Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005698.1 Hibiscus syriacus cultivar Beakdansim tig00013328_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59685

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2279--2337
31
1.9
31
92
0
100
20
22
23
33
1.97
6767--6828
31
2.0
31
90
0
97
19
22
24
33
1.97
6819--6877
31
1.9
31
100
0
118
32
20
20
27
1.97
17058--17108
21
2.5
20
83
3
57
33
35
5
25
1.80
28415--28489
2
37.5
2
100
0
150
50
0
0
49
1.00
28516--28864
174
2.0
174
98
0
671
51
6
8
33
1.57
30561--30601
21
2.0
21
90
0
64
31
29
21
17
1.96
30630--30674
22
2.0
22
82
4
54
31
31
26
11
1.91
32137--32456
103
3.1
103
94
0
561
26
13
23
37
1.91
32473--32529
23
2.5
23
85
0
69
22
26
24
26
2.00
32463--32540
23
3.3
23
76
1
57
25
20
20
33
1.97
35823--35865
22
1.9
22
85
4
59
34
34
20
9
1.85
37328--37656
103
3.2
103
94
0
570
27
13
24
35
1.92
37664--37724
23
2.7
23
89
0
95
19
26
27
26
1.99
42215--42249
10
3.5
10
96
0
61
17
11
11
60
1.59
42296--42341
23
2.0
23
86
0
65
56
19
10
13
1.66
42441--42481
21
1.9
22
85
5
57
21
2
7
68
1.26
42588--42626
10
3.9
10
89
0
60
56
12
12
17
1.67
42570--42628
20
2.7
23
79
17
79
54
15
15
15
1.72
54732--54779
22
2.3
20
86
10
62
4
25
2
68
1.18
55299--55334
3
11.3
3
88
11
54
63
0
0
36
0.94
55519--56006
131
3.7
131
82
2
534
26
16
30
26
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55519--56006
261
1.9
262
83
3
642
26
16
30
26
1.97
56085--56124
21
2.0
20
85
5
53
45
15
17
22
1.85
56091--56198
36
3.2
34
67
20
82
37
16
23
22
1.93
56111--56212
30
3.2
30
67
24
82
33
15
27
23
1.95
56011--56398
66
5.9
66
83
4
403
38
13
21
26
1.90
56511--56596
36
2.4
35
80
3
91
40
10
16
32
1.82
56871--56901
16
1.9
16
100
0
62
16
0
25
58
1.38
57932--57962
2
15.5
2
100
0
62
48
0
0
51
1.00

Tables:   1

The End!