genome.fa.s5700.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005700.1 Hibiscus syriacus cultivar Beakdansim tig00013330_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60731

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1781--1812	13	2.5	13	100	0	64	31	9	21	37	1.85
21054--21105	27	2.0	27	85	7	72	59	0	1	38	1.08
24363--24395	5	6.8	5	96	3	59	63	0	0	36	0.95
24948--24980	17	1.9	18	88	11	52	60	18	9	12	1.57
26344--26387	20	2.2	20	83	0	52	13	13	9	63	1.51
26328--26376	20	2.5	20	96	0	89	12	14	8	65	1.47
27518--27554	17	2.2	17	100	0	74	24	16	32	27	1.96
27538--27604	24	2.8	24	86	8	93	26	25	20	26	1.99
30067--30169	15	6.5	15	77	15	100	44	0	2	52	1.16
30067--30126	30	2.0	30	96	0	111	51	0	0	48	1.00
30122--30216	22	4.2	22	67	13	68	38	0	9	51	1.34
30134--30169	14	2.5	14	95	4	63	38	0	0	61	0.96
30149--30300	32	5.4	31	70	28	142	36	1	10	51	1.45
30067--30224	69	2.3	67	82	6	185	42	0	5	51	1.30
30149--30846	54	12.8	54	70	17	324	33	0	13	52	1.44
30257--30846	80	7.6	80	72	17	361	33	0	13	53	1.43
30203--30568	134	2.7	134	94	0	633	34	0	11	52	1.44
30327--30434	32	3.7	32	72	23	110	34	0	11	54	1.36
30360--30402	22	2.0	22	100	0	86	34	0	13	51	1.42
30465--30686	32	7.6	32	73	19	232	34	0	12	52	1.42
30147--30783	188	3.3	184	76	15	580	34	0	12	52	1.44
30525--30577	14	3.5	14	72	18	52	35	0	5	58	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30580--30622	22	2.0	22	90	0	68	32	2	13	51	1.54
30657--30704	22	2.4	18	73	23	51	33	0	14	52	1.42
30382--30846	252	1.9	246	90	3	752	32	0	13	52	1.44
30793--30856	32	2.0	32	100	0	128	34	0	12	53	1.39
30871--30929	31	1.9	31	89	0	91	44	10	5	40	1.60
33551--33649	38	2.6	36	77	13	101	34	22	8	35	1.84
34777--34806	10	3.0	10	95	0	51	0	26	20	53	1.46
35024--35078	2	27.5	2	100	0	110	49	0	0	50	1.00
44148--44400	126	2.0	125	89	2	382	33	11	17	37	1.86
44358--44451	41	2.3	41	90	0	152	30	18	19	31	1.95
49600--49658	25	2.4	25	97	2	111	42	3	22	32	1.70
50214--50264	21	2.4	21	100	0	102	49	3	25	21	1.67
50949--50991	18	2.4	18	80	0	50	30	13	2	53	1.53
56109--56143	17	2.1	16	89	5	52	42	17	0	40	1.49
56400--56470	18	3.9	18	88	0	106	25	32	22	19	1.98
57367--57404	20	1.9	20	88	0	58	28	18	21	31	1.97
59674--59795	45	2.7	43	83	9	163	27	24	18	29	1.98
59764--59812	19	2.6	19	84	9	57	24	28	20	26	1.99

Tables:   1

The End!