Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005695.1 Hibiscus syriacus cultivar Beakdansim tig00013321_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70450

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1631--1711
24
3.5
24
70
20
75
22
24
23
29
1.99
1632--1734
44
2.3
44
82
9
138
22
26
22
29
1.99
2387--2439
21
2.5
21
100
0
106
15
49
5
30
1.67
4345--4504
65
2.5
63
85
6
205
30
24
18
26
1.98
4470--4505
18
2.1
18
89
5
56
33
22
16
27
1.95
7001--7192
100
1.9
100
84
1
260
34
8
11
44
1.72
7114--7345
76
3.0
77
85
4
310
32
10
11
45
1.74
7203--7523
177
1.8
176
87
4
486
33
9
13
43
1.76
7012--7856
253
3.3
251
85
4
1036
33
11
11
43
1.77
7379--7607
77
3.0
77
88
1
343
31
12
13
41
1.83
7517--7700
100
1.8
100
84
0
251
31
11
12
44
1.79
7617--8061
155
2.9
154
81
5
501
34
12
10
42
1.77
7617--8081
76
6.1
75
76
10
406
33
12
10
43
1.76
8016--8207
100
1.9
101
83
3
253
36
8
9
44
1.68
17579--17609
12
2.5
12
94
5
53
48
25
0
25
1.52
19597--19665
19
3.8
18
76
18
72
69
0
4
26
1.07
32164--32380
109
2.0
107
96
1
398
41
23
11
23
1.87
38215--38263
20
2.4
20
83
12
64
57
10
12
20
1.64
49118--49147
15
2.0
15
93
0
51
13
16
50
20
1.78
49621--49650
15
2.0
15
100
0
60
20
26
13
40
1.89
55946--55996
23
2.2
23
85
0
66
45
25
9
19
1.81
56836--57012
87
2.0
87
97
2
338
50
15
6
28
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67063--67153
30
3.0
30
84
9
130
43
4
7
43
1.53
67588--67638
21
2.5
20
72
12
50
47
0
0
52
1.00
69460--69500
21
2.0
21
90
9
66
26
19
0
53
1.45
69952--69989
20
1.9
20
84
10
51
42
18
10
28
1.83

Tables:   1

The End!