genome.fa.s5702.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005702.1 Hibiscus syriacus cultivar Beakdansim tig00013335_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49178

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4177--4228	20	2.6	20	96	0	95	34	17	26	21	1.95
4852--4961	21	5.0	21	72	6	78	23	16	25	34	1.95
4869--4963	23	4.3	22	74	11	88	25	16	24	33	1.96
11752--11804	23	2.3	23	86	0	70	22	16	26	33	1.96
12271--12311	20	2.0	20	86	9	57	31	0	12	56	1.36
16965--17004	21	1.9	21	89	0	62	30	7	20	42	1.79
18855--18892	20	1.9	20	100	0	76	21	15	31	31	1.94
19586--19973	45	8.6	45	88	1	537	23	20	14	40	1.90
19600--19973	134	2.8	135	89	1	563	24	21	14	40	1.90
25537--25872	45	7.7	45	78	7	354	22	20	14	41	1.89
25779--25847	33	2.1	33	94	0	120	23	20	14	42	1.89
29506--29538	15	2.3	15	89	5	50	48	15	0	36	1.45
32640--32756	38	2.9	38	73	22	103	64	6	0	28	1.18
33101--33202	18	5.6	18	72	14	75	30	2	7	58	1.41
33096--33196	37	2.8	36	80	5	123	27	2	9	59	1.44
34289--34369	30	2.7	30	82	3	101	40	20	18	19	1.91
35745--35863	30	4.0	30	77	7	100	39	13	21	26	1.90
35787--35863	30	2.5	31	81	6	104	38	12	25	22	1.90
42557--42605	20	2.4	20	79	3	53	48	12	8	30	1.69
42757--42878	30	4.1	30	87	2	165	35	18	24	21	1.96
42757--42878	60	2.0	60	88	3	183	35	18	24	21	1.96
43433--43467	13	2.7	13	95	0	61	45	22	17	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45388--45588	110	1.8	109	89	3	312	36	23	13	26	1.92

Tables:   1

The End!