Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005706.1 Hibiscus syriacus cultivar Beakdansim tig00013341_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  142956

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4792--4819
3
9.3
3
100
0
56
67
0
32
0
0.91
6871--6919
22
2.3
22
79
6
57
28
14
16
40
1.87
9791--9900
20
5.6
20
89
1
150
35
10
20
33
1.87
10300--10365
33
2.0
33
84
0
87
25
15
28
30
1.96
13234--13290
19
3.0
20
84
5
64
35
14
19
31
1.91
13248--13290
20
2.2
20
87
4
61
32
16
20
30
1.95
13711--13775
33
2.0
32
84
3
85
24
15
29
30
1.96
15630--15654
6
4.2
6
100
0
50
84
0
0
16
0.63
18124--18156
16
1.9
17
88
11
50
36
0
3
60
1.12
26167--26267
24
4.3
23
75
5
94
20
24
20
33
1.97
26167--26267
47
2.1
47
85
7
134
20
24
20
33
1.97
37849--37908
23
2.9
20
87
9
77
21
33
26
18
1.96
42770--42881
23
4.8
24
78
10
99
16
22
23
37
1.94
43560--43608
15
3.2
16
75
13
50
30
8
10
51
1.65
43756--43805
23
2.2
23
92
0
82
60
8
4
28
1.43
45774--46059
143
2.0
143
93
1
493
34
12
12
40
1.80
46436--46474
19
2.1
19
85
9
53
28
10
25
35
1.89
50245--50341
24
3.7
27
78
17
98
41
4
0
54
1.19
50282--50361
26
3.1
26
81
10
76
38
2
0
58
1.11
50500--50567
30
2.2
31
86
2
102
50
13
8
27
1.71
51668--51716
23
2.1
23
96
0
89
65
20
0
14
1.27
51775--51829
22
2.6
21
83
8
67
56
1
3
38
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51787--51829
22
2.0
21
90
4
68
60
2
0
37
1.10
51856--51910
28
2.0
28
85
7
76
56
1
3
38
1.28
53525--53582
23
2.5
23
91
0
89
36
22
10
31
1.88
67658--67748
20
4.5
20
67
22
64
35
8
28
27
1.87
67616--67748
61
2.2
61
100
0
266
35
7
27
29
1.84
68188--68343
72
2.2
72
83
0
186
38
14
21
25
1.92
68260--68649
46
8.5
46
84
2
487
41
15
22
21
1.90
68300--68453
26
6.8
21
69
21
71
38
14
25
20
1.91
71934--71979
8
5.6
8
80
14
58
58
2
0
39
1.10
71934--71962
11
2.7
11
94
5
51
62
0
0
37
0.96
76634--76806
95
1.8
95
80
7
208
36
11
25
26
1.90
77147--77205
26
2.3
26
93
0
109
49
11
15
23
1.77
77173--77573
46
8.7
46
87
0
561
39
15
22
21
1.92
91905--91941
14
2.5
15
91
4
58
27
2
48
21
1.63
99296--99322
13
2.1
13
100
0
54
44
25
7
22
1.79
103494--103537
2
22.0
2
100
0
88
50
0
0
50
1.00
104776--104809
16
2.1
16
100
0
68
47
0
17
35
1.48
116891--116970
39
2.1
39
92
0
133
27
23
15
33
1.94
131271--131505
46
5.1
46
87
1
344
45
10
22
21
1.81
131271--131505
93
2.5
92
88
0
353
45
10
22
21
1.81
137673--137852
96
1.9
94
86
4
254
37
14
23
23
1.92
138282--138498
20
9.7
20
68
20
110
44
9
22
23
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
138271--138648
46
8.4
46
84
6
488
45
10
20
23
1.82
138491--138615
37
3.1
37
72
19
124
43
12
20
23
1.86
138528--138680
26
6.3
25
70
18
101
45
12
21
20
1.84
138400--138648
128
1.9
130
88
1
376
45
11
20
22
1.83
138446--138615
83
2.0
83
89
2
261
44
11
20
24
1.84
138528--138649
47
2.6
45
83
5
145
45
12
21
21
1.84
138568--138710
72
2.0
73
87
4
209
46
10
21
21
1.81

Tables:   1

The End!