genome.fa.s5707.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005707.1 Hibiscus syriacus cultivar Beakdansim tig00013342_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91969

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4636--4665	13	2.3	13	100	0	60	36	26	6	30	1.82
6794--6861	31	2.2	32	81	7	77	39	4	8	47	1.55
7708--7756	3	16.3	3	91	0	53	8	34	2	55	1.41
13750--13793	21	2.1	21	83	8	54	45	11	9	34	1.72
13997--14051	25	2.2	25	93	0	92	34	10	10	43	1.75
18810--18846	19	1.9	19	88	0	56	32	27	16	24	1.96
18914--18985	21	3.5	21	77	11	94	37	26	16	19	1.93
18914--19002	41	2.2	41	91	0	142	37	26	15	20	1.93
19820--19873	24	2.2	24	86	0	72	22	20	18	38	1.93
21080--21143	23	2.8	22	85	4	83	26	26	26	20	1.99
27829--27890	21	2.8	22	73	9	63	30	27	20	20	1.98
30733--30787	22	2.6	22	85	5	78	25	12	41	20	1.87
30934--31088	20	7.7	20	69	11	93	26	18	21	34	1.96
30935--31009	21	3.7	20	77	12	80	22	17	24	36	1.95
30936--31070	41	3.3	40	83	7	157	24	17	21	36	1.95
30997--31088	40	2.3	40	94	0	166	28	19	19	32	1.96
45821--45914	48	2.0	48	89	0	143	21	24	23	30	1.99
48434--48499	7	9.4	7	98	0	123	13	13	56	16	1.68
50514--50574	22	2.8	22	100	0	122	44	13	9	32	1.76
62322--62416	21	4.6	21	80	2	102	24	16	25	33	1.96
62469--62508	19	2.1	19	90	0	62	20	15	30	35	1.93
62467--62516	19	2.5	19	80	9	55	18	18	30	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62616--62649	10	3.1	11	91	8	52	38	44	17	0	1.49
63146--63200	6	9.2	6	100	0	110	0	16	49	34	1.46
63294--63383	41	2.2	41	93	0	153	40	22	17	20	1.92
63375--63549	41	4.3	40	80	7	133	38	24	20	17	1.92
63396--63569	20	8.6	20	71	16	135	40	22	21	14	1.90
63334--63612	102	2.7	102	80	9	311	38	23	18	19	1.93
63410--63505	19	4.8	19	75	11	86	42	19	20	16	1.89
63316--63526	22	10.2	22	70	14	87	39	23	18	18	1.92
63558--63611	21	2.6	21	90	0	90	29	25	16	27	1.97
63294--63569	143	1.9	143	91	2	448	39	22	19	17	1.92
69758--69791	2	17.5	2	93	6	61	50	0	0	50	1.00
71916--71951	18	2.0	18	88	0	54	2	19	30	47	1.64

Tables:   1

The End!