genome.fa.s5696.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005696.1 Hibiscus syriacus cultivar Beakdansim tig00013326_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101084

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1881--1953	24	3.0	24	92	4	112	20	16	28	34	1.94
6228--6261	18	1.9	17	88	5	50	67	0	0	32	0.91
6311--6355	21	2.1	22	87	4	65	53	8	0	37	1.32
6484--6512	14	2.0	15	93	6	51	41	6	10	41	1.66
6396--6575	73	2.4	74	83	9	202	41	7	6	45	1.58
6361--6574	38	5.6	38	72	14	131	40	7	6	45	1.59
6616--6665	2	25.0	2	90	8	75	46	4	0	50	1.20
8451--8522	35	2.1	35	89	0	108	50	6	11	31	1.65
8754--8793	18	2.3	18	83	8	57	25	5	2	67	1.23
8927--9011	2	44.5	2	73	17	65	41	2	1	55	1.20
9296--9374	40	2.1	37	86	11	106	32	3	7	55	1.46
9434--9485	9	5.6	9	78	15	52	17	7	0	75	1.03
9434--9485	14	3.7	14	82	12	54	17	7	0	75	1.03
20487--21252	106	7.4	106	82	8	905	34	22	19	24	1.96
20914--21107	94	2.1	92	93	1	325	35	22	18	24	1.96
21739--21808	35	2.0	35	100	0	140	40	11	20	28	1.87
22183--22222	18	2.3	18	83	8	57	25	5	2	67	1.23
22474--22498	2	12.5	2	100	0	50	48	0	0	52	1.00
22781--22821	2	20.5	2	100	0	82	48	0	0	51	1.00
22870--22935	18	3.7	18	77	18	66	16	9	0	74	1.06
22905--22947	18	2.4	18	88	0	59	13	13	2	69	1.28
25871--25913	15	2.8	16	78	7	52	46	0	20	32	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31633--31674	20	2.1	20	90	0	66	50	4	2	42	1.36
41445--41536	22	4.3	22	90	1	125	5	22	31	40	1.77
41445--41536	43	2.1	43	86	4	123	5	22	31	40	1.77
42142--42394	20	12.5	20	84	5	249	41	23	17	18	1.90
43084--43130	24	2.0	24	86	0	67	27	17	19	36	1.93
45587--45713	33	3.8	34	82	7	152	46	20	18	14	1.84
45651--45770	52	2.3	52	97	1	222	46	17	20	15	1.84
45620--45770	19	8.7	19	71	21	134	46	18	19	15	1.84
45911--45947	14	2.6	14	91	0	65	45	21	0	32	1.52
45998--46031	14	2.4	14	90	0	59	44	20	0	35	1.52
46251--46287	18	2.1	18	89	0	56	32	5	10	51	1.60
46243--46295	24	2.2	24	86	0	70	35	3	13	47	1.61
46543--46629	39	2.2	39	97	0	165	47	20	14	17	1.83
47446--47492	20	2.4	19	89	10	76	55	10	17	17	1.69
47627--47673	20	2.4	19	82	10	67	53	10	17	19	1.72
47636--47678	20	2.3	19	88	11	63	51	11	16	20	1.75
49897--49961	21	3.1	21	93	0	103	41	10	30	16	1.83
49995--50060	33	2.0	33	90	0	105	28	0	48	22	1.51
51855--51903	19	2.6	19	93	0	80	30	2	10	57	1.43
52022--53000	200	4.9	200	97	0	1877	35	15	17	31	1.91
54446--54509	6	10.7	6	81	0	65	39	7	32	20	1.81
54446--54509	18	3.6	18	82	0	92	39	7	32	20	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54446--54509	12	5.3	12	82	0	83	39	7	32	20	1.81
54463--54537	3	25.0	3	80	0	69	36	8	33	22	1.84
54472--54533	21	3.0	21	81	9	81	35	9	33	20	1.86
54446--54518	18	4.1	19	77	10	82	38	9	32	19	1.84
57233--57343	19	6.0	19	82	13	142	46	16	21	15	1.83
57333--57410	33	2.4	33	97	0	147	12	24	20	42	1.87
57333--57410	14	4.7	18	71	24	64	12	24	20	42	1.87
57517--57553	14	2.6	14	91	0	65	45	21	0	32	1.52
59435--59500	19	3.4	19	87	2	87	46	27	15	10	1.78
59505--59569	19	3.7	19	76	19	86	44	18	23	13	1.85
59489--59564	33	2.3	33	97	0	143	47	19	21	11	1.81
59565--59731	19	9.3	19	76	13	156	9	16	26	46	1.78
59582--59639	14	3.8	14	73	20	53	8	15	27	48	1.74
59565--59694	33	3.8	33	84	5	161	8	16	27	47	1.75
59565--59731	33	4.7	35	81	8	153	9	16	26	46	1.78
61647--61708	20	3.2	20	81	4	90	46	17	22	12	1.82
61645--61737	19	5.1	19	75	15	97	45	19	23	11	1.83
61645--61732	33	2.4	37	89	10	130	46	19	22	11	1.81
61757--61833	21	3.7	21	79	6	102	11	22	18	48	1.80
61913--61983	33	2.2	33	94	0	124	47	16	23	11	1.79
61935--61983	14	2.8	19	65	28	54	46	20	24	8	1.77
62365--62518	20	7.6	20	87	7	220	19	19	27	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62362--62583	82	2.7	80	79	10	218	21	17	26	34	1.95
65620--66019	200	2.0	199	97	1	748	26	24	16	32	1.96
66585--66691	52	2.0	53	94	5	191	28	8	7	56	1.56
76399--76439	21	2.0	21	85	9	57	73	2	2	21	1.07
98736--98760	8	3.1	8	100	0	50	24	24	12	40	1.88
99346--99375	12	2.5	12	100	0	60	33	26	0	40	1.57
100464--100495	15	2.0	17	88	11	50	18	18	0	62	1.33

Tables:   1

The End!