genome.fa.s5710.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005710.1 Hibiscus syriacus cultivar Beakdansim tig00013351_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  144954

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10537--10593	28	2.1	26	83	6	69	8	15	15	59	1.59
12624--12660	14	2.7	14	91	4	58	21	45	0	32	1.52
15281--15347	33	2.1	33	86	13	95	56	0	23	19	1.42
15871--15921	19	2.6	20	90	3	77	43	5	11	39	1.66
25128--25166	21	1.9	20	84	5	51	61	0	25	12	1.31
25317--25427	35	3.2	35	83	2	134	32	4	34	28	1.78
30387--30444	15	3.6	16	77	11	57	65	0	17	17	1.27
30387--30444	16	3.6	16	79	9	57	65	0	17	17	1.27
31058--31169	35	3.2	35	83	2	145	30	2	36	30	1.71
31106--31163	13	4.7	13	70	12	50	31	0	39	29	1.57
44359--44407	19	2.5	20	78	21	59	67	0	8	24	1.18
44819--44870	19	2.6	21	81	6	63	46	7	13	32	1.72
47912--47956	18	2.3	19	85	11	56	66	0	8	24	1.20
47912--47960	19	2.5	20	78	15	57	67	0	8	24	1.18
48139--48188	21	2.4	21	76	6	57	24	26	14	36	1.93
48195--48250	21	2.7	21	100	0	112	39	16	23	21	1.92
48260--48326	21	3.2	21	76	4	64	22	23	16	37	1.94
48316--48374	20	3.0	20	85	5	75	40	22	16	20	1.91
48339--48395	21	2.8	21	89	2	80	42	17	21	19	1.90
48930--48986	14	3.7	14	72	20	51	10	22	21	45	1.82
48913--49005	33	2.8	33	93	0	159	10	20	20	48	1.79
48937--49071	20	7.2	20	70	21	112	11	21	17	49	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48970--49073	40	2.6	40	84	1	129	12	22	15	50	1.77
50758--51062	94	3.3	94	90	3	451	22	12	17	47	1.81
51506--51572	21	3.2	21	64	6	55	26	35	17	19	1.94
51454--51572	42	2.8	42	83	5	125	25	36	15	22	1.94
56564--56593	11	2.7	11	100	0	60	13	10	6	70	1.34
56589--56636	15	3.4	14	77	11	53	0	18	2	79	0.84
56899--56952	23	2.5	22	82	14	67	66	0	7	25	1.17
59279--59359	19	4.3	19	88	3	103	45	22	17	14	1.84
59359--59452	33	2.8	33	93	0	152	12	23	18	45	1.83
59394--59452	19	3.4	19	73	22	74	13	22	18	45	1.84
59446--59518	20	3.6	20	70	17	51	23	16	24	35	1.95
61976--62029	24	2.2	24	90	0	81	40	16	16	25	1.89
62828--62924	21	4.7	21	74	12	92	18	16	22	42	1.89
62748--62885	41	3.4	41	77	6	145	21	18	24	35	1.95
62768--62944	20	8.7	20	75	10	117	22	18	24	35	1.95
62830--62968	62	2.2	62	94	0	251	19	17	21	41	1.91
62871--62985	21	5.5	21	79	6	119	21	20	19	38	1.94
62830--62985	62	2.5	62	89	2	206	20	19	21	39	1.93
62975--63049	21	3.7	20	74	15	64	34	17	24	24	1.96
63603--63654	19	2.6	21	90	6	81	46	7	13	32	1.72
74941--74984	17	2.6	17	92	0	70	20	27	18	34	1.96
76895--76924	16	1.9	15	93	6	51	36	6	0	56	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81039--81095	2	29.0	2	96	3	107	50	0	0	49	1.00
84027--84067	5	8.2	5	84	10	57	0	17	0	82	0.66
84026--84057	9	3.4	9	91	8	55	0	12	0	87	0.54
84024--84084	25	2.5	25	79	12	72	1	18	1	78	0.91
92901--92951	19	2.5	21	78	12	61	41	9	3	45	1.56
95529--95575	22	2.1	23	96	4	87	36	19	17	27	1.93
95532--95578	23	2.1	22	92	4	76	36	17	21	25	1.94
105783--105829	23	2.1	23	92	4	78	38	19	14	27	1.91
108330--108362	13	2.5	13	100	0	66	27	9	30	33	1.88
111409--111463	23	2.3	25	84	6	78	61	12	16	9	1.55
123470--123499	13	2.4	13	94	5	53	26	30	0	43	1.55
132535--132584	23	2.1	24	88	3	75	14	14	12	60	1.60
134876--134930	23	2.3	25	84	6	78	61	12	16	9	1.55
138493--138530	21	1.9	19	85	15	51	23	21	13	42	1.88
138861--138947	34	2.5	36	84	3	115	36	3	33	26	1.73
141116--141166	20	2.6	20	93	3	86	35	13	5	45	1.68

Tables:   1

The End!