGTCAACCCGTCT
* *
7892 AAGTCAACTCGGTATGAGTCAACCCGTCT
1 GAGTCAACTCGGTCTGAGTCAACCCGTCT
* *
7921 GAGTCAACTC-ATCTGAGTCAACTCGTCT
1 GAGTCAACTCGGTCTGAGTCAACCCGTCT
7949 GAGTCAAC
1 GAGTCAAC
7957 CCGTTGACTT
Statistics
Matches: 57, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
28 23 0.40
29 34 0.60
ACGTcount: A:0.26, C:0.31, G:0.21, T:0.22
Consensus pattern (29 bp):
GAGTCAACTCGGTCTGAGTCAACCCGTCT
Found at i:8978 original size:27 final size:27
Alignment explanation
Indices: 8930--8987 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
8920 GGAAGTATAG
* * *
8930 AATATCCCTGAAGTGTACAATGACCAA
1 AATATCCCTAAAGTATAAAATGACCAA
* *
8957 AATATCCCTAAAGTATAAAATGTCTAA
1 AATATCCCTAAAGTATAAAATGACCAA
8984 AATA
1 AATA
8988 CCTCTAAGCC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.47, C:0.17, G:0.10, T:0.26
Consensus pattern (27 bp):
AATATCCCTAAAGTATAAAATGACCAA
Found at i:14094 original size:20 final size:21
Alignment explanation
Indices: 14069--14107 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
14059 AGTCATATAT
14069 AGCCG-TTGGGGATATTTTGG
1 AGCCGTTTGGGGATATTTTGG
14089 AGCCGTTTGGGGATATTTT
1 AGCCGTTTGGGGATATTTT
14108 TCTACTCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.15, C:0.10, G:0.36, T:0.38
Consensus pattern (21 bp):
AGCCGTTTGGGGATATTTTGG
Found at i:22001 original size:127 final size:123
Alignment explanation
Indices: 21847--22100 Score: 350
Period size: 123 Copynumber: 2.0 Consensus size: 123
21837 AATCACTAAC
* *
21847 TTTTATTTTATTGCACTCTAACCTTTATTTATTTATTTATTATTTCTATTATTCGATTCGG-TCT
1 TTTTATTTTATTGCACTATAA-C---ATTTATTTATTTATTATTTCTAATATTCGATTCGGCT-T
* ** *
21911 TGTGGTGACCCGATCCGGGGTATGATCCGTATTATTATGGTTCGGACTCTGTTAA-CTATTAAT
61 TGTGGTGACCCGATCCGGAGTATGATCCACATTATTATGGTTCGAACTCTGTTAACCT-TTAAT
* *
21974 TTTTATTTTATTGCATTATAACATTTATTTATTTATTATTTCTAATATTTGATTCGGCTTTGTGG
1 TTTTATTTTATTGCACTATAACATTTATTTATTTATTATTTCTAATATTCGATTCGGCTTTGTGG
* *
22039 TGACCTGATCCGGAGTATGATCTACATTATTATGGTTCGAACTCTGTTAACCTTTAAT
66 TGACCCGATCCGGAGTATGATCCACATTATTATGGTTCGAACTCTGTTAACCTTTAAT
22097 TTTT
1 TTTT
22101 CTAACAATTA
Statistics
Matches: 115, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
123 92 0.80
124 3 0.03
126 1 0.01
127 19 0.17
ACGTcount: A:0.22, C:0.14, G:0.15, T:0.49
Consensus pattern (123 bp):
TTTTATTTTATTGCACTATAACATTTATTTATTTATTATTTCTAATATTCGATTCGGCTTTGTGG
TGACCCGATCCGGAGTATGATCCACATTATTATGGTTCGAACTCTGTTAACCTTTAAT
Found at i:22038 original size:123 final size:123
Alignment explanation
Indices: 21873--22100 Score: 352
Period size: 123 Copynumber: 1.9 Consensus size: 123
21863 TCTAACCTTT
* *
21873 ATTTATTTATTTATTATTTCTATTATTCGATTCGGTCTTGTGGTGACCCGATCCGGGGTATGATC
1 ATTTATTTATTTATTATTTCTAATATTCGATTCGGTCTTGTGGTGACCCGATCCGGAGTATGATC
** *
21938 CGTATTATTATGGTTCGGACTCTGTTAA-CTATTAATTTTTATTTTATTGCATTATAAC
66 CACATTATTATGGTTCGAACTCTGTTAACCT-TTAATTTTTATTTTATTGCATTATAAC
* *
21996 ATTTATTTATTTATTATTTCTAATATTTGATTCGG-CTTTGTGGTGACCTGATCCGGAGTATGAT
1 ATTTATTTATTTATTATTTCTAATATTCGATTCGGTC-TTGTGGTGACCCGATCCGGAGTATGAT
*
22060 CTACATTATTATGGTTCGAACTCTGTTAACCTTTAATTTTT
65 CCACATTATTATGGTTCGAACTCTGTTAACCTTTAATTTTT
22101 CTAACAATTA
Statistics
Matches: 95, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
122 1 0.01
123 92 0.97
124 2 0.02
ACGTcount: A:0.22, C:0.14, G:0.16, T:0.48
Consensus pattern (123 bp):
ATTTATTTATTTATTATTTCTAATATTCGATTCGGTCTTGTGGTGACCCGATCCGGAGTATGATC
CACATTATTATGGTTCGAACTCTGTTAACCTTTAATTTTTATTTTATTGCATTATAAC
Found at i:25708 original size:23 final size:23
Alignment explanation
Indices: 25674--25734 Score: 95
Period size: 23 Copynumber: 2.7 Consensus size: 23
25664 CTCATATAAA
*
25674 TGCACCAAAGTGCCACGTAGAAT
1 TGCACCGAAGTGCCACGTAGAAT
* *
25697 TGCACCGTAGTGCCGCGTAGAAT
1 TGCACCGAAGTGCCACGTAGAAT
25720 TGCACCGAAGTGCCA
1 TGCACCGAAGTGCCA
25735 TATAAGATTG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.28, C:0.28, G:0.26, T:0.18
Consensus pattern (23 bp):
TGCACCGAAGTGCCACGTAGAAT
Found at i:29586 original size:15 final size:13
Alignment explanation
Indices: 29561--29643 Score: 82
Period size: 13 Copynumber: 6.2 Consensus size: 13
29551 AAGAGAACAG
29561 AAAAACAAAGAGA
1 AAAAACAAAGAGA
29574 AAAGAAGC-AA-AGA
1 AAA-AA-CAAAGAGA
29587 AAAAACAAAGAGCA
1 AAAAACAAAGAG-A
* *
29601 AAAAAAAAAGAGC
1 AAAAACAAAGAGA
29614 AAAAACAAAGAGA
1 AAAAACAAAGAGA
29627 AAAGAAGCAAAGA-A
1 AAA-AA-CAAAGAGA
29641 AAA
1 AAA
29644 CAAAGAACAA
Statistics
Matches: 59, Mismatches: 4, Indels: 13
0.78 0.05 0.17
Matches are distributed among these distances:
11 1 0.02
12 4 0.07
13 25 0.42
14 22 0.37
15 7 0.12
ACGTcount: A:0.75, C:0.08, G:0.17, T:0.00
Consensus pattern (13 bp):
AAAAACAAAGAGA
Found at i:29622 original size:20 final size:21
Alignment explanation
Indices: 29599--29637 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
29589 AAACAAAGAG
29599 CAAAAAAAAAAG-AGCAAAAA
1 CAAAAAAAAAAGAAGCAAAAA
* *
29619 CAAAGAGAAAAGAAGCAAA
1 CAAAAAAAAAAGAAGCAAA
29638 GAAAAACAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.74, C:0.10, G:0.15, T:0.00
Consensus pattern (21 bp):
CAAAAAAAAAAGAAGCAAAAA
Found at i:31400 original size:35 final size:36
Alignment explanation
Indices: 31305--31439 Score: 173
Period size: 36 Copynumber: 3.8 Consensus size: 36
31295 TGAGAATTTT
31305 AAAACAAATTTTTGTCTCGCTTGAGACAATTTCTCTC
1 AAAACAAA-TTTTGTCTCGCTTGAGACAATTTCTCTC
* *
31342 AAAACAAATTTTGTCTCGCTTGAGACAGTTT-TCTA
1 AAAACAAATTTTGTCTCGCTTGAGACAATTTCTCTC
* * * *
31377 AAAATAAATTTTGTTTCGTTTGAGACAATTTCTTTC
1 AAAACAAATTTTGTCTCGCTTGAGACAATTTCTCTC
* **
31413 AAAACAAATTTCGTCTCATTTGAGACA
1 AAAACAAATTTTGTCTCGCTTGAGACA
31440 TTTTTCCTTT
Statistics
Matches: 85, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
35 30 0.35
36 47 0.55
37 8 0.09
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.39
Consensus pattern (36 bp):
AAAACAAATTTTGTCTCGCTTGAGACAATTTCTCTC
Found at i:31400 original size:71 final size:72
Alignment explanation
Indices: 31305--31445 Score: 203
Period size: 71 Copynumber: 2.0 Consensus size: 72
31295 TGAGAATTTT
* *
31305 AAAACAAATTTTTGTCTCGCTTGAGACAATTTCTCTCAAAACAAATTTTGTCTCGCTTGAGACAG
1 AAAACAAATTTTTGTCTCGCTTGAGACAATTTCTCTCAAAACAAATTTCGTCTCACTTGAGACAG
31370 TTTTCTA
66 TTTTCTA
* * * * * *
31377 AAAATAAA-TTTTGTTTCGTTTGAGACAATTTCTTTCAAAACAAATTTCGTCTCATTTGAGACAT
1 AAAACAAATTTTTGTCTCGCTTGAGACAATTTCTCTCAAAACAAATTTCGTCTCACTTGAGACAG
31441 TTTTC
66 TTTTC
31446 CTTTGAGATA
Statistics
Matches: 61, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
71 54 0.89
72 7 0.11
ACGTcount: A:0.31, C:0.17, G:0.11, T:0.40
Consensus pattern (72 bp):
AAAACAAATTTTTGTCTCGCTTGAGACAATTTCTCTCAAAACAAATTTCGTCTCACTTGAGACAG
TTTTCTA
Found at i:31584 original size:104 final size:103
Alignment explanation
Indices: 31405--31858 Score: 542
Period size: 104 Copynumber: 4.3 Consensus size: 103
31395 TTTGAGACAA
* *** *
31405 TTTCT-TTCAAAACAAATTTCGTCTCATTTGAGACATTTTTCCTTTGAGATACAAATTTCAAATT
1 TTTCTCTT-AAAACAAACTTCGTCTTGCTTGAGACATTTTTCCTTTGATATACAAATTTCAAATT
*
31469 TGTTTCACATTAAACAAAGTTGATCTCATTTGAGATCGC
65 TGTTTCACATTAAACAAAGTTGATCTCACTTGAGATCGC
31508 TTTCTCTTAAAACAAACTTCGTCTTGCTTGAGACATTTTTTCCTTTGATATACAAATTTCAAATT
1 TTTCTCTTAAAACAAACTTCGTCTTGCTTGAGACA-TTTTTCCTTTGATATACAAATTTCAAATT
31573 TGTTTCACATTAAACAAAGTTGATCTCA-TTAGAGATCGC
65 TGTTTCACATTAAACAAAGTTGATCTCACTT-GAGATCGC
* **
31612 TTTCTCTTAAAACAAACTTTGTCTTGCTTGAGACATTTTTTCCTTTGATATACAAATTTTGAATT
1 TTTCTCTTAAAACAAACTTCGTCTTGCTTGAGACA-TTTTTCCTTTGATATACAAATTTCAAATT
* * * *
31677 TGATTCAC-TTGAAACAAAAATTAATCTCACTTGAGATTG-
65 TGTTTCACATT-AAAC-AAAGTTGATCTCACTTGAGATCGC
* * * * * *
31716 TTATTTCTTTCAAAATAAATTTCGTCTCGTTTGAGACATTTTTCCTTTGAGAATACAAATTTCGA
1 TT-TCTC-TT-AAAACAAACTTCGTCTTGCTTGAGACATTTTTCCTTTGA-TATACAAATTTC-A
*
31781 AA-TTGTTTCACATTAAACAAAGTTGATCTCACTTGAGATCGT
61 AATTTGTTTCACATTAAACAAAGTTGATCTCACTTGAGATCGC
** *
31823 TTTCTCAAAAAACAAAACTTTGTCTCT-CTTGAGACA
1 TTTCTCTTAAAAC-AAACTTCGTCT-TGCTTGAGACA
31859 AATTTTCTTG
Statistics
Matches: 303, Mismatches: 33, Indels: 28
0.83 0.09 0.08
Matches are distributed among these distances:
103 32 0.11
104 145 0.48
105 37 0.12
106 39 0.13
107 46 0.15
108 4 0.01
ACGTcount: A:0.31, C:0.17, G:0.11, T:0.41
Consensus pattern (103 bp):
TTTCTCTTAAAACAAACTTCGTCTTGCTTGAGACATTTTTCCTTTGATATACAAATTTCAAATTT
GTTTCACATTAAACAAAGTTGATCTCACTTGAGATCGC
Found at i:31776 original size:211 final size:208
Alignment explanation
Indices: 31432--31858 Score: 562
Period size: 211 Copynumber: 2.0 Consensus size: 208
31422 TTCGTCTCAT
* * *
31432 TTGAGACATTTTTCCTTTGAGATACAAATTTCAAATTTGTTTCACATTAAACAAAGTTGATCTCA
1 TTGAGACATTTTTCCTTTGAGATACAAATTTCAAATTTGATTCACATTAAACAAAATTAATCTCA
* * * *
31497 TTTGAGATCGCTTTCTCTTAAAACAAACTTCGTCTTGCTTGAGACATTTTTTCCTTTGATATACA
66 CTTGAGATCGATTTCTCTTAAAACAAACTTCGTCTCGCTTGAGACATTTTTTCCTTTGAAATACA
**
31562 AATTTC-AAATTTGTTTCACATTAAACAAAGTTGATCTCA-TTAGAGATCGCTTTCTCTTAAAAC
131 AATTTCGAAA-TTGTTTCACATTAAACAAAGTTGATCTCACTT-GAGATCGCTTTCTCAAAAAAC
31625 -AAACTTTGTCT-TGC
194 AAAACTTTGTCTCT-C
* **
31639 TTGAGACATTTTTTCCTTTGATATACAAATTTTGAATTTGATTCAC-TTGAAACAAAAATTAATC
1 TTGAGACA-TTTTTCCTTTGAGATACAAATTTCAAATTTGATTCACATT-AAAC-AAAATTAATC
* * * *
31703 TCACTTGAGATTGTTATTTCT-TTCAAAATAAATTTCGTCTCGTTTGAGACA-TTTTTCCTTTGA
63 TCACTTGAGATCG--ATTTCTCTT-AAAACAAACTTCGTCTCGCTTGAGACATTTTTTCCTTTGA
*
31766 GAATACAAATTTCGAAATTGTTTCACATTAAACAAAGTTGATCTCACTTGAGATCGTTTTCTCAA
125 -AATACAAATTTCGAAATTGTTTCACATTAAACAAAGTTGATCTCACTTGAGATCGCTTTCTCAA
31831 AAAACAAAACTTTGTCTCTC
189 AAAACAAAACTTTGTCTCTC
31851 TTGAGACA
1 TTGAGACA
31859 AATTTTCTTG
Statistics
Matches: 192, Mismatches: 17, Indels: 17
0.85 0.08 0.08
Matches are distributed among these distances:
207 10 0.05
208 37 0.19
209 19 0.10
210 14 0.07
211 86 0.45
212 25 0.13
213 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.11, T:0.40
Consensus pattern (208 bp):
TTGAGACATTTTTCCTTTGAGATACAAATTTCAAATTTGATTCACATTAAACAAAATTAATCTCA
CTTGAGATCGATTTCTCTTAAAACAAACTTCGTCTCGCTTGAGACATTTTTTCCTTTGAAATACA
AATTTCGAAATTGTTTCACATTAAACAAAGTTGATCTCACTTGAGATCGCTTTCTCAAAAAACAA
AACTTTGTCTCTC
Found at i:32079 original size:66 final size:65
Alignment explanation
Indices: 31904--32139 Score: 255
Period size: 68 Copynumber: 3.5 Consensus size: 65
31894 AAAACAAAAT
* * * *
31904 GAAAAATCTTTGAGTATGTTTCTTTGATAGCAAAATTTTGTCTCTTTTGAGAAAGATTCTTTTGA
1 GAAAAATCTTTGAGTCTGTTTCTTTGAAAACAAAATTTTGTCTCTTTTGAGACAG-TTCTTTT-A
31969 AA
64 AA
* *
31971 CAAAGAATCTTTGAGTCTGTTTCTTTGGAAACAAAATTTTGTCTCTTTTGAGACAGTTCCTTTTA
1 GAAA-AATCTTTGAGTCTGTTTCTTTGAAAACAAAATTTTGTCTCTTTTGAGACAGTT-CTTTTA
32036 AA
64 AA
* * * *
32038 GAAAAATCTTTGAGTCTATTT-TTATGAAAACAAAGTTTTGTCTCTTTTGAGACAATTTCTCTTA
1 GAAAAATCTTTGAGTCTGTTTCTT-TGAAAACAAAATTTTGTCTCTTTTGAGAC-AGTTCTTTTA
32102 AA
64 AA
*
32104 -ACAAACATCTTTGAGAT-TGTTTCACTTG-AAACAAAA
1 GA-AAA-ATCTTTGAG-TCTGTTTC-TTTGAAAACAAAA
32140 CCTATCTTTG
Statistics
Matches: 145, Mismatches: 15, Indels: 18
0.81 0.08 0.10
Matches are distributed among these distances:
65 3 0.02
66 53 0.37
67 34 0.23
68 54 0.37
69 1 0.01
ACGTcount: A:0.33, C:0.13, G:0.14, T:0.41
Consensus pattern (65 bp):
GAAAAATCTTTGAGTCTGTTTCTTTGAAAACAAAATTTTGTCTCTTTTGAGACAGTTCTTTTAAA
Found at i:32149 original size:33 final size:33
Alignment explanation
Indices: 32110--32172 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
32100 TAAAACAAAC
32110 ATCTTTGAGAT-TGTTTCACTTGAAACAAAACCT
1 ATCTTTGAG-TCTGTTTCACTTGAAACAAAACCT
*
32143 ATCTTTGAGTCTGTTTCTCTTGAAACAAAA
1 ATCTTTGAGTCTGTTTCACTTGAAACAAAA
32173 GTCTGTTAGT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
32 1 0.04
33 27 0.96
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.38
Consensus pattern (33 bp):
ATCTTTGAGTCTGTTTCACTTGAAACAAAACCT
Found at i:32188 original size:28 final size:28
Alignment explanation
Indices: 32093--32252 Score: 121
Period size: 28 Copynumber: 5.4 Consensus size: 28
32083 TTTGAGACAA
*
32093 TTTCTCTT-AAAACAAACATCTTTGAGATTG
1 TTTCTTTTGAAAA-AAA-ATCTTTGAG-TTG
**
32123 TTTCACTTGAAACAAAACCTATCTTTGAGTCTG
1 TTTCTTTTGAAA-AAAA---ATCTTTGAGT-TG
* *
32156 TTTCTCTTGAAACAAAAGTCTGTT-AGTTG
1 TTTCTTTTGAAA-AAAAATCT-TTGAGTTG
32185 -TTCTTTTGAAATAAAAATCTTTGAGTTG
1 TTTCTTTTGAAA-AAAAATCTTTGAGTTG
*
32213 TTTCTTTTG-AAAAAAACCTTTGAGTCTG
1 TTTCTTTTGAAAAAAAATCTTTGAGT-TG
*
32241 TTTATTTTGAAA
1 TTTCTTTTGAAA
32253 CAAAGTTTTC
Statistics
Matches: 111, Mismatches: 9, Indels: 21
0.79 0.06 0.15
Matches are distributed among these distances:
27 15 0.14
28 34 0.31
29 12 0.11
30 13 0.12
31 8 0.07
32 2 0.02
33 27 0.24
ACGTcount: A:0.31, C:0.14, G:0.13, T:0.42
Consensus pattern (28 bp):
TTTCTTTTGAAAAAAAATCTTTGAGTTG
Found at i:32249 original size:57 final size:58
Alignment explanation
Indices: 32143--32252 Score: 138
Period size: 57 Copynumber: 1.9 Consensus size: 58
32133 AACAAAACCT
* *
32143 ATCTTTGAGTCTGTTTCTCTTGAAACAAAAGTCTGTTAGTTGTTCTTTTGAAATAAAA
1 ATCTTTGAGTCTGTTTCTCTTGAAACAAAAGCCTGTTAGTTGTTATTTTGAAATAAAA
*
32201 ATCTTTGAGT-TGTTTCTTTTGAAA-AAAA-CCT-TTGAGTCTGTTTATTTTGAAA
1 ATCTTTGAGTCTGTTTCTCTTGAAACAAAAGCCTGTT-AGT-TG-TTATTTTGAAA
32253 CAAAGTTTTC
Statistics
Matches: 46, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
54 2 0.04
55 5 0.11
56 6 0.13
57 23 0.50
58 10 0.22
ACGTcount: A:0.28, C:0.11, G:0.15, T:0.45
Consensus pattern (58 bp):
ATCTTTGAGTCTGTTTCTCTTGAAACAAAAGCCTGTTAGTTGTTATTTTGAAATAAAA
Found at i:32332 original size:29 final size:29
Alignment explanation
Indices: 32300--32377 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
32290 AAAATATTCA
32300 AGTCGTTTCTTTTGAAACAAAAATCTTTG
1 AGTCGTTTCTTTTGAAACAAAAATCTTTG
***
32329 AGTCGTTTCTTTTGAAACACCTATCTTTG
1 AGTCGTTTCTTTTGAAACAAAAATCTTTG
* *
32358 AGTTAGTTTCTCTTGAAACA
1 AG-TCGTTTCTTTTGAAACA
32378 CCCACCTTTG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
29 28 0.65
30 15 0.35
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (29 bp):
AGTCGTTTCTTTTGAAACAAAAATCTTTG
Found at i:32374 original size:30 final size:29
Alignment explanation
Indices: 32300--32406 Score: 115
Period size: 30 Copynumber: 3.6 Consensus size: 29
32290 AAAATATTCA
* **
32300 AGTCGTTTCTTTTGAAACAAAAATCTTTG
1 AGTCGTTTCTCTTGAAACACCAATCTTTG
* *
32329 AGTCGTTTCTTTTGAAACACCTATCTTTG
1 AGTCGTTTCTCTTGAAACACCAATCTTTG
* * *
32358 AGTTAGTTTCTCTTGAAACACCCACCTTTG
1 AG-TCGTTTCTCTTGAAACACCAATCTTTG
*
32388 AGATCGTTTCCCTTGAAAC
1 AG-TCGTTTCTCTTGAAAC
32407 GCATTTTGTC
Statistics
Matches: 67, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
29 28 0.42
30 39 0.58
ACGTcount: A:0.25, C:0.21, G:0.14, T:0.39
Consensus pattern (29 bp):
AGTCGTTTCTCTTGAAACACCAATCTTTG
Found at i:32757 original size:134 final size:133
Alignment explanation
Indices: 32537--32868 Score: 425
Period size: 134 Copynumber: 2.5 Consensus size: 133
32527 TCAGCCATCA
* ** * ** *
32537 TCATCACGTAGGAACCGTGTCATCCCCTGACCAGATCTCCTCATCATGTAGAAGCCGCATCAACC
1 TCATCACGTATGAGTCGTGTCATCCCC-GACCAGATCTCCTCATCATGTAGGAGCCGTGTCACCC
* ** * * *
32602 TTAGATAATTAGTCGTCCTCATCACGTAGGAACCGAGTTATCACCCTTTCTAAAGATGGCCAGAA
65 ATAGATAACAACTCGTCCTCATCACGTAGGAACCGAGTTATCACCATTCCTAAAGATGGCCAGAA
32667 CTCT
130 CTCT
* * *
32671 TTATCGCGTATGAG-CAGTGTCATCCCTCGACCAGACCTCCTCATCATGTAGGAGCCGTGTCACC
1 TCATCACGTATGAGTC-GTGTCATCCC-CGACCAGATCTCCTCATCATGTAGGAGCCGTGTCACC
*
32735 CATAGATAACCAACT-GTCCTCATCACGTAGGAACCGAGTTATCATCATTCCTAAAGATGGCCAG
64 CATAGATAA-CAACTCGTCCTCATCACGTAGGAACCGAGTTATCACCATTCCTAAAGATGGCCAG
32799 AACTCT
128 AACTCT
* * *
32805 TCATCACGTATGAGTCGTGTCATCCACCGACCAGATCTCTTCATCACGTAGGAGTCGTGTCACC
1 TCATCACGTATGAGTCGTGTCATCC-CCGACCAGATCTCCTCATCATGTAGGAGCCGTGTCACC
32869 TTTAAACGAC
Statistics
Matches: 171, Mismatches: 22, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
133 1 0.01
134 165 0.96
135 5 0.03
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.25
Consensus pattern (133 bp):
TCATCACGTATGAGTCGTGTCATCCCCGACCAGATCTCCTCATCATGTAGGAGCCGTGTCACCCA
TAGATAACAACTCGTCCTCATCACGTAGGAACCGAGTTATCACCATTCCTAAAGATGGCCAGAAC
TCT
Found at i:32850 original size:40 final size:41
Alignment explanation
Indices: 32795--32912 Score: 132
Period size: 43 Copynumber: 2.9 Consensus size: 41
32785 CTAAAGATGG
*
32795 CCAGAACTCTTCATCACGTATGAGTCGTGTCATCC-ACCGA
1 CCAGAACTCTTCATCACGTATGAGTCGTGTCATCCTAACGA
* *
32835 CCAGATCTCTTCATCACGTAGGAGTCGTGTCA-CCTTTAAACGA
1 CCAGAACTCTTCATCACGTATGAGTCGTGTCATCC--T-AACGA
* * **
32878 CCAGACCTTTTCATTGCGTATGAGTCGTGTCATCC
1 CCAGAACTCTTCATCACGTATGAGTCGTGTCATCC
32913 CCACCAACAA
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
39 2 0.03
40 30 0.46
43 31 0.48
44 2 0.03
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.29
Consensus pattern (41 bp):
CCAGAACTCTTCATCACGTATGAGTCGTGTCATCCTAACGA
Found at i:33599 original size:12 final size:12
Alignment explanation
Indices: 33584--33611 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
33574 TTTTTGCTTC
33584 TTTTTTTTATTT
1 TTTTTTTTATTT
33596 TTTTTTTTATTT
1 TTTTTTTTATTT
33608 TTTT
1 TTTT
33612 AGCCTCCTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.00, G:0.00, T:0.93
Consensus pattern (12 bp):
TTTTTTTTATTT
Found at i:34452 original size:132 final size:128
Alignment explanation
Indices: 34096--34487 Score: 536
Period size: 127 Copynumber: 3.0 Consensus size: 128
34086 TTATTGCATA
* * *
34096 TTAATCACTAACTTTTATTTTATTGCACTCTAACC-TTTATTTATTTATTTATTGTTTCTATTAT
1 TTAACCACTAACTTTTATTTTATTGCATTTTAACCTTTTATTTATTTATTTATTGTTTCTATTAT
* * * * * *
34160 TCGATTCGTCCTTGTGGTGACCCGATTCTGGGTATTATCTGTATTATTATGGTTCGGACTCTG
66 TCGATTCGGCCTTGTGGTGACCCGATCCAGGGTATAATCCGCATTATTATGGTTCGGACTCTG
*
34223 TTAACCACTAACTTTTATTTTATTGCATTTTAA-CTATTATTTATTTATTTATTGTTTCTATTAT
1 TTAACCACTAACTTTTATTTTATTGCATTTTAACCTTTTATTTATTTATTTATTGTTTCTATTAT
* * * *
34287 TCAATTCGGCCTTGTAGTGACCCGATCCGGGGTATGATCCGCATTATTATGGTTCGGACTCTG
66 TCGATTCGGCCTTGTGGTGACCCGATCCAGGGTATAATCCGCATTATTATGGTTCGGACTCTG
* * *
34350 TTAACTATTAACTTTTATTTTATTGCATTTTTAACCATTGTTTATTTATTTATTTATTATTTCTA
1 TTAACCACTAACTTTTATTTTATTGCA-TTTTAACC--T-TTTATTTATTTATTTATTGTTTCTA
* * * *
34415 ATATTTGATTCGGCTTTGTGGTGACCTGATCCAGGGTATAATCCGCATTATTATGGTTCGGACTC
62 TTATTCGATTCGGCCTTGTGGTGACCCGATCCAGGGTATAATCCGCATTATTATGGTTCGGACTC
34480 TG
127 TG
*
34482 CTAACC
1 TTAACC
34488 GTTAATTTTG
Statistics
Matches: 233, Mismatches: 26, Indels: 7
0.88 0.10 0.03
Matches are distributed among these distances:
126 1 0.00
127 138 0.59
128 6 0.03
129 1 0.00
131 1 0.00
132 86 0.37
ACGTcount: A:0.22, C:0.16, G:0.14, T:0.48
Consensus pattern (128 bp):
TTAACCACTAACTTTTATTTTATTGCATTTTAACCTTTTATTTATTTATTTATTGTTTCTATTAT
TCGATTCGGCCTTGTGGTGACCCGATCCAGGGTATAATCCGCATTATTATGGTTCGGACTCTG
Found at i:35597 original size:15 final size:16
Alignment explanation
Indices: 35567--35597 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
35557 TCAGTTTTCG
35567 TCTTAAAAATGTTTTT
1 TCTTAAAAATGTTTTT
*
35583 TCTTAAAATTGTTTT
1 TCTTAAAAATGTTTT
35598 AAAAGACGTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.58
Consensus pattern (16 bp):
TCTTAAAAATGTTTTT
Found at i:47838 original size:18 final size:17
Alignment explanation
Indices: 47808--47841 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
47798 TTCCTTTTTT
47808 TTTTCTTTCTTTTCTTG
1 TTTTCTTTCTTTTCTTG
*
47825 TTTTCATTTTTTTTCTT
1 TTTTC-TTTCTTTTCTT
47842 TAAAAATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.03, C:0.15, G:0.03, T:0.79
Consensus pattern (17 bp):
TTTTCTTTCTTTTCTTG
Found at i:50752 original size:29 final size:29
Alignment explanation
Indices: 50670--50752 Score: 80
Period size: 29 Copynumber: 2.7 Consensus size: 29
50660 TATGTCTGTA
*
50670 TATGCCTTTATAATATGTCATGGTTTTGTCTGG
1 TATGCCTTTAT-ATATG-CAT--TTTTGTCTAG
*
50703 TATGCCTTTAAAATATG-ATTTTT-TCCTAG
1 TATGCCTTT-ATATATGCATTTTTGT-CTAG
50732 TATGCCTTTATATATGCATTT
1 TATGCCTTTATATATGCATTT
50753 ACTAATTTAG
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
28 7 0.16
29 20 0.45
31 2 0.05
33 14 0.32
34 1 0.02
ACGTcount: A:0.23, C:0.13, G:0.14, T:0.49
Consensus pattern (29 bp):
TATGCCTTTATATATGCATTTTTGTCTAG
Found at i:51876 original size:20 final size:20
Alignment explanation
Indices: 51851--51888 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
51841 ATGGTTCGAG
* *
51851 TATCGATATTGGTTGAACAA
1 TATCGATACTGGATGAACAA
51871 TATCGATACTGGATGAAC
1 TATCGATACTGGATGAAC
51889 TGAGATGAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.32
Consensus pattern (20 bp):
TATCGATACTGGATGAACAA
Found at i:51994 original size:24 final size:22
Alignment explanation
Indices: 51961--52007 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 22
51951 TGCCCCTCTG
*
51961 ATATCGATACTAGTATCAATACCA
1 ATATCAATACT-GTAT-AATACCA
*
51985 ATATCAATACTGTCTAATACCA
1 ATATCAATACTGTATAATACCA
52007 A
1 A
52008 AAGATTCAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 8 0.38
23 3 0.14
24 10 0.48
ACGTcount: A:0.43, C:0.21, G:0.06, T:0.30
Consensus pattern (22 bp):
ATATCAATACTGTATAATACCA
Found at i:52649 original size:16 final size:16
Alignment explanation
Indices: 52628--52658 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
52618 CACTTTAGTA
*
52628 TGTGTAGCTAAGCTAG
1 TGTGTAGCGAAGCTAG
52644 TGTGTAGCGAAGCTA
1 TGTGTAGCGAAGCTA
52659 CCTTAGTTTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.13, G:0.32, T:0.29
Consensus pattern (16 bp):
TGTGTAGCGAAGCTAG
Found at i:53488 original size:20 final size:21
Alignment explanation
Indices: 53434--53489 Score: 60
Period size: 23 Copynumber: 2.6 Consensus size: 21
53424 GTATGCAAAG
*
53434 TTTCAAAAGGAATGGATCATTT
1 TTTC-AAAGGGATGGATCATTT
*
53456 TTTCCCCAAGGGATGGATCA-TT
1 TTT--CAAAGGGATGGATCATTT
53478 TTTCAAAGGGAT
1 TTTCAAAGGGAT
53490 CAATCCATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
20 8 0.28
22 8 0.28
23 12 0.41
24 1 0.03
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.34
Consensus pattern (21 bp):
TTTCAAAGGGATGGATCATTT
Found at i:55519 original size:19 final size:20
Alignment explanation
Indices: 55477--55521 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
55467 ACCCTACGTG
**
55477 TATCGAAACCCGACAAGCTG
1 TATCGAAACCCGACAAGCAA
*
55497 TATCGAAA-CTGACAAGCAA
1 TATCGAAACCCGACAAGCAA
55516 TATCGA
1 TATCGA
55522 TACTCCTTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.40, C:0.24, G:0.18, T:0.18
Consensus pattern (20 bp):
TATCGAAACCCGACAAGCAA
Found at i:64721 original size:22 final size:21
Alignment explanation
Indices: 64687--64736 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
64677 TAAAACATTA
*
64687 AAAAATAATATATATAATTTAT
1 AAAAATAAAATAT-TAATTTAT
* *
64709 AAAAGTAAAATATTTATTTAT
1 AAAAATAAAATATTAATTTAT
64730 AAAAATA
1 AAAAATA
64737 TCAGAAAATG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 13 0.54
22 11 0.46
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (21 bp):
AAAAATAAAATATTAATTTAT
Found at i:64852 original size:14 final size:13
Alignment explanation
Indices: 64830--64863 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
64820 AATATTAGTG
64830 AATAAAAATAAAT
1 AATAAAAATAAAT
64843 AATAACAAATAAAT
1 AATAA-AAATAAAT
64857 AAATAAA
1 -AATAAA
64864 TACTAATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 5 0.26
14 9 0.47
15 5 0.26
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (13 bp):
AATAAAAATAAAT
Found at i:65755 original size:20 final size:20
Alignment explanation
Indices: 65715--65770 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 20
65705 TCTCTGTTTC
* *
65715 TGGATTGCTCTCTAT-TTTT
1 TGGATTGCTCTATGTCTTTT
* * *
65734 TGGTTTTCTCTCTGTCTTTT
1 TGGATTGCTCTATGTCTTTT
65754 TGGATTGCTCTATGTCT
1 TGGATTGCTCTATGTCT
65771 CCTCCCGTTC
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 12 0.40
20 18 0.60
ACGTcount: A:0.07, C:0.18, G:0.18, T:0.57
Consensus pattern (20 bp):
TGGATTGCTCTATGTCTTTT
Found at i:66235 original size:3 final size:3
Alignment explanation
Indices: 66229--66288 Score: 70
Period size: 3 Copynumber: 20.0 Consensus size: 3
66219 TATTATTTAT
**
66229 TAA TAA T-A TATA TATA TAA TAA T-A TAA TAA TAA TAA TTT TAA TAA
1 TAA TAA TAA TA-A TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
66274 TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA
66289 AGAATGAAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
2 4 0.08
3 39 0.78
4 7 0.14
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (3 bp):
TAA
Found at i:66519 original size:45 final size:45
Alignment explanation
Indices: 66467--66593 Score: 193
Period size: 45 Copynumber: 2.8 Consensus size: 45
66457 CTTGCATTGT
*
66467 AGGTCTTACAGATGACCCGAAGGATTTAAGAACATCATGCACTGA
1 AGGTCTTACAGATGACCCGAAGGTTTTAAGAACATCATGCACTGA
* *
66512 AGGTCTTACAGATGACCTGAAGGTTTTGAGAACATCATGCACTGA
1 AGGTCTTACAGATGACCCGAAGGTTTTAAGAACATCATGCACTGA
* *
66557 AGGGCTTACAGATAACCCGAAGGTTTTGAA-AACATCA
1 AGGTCTTACAGATGACCCGAAGGTTTT-AAGAACATCA
66594 AAAAGCTTCC
Statistics
Matches: 74, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
45 73 0.99
46 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.24
Consensus pattern (45 bp):
AGGTCTTACAGATGACCCGAAGGTTTTAAGAACATCATGCACTGA
Found at i:66714 original size:44 final size:45
Alignment explanation
Indices: 66612--66714 Score: 145
Period size: 45 Copynumber: 2.3 Consensus size: 45
66602 CCGAAGGCTT
* * * *
66612 TTTTGAAAACATCCTGCATTGTAGAGCTTACGGATGACCCAAAGG
1 TTTTGAAAACATCATGCACTGAAGAGCTTACAGATGACCCAAAGG
* *
66657 TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAA-G
1 TTTTGAAAACATCATGCACTGAAGAGCTTACAGATGACCCAAAGG
66701 TTTTGAAAACATCA
1 TTTTGAAAACATCA
66715 AAAATCTTCC
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 15 0.29
45 37 0.71
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.26
Consensus pattern (45 bp):
TTTTGAAAACATCATGCACTGAAGAGCTTACAGATGACCCAAAGG
Found at i:66736 original size:122 final size:121
Alignment explanation
Indices: 66516--66767 Score: 416
Period size: 122 Copynumber: 2.1 Consensus size: 121
66506 CACTGAAGGT
* ** *
66516 CTTACAGATGACCTGAAGGTTTTGAGAACATCATGCACTGAAGGGCTTACAGATAACCCGAAGGT
1 CTTACGGATGACCCAAAGGTTTTGAAAACATCATGCACTGAAGGGCTTACAGATAACCCGAAGGT
*
66581 TTTGAAAACATCAAAAAGCTTCCGAAGGCTTTTTTGAAAACATCCTGCATTGTAGAG
66 TTTGAAAACATCAAAAAGCTTCCGAAGGCTTTTTTGAAAACATCCTACA-TGTAGAG
*
66638 CTTACGGATGACCCAAAGGTTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAA-GT
1 CTTACGGATGACCCAAAGGTTTTGAAAACATCATGCACTGAAGGGCTTACAGATAACCCGAAGGT
* *
66702 TTTGAAAACATCAAAAATCTTCCGAAGGCTTTTTTGAAAACATCCTACATGTAGGG
66 TTTGAAAACATCAAAAAGCTTCCGAAGGCTTTTTTGAAAACATCCTACATGTAGAG
66758 CTTACGGATG
1 CTTACGGATG
Statistics
Matches: 122, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
120 16 0.13
121 49 0.40
122 57 0.47
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.26
Consensus pattern (121 bp):
CTTACGGATGACCCAAAGGTTTTGAAAACATCATGCACTGAAGGGCTTACAGATAACCCGAAGGT
TTTGAAAACATCAAAAAGCTTCCGAAGGCTTTTTTGAAAACATCCTACATGTAGAG
Done.