Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005708.1 Hibiscus syriacus cultivar Beakdansim tig00013345_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80394

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3237--3287
18
2.8
18
80
16
61
39
1
1
56
1.22
6867--6947
32
2.5
33
95
4
155
27
11
17
44
1.82
7997--8036
16
2.4
17
87
8
55
75
2
17
5
1.10
11489--11524
12
3.0
12
91
0
54
58
16
13
11
1.63
12965--13000
18
2.0
18
88
0
54
30
33
16
19
1.94
15506--15559
22
2.5
22
84
6
74
14
12
31
40
1.84
26962--27013
21
2.5
21
90
0
77
34
1
13
50
1.53
26982--27017
14
2.6
15
83
16
51
30
0
19
50
1.48
37452--37524
37
2.0
36
92
7
121
46
15
5
32
1.68
46513--46587
30
2.5
30
95
0
132
34
10
33
21
1.88
46825--46878
25
2.2
24
83
6
72
20
14
38
25
1.91
47817--47864
18
2.7
18
93
3
80
0
12
14
72
1.11
51348--51509
88
1.8
89
86
4
238
26
11
18
43
1.83
51440--51729
71
4.2
71
77
5
234
25
12
18
42
1.86
55384--55422
15
2.5
15
87
4
51
10
7
23
58
1.56
56061--56107
2
23.5
2
100
0
94
48
0
0
51
1.00
57894--57918
12
2.1
12
100
0
50
52
32
16
0
1.44
57906--57956
20
2.5
20
90
0
84
47
25
13
13
1.80
65961--66213
140
1.8
140
98
0
488
43
20
19
16
1.88
68261--68292
8
3.9
8
95
4
55
15
0
0
84
0.63
68822--68847
12
2.2
12
100
0
52
38
0
7
53
1.30
79670--79714
23
1.9
24
86
4
65
35
6
0
57
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
79929--79997
36
2.0
34
85
5
93
55
11
8
24
1.64

Tables:   1

The End!