Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000057.1 Hibiscus syriacus cultivar Beakdansim tig00000086_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74031

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2482--2522
21
2.0
21
90
0
64
39
9
17
34
1.82
3717--3760
20
2.2
20
100
0
88
40
38
4
15
1.68
6039--6084
24
1.9
24
86
8
67
21
15
17
45
1.85
7082--7140
14
4.1
15
78
6
59
27
23
28
20
1.99
7083--7141
29
2.1
28
87
3
82
25
25
28
20
1.99
10546--10593
26
1.9
25
87
8
71
20
14
18
45
1.85
11564--11627
20
3.2
20
84
0
83
45
18
17
18
1.86
11631--11685
14
3.9
14
80
4
74
25
21
27
25
2.00
11627--11685
28
2.1
29
90
3
93
25
22
28
23
1.99
15663--15743
42
2.0
42
85
2
110
37
22
16
24
1.93
15905--16005
42
2.4
41
88
1
139
37
21
18
21
1.94
15381--16362
257
3.9
253
85
5
1247
35
17
16
31
1.92
17631--17770
37
3.8
37
75
11
128
30
23
15
31
1.95
25073--25126
11
4.4
12
78
19
58
9
25
0
64
1.23
25085--25138
26
2.2
23
87
9
72
12
22
1
62
1.39
29837--29913
36
2.1
36
100
0
154
31
12
24
31
1.93
29901--29985
32
2.7
32
94
0
143
34
14
22
29
1.93
35600--35633
18
1.9
17
88
5
50
14
5
0
79
0.91
43666--43708
20
2.2
20
87
8
61
60
16
2
20
1.46
48353--48408
21
2.7
21
80
0
67
32
8
19
39
1.83
51141--51251
39
2.8
38
76
10
107
44
0
17
37
1.55
56936--56989
20
2.7
20
85
2
72
33
14
22
29
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60860--60932
36
2.0
36
91
0
119
16
21
26
35
1.94
62317--62412
50
1.9
51
89
2
149
25
25
21
28
1.99
72989--73018
3
10.0
3
92
0
51
63
0
33
3
1.11

Tables:   1

The End!