Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000571.1 Hibiscus syriacus cultivar Beakdansim tig00001117_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  128199

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4884--4926
21
2.0
21
86
0
59
30
27
25
16
1.97
4955--4999
22
2.0
22
91
4
72
28
33
26
11
1.91
6285--6497
103
2.1
103
94
0
372
26
13
23
36
1.92
6527--6581
23
2.4
23
81
0
65
27
23
21
27
1.99
15208--15285
3
26.0
3
100
0
156
33
0
0
66
0.92
16071--16108
17
2.2
17
100
0
76
26
0
18
55
1.43
23403--23458
23
2.6
21
78
15
60
33
3
0
62
1.12
26648--26987
170
2.0
170
98
0
662
32
17
19
30
1.95
34411--34445
18
1.9
18
94
0
61
28
31
22
17
1.96
34774--34824
18
2.8
17
82
11
57
49
23
0
27
1.51
38801--38851
18
2.8
17
82
11
57
49
23
0
27
1.51
40811--40851
20
2.0
21
95
4
75
24
19
21
34
1.97
41609--41657
20
2.5
21
83
9
59
48
4
14
32
1.62
44972--45033
18
3.4
18
71
20
65
37
14
11
37
1.82
44952--45064
37
3.1
37
93
2
183
36
15
11
37
1.83
44968--45081
21
5.9
21
71
17
95
34
16
8
40
1.80
45596--45638
16
2.8
15
80
19
61
48
2
0
48
1.14
60901--60935
7
4.7
7
86
13
52
25
45
0
28
1.54
60899--60935
16
2.3
16
95
0
65
24
45
0
29
1.53
76597--77518
55
16.9
55
91
1
1349
27
24
15
31
1.96
78519--78557
20
1.9
20
84
5
51
2
15
2
79
0.95
78530--78586
11
4.8
12
77
10
55
7
15
0
77
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
116159--116198
21
1.9
21
84
0
53
55
2
0
42
1.13
118162--118190
2
14.5
2
100
0
58
48
0
0
51
1.00
118465--118495
16
1.9
16
93
0
53
41
0
6
51
1.27
118626--118676
15
3.3
15
73
10
57
25
33
21
19
1.97
118628--118697
32
2.2
32
86
0
95
27
30
21
21
1.98
122735--122773
18
2.1
19
85
4
53
23
7
5
64
1.40

Tables:   1

The End!