Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005709.1 Hibiscus syriacus cultivar Beakdansim tig00013350_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65936

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1751--1791
2
20.5
2
100
0
82
51
0
0
48
1.00
11856--11882
2
13.5
2
100
0
54
48
0
0
51
1.00
21028--21268
125
1.9
124
84
4
315
51
5
2
40
1.40
22899--22981
39
2.1
39
90
0
130
27
9
28
33
1.88
25553--25606
28
1.9
28
84
0
72
55
18
0
25
1.43
27121--27206
40
2.2
38
83
8
109
33
10
25
30
1.89
27560--27617
21
2.7
22
76
7
57
24
29
22
24
1.99
27981--28025
18
2.4
19
81
3
56
35
0
4
60
1.17
29028--29085
29
2.0
28
87
9
82
48
0
12
39
1.40
29538--29609
36
2.0
35
86
7
101
6
29
0
63
1.20
29537--29609
25
2.9
25
86
8
96
6
28
0
64
1.19
32691--32748
20
2.6
22
89
10
84
25
22
20
31
1.98
32736--32876
64
2.2
63
80
7
151
25
24
18
31
1.97
36895--36952
20
2.6
22
89
10
84
25
22
20
31
1.98
36959--37062
45
2.3
45
81
4
122
27
19
18
34
1.95
39432--39473
2
21.0
2
100
0
84
50
0
0
50
1.00
41111--41155
21
2.1
22
87
4
65
40
0
0
60
0.97
41117--41161
20
2.2
20
84
7
56
42
2
0
55
1.12
41117--41162
21
2.2
20
84
7
56
41
2
0
56
1.11
41746--41882
60
2.3
59
82
3
157
34
16
13
35
1.88
43258--43318
30
2.0
30
84
6
79
45
4
4
44
1.46
53577--53657
41
2.0
41
87
4
119
38
1
12
48
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57999--58055
30
2.0
27
83
10
69
40
3
3
52
1.35
59258--59288
10
3.1
10
100
0
62
29
19
0
51
1.47
64633--64657
5
5.0
5
100
0
50
20
20
20
40
1.92

Tables:   1

The End!