Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005711.1 Hibiscus syriacus cultivar Beakdansim tig00013352_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 162971
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.32
Found at i:1490 original size:35 final size:36
Alignment explanation
Indices: 1451--1577 Score: 121
Period size: 36 Copynumber: 3.6 Consensus size: 36
1441 GGGCTGCAGA
**
1451 TGGTGCATTAATGCTTGGTTTAGTCTTGGAT-GAGG
1 TGGTGCATTAATGCTTGGTTTAACCTTGGATGGAGG
* *
1486 TGGTGCATTAGTGCTTGTTTTAACCTTGGATGGAGG
1 TGGTGCATTAATGCTTGGTTTAACCTTGGATGGAGG
*** * * * *
1522 TGGTGCATCGTTGCTTGGGTTAGCGTTGGATGGAGT
1 TGGTGCATTAATGCTTGGTTTAACCTTGGATGGAGG
* **
1558 TGGTGCGTTGTTGCTTGGTT
1 TGGTGCATTAATGCTTGGTT
1578 CAGCCTTAAT
Statistics
Matches: 76, Mismatches: 15, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
35 27 0.36
36 49 0.64
ACGTcount: A:0.13, C:0.10, G:0.37, T:0.40
Consensus pattern (36 bp):
TGGTGCATTAATGCTTGGTTTAACCTTGGATGGAGG
Found at i:1529 original size:36 final size:35
Alignment explanation
Indices: 1451--1529 Score: 113
Period size: 35 Copynumber: 2.2 Consensus size: 35
1441 GGGCTGCAGA
**
1451 TGGTGCATTAATGCTTGGTTTAGTCTTGGATGAGG
1 TGGTGCATTAATGCTTGGTTTAACCTTGGATGAGG
* *
1486 TGGTGCATTAGTGCTTGTTTTAACCTTGGATGGAGG
1 TGGTGCATTAATGCTTGGTTTAACCTTGGAT-GAGG
1522 TGGTGCAT
1 TGGTGCAT
1530 CGTTGCTTGG
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
35 27 0.69
36 12 0.31
ACGTcount: A:0.16, C:0.10, G:0.34, T:0.39
Consensus pattern (35 bp):
TGGTGCATTAATGCTTGGTTTAACCTTGGATGAGG
Found at i:1860 original size:30 final size:29
Alignment explanation
Indices: 1773--1886 Score: 133
Period size: 30 Copynumber: 4.0 Consensus size: 29
1763 GGTAGGCGTC
* * *
1773 GGGGCCGGAGATGGAGTTGGCTTAGGGAA
1 GGGGCCGGAGATGGGGTGGGCTTAGGGTA
*
1802 GGGGCC-G-GATGGGCTGGGCTTAGGGTA
1 GGGGCCGGAGATGGGGTGGGCTTAGGGTA
* *
1829 GGGGTCGGAGATGGGGTTGGCTTAGGGGTA
1 GGGGCCGGAGATGGGGTGGGCTTA-GGGTA
* *
1859 GGGGCCGGAGATGAGGTGGGCTTTGGGT
1 GGGGCCGGAGATGGGGTGGGCTTAGGGT
1887 CGGAGAAGGG
Statistics
Matches: 71, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
27 21 0.30
28 2 0.03
29 23 0.32
30 25 0.35
ACGTcount: A:0.14, C:0.11, G:0.55, T:0.20
Consensus pattern (29 bp):
GGGGCCGGAGATGGGGTGGGCTTAGGGTA
Found at i:3684 original size:30 final size:31
Alignment explanation
Indices: 3650--3711 Score: 81
Period size: 30 Copynumber: 2.0 Consensus size: 31
3640 ATATATATAT
*
3650 ATATTATAAAAAAAATTGAGA-ATCAAATTA
1 ATATTATAAAAAAAATTCAGAGATCAAATTA
* * *
3680 ATATTTTATATAAAATTCAGAGATCAAATTA
1 ATATTATAAAAAAAATTCAGAGATCAAATTA
3711 A
1 A
3712 AAATTAACTC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
30 17 0.63
31 10 0.37
ACGTcount: A:0.55, C:0.05, G:0.06, T:0.34
Consensus pattern (31 bp):
ATATTATAAAAAAAATTCAGAGATCAAATTA
Found at i:12168 original size:130 final size:130
Alignment explanation
Indices: 12027--12274 Score: 408
Period size: 130 Copynumber: 1.9 Consensus size: 130
12017 TATTTATATA
*
12027 ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAATTAGGATCTGACATGTG
1 ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTG
* * *
12092 TTAGCACATGATCATGACACGTGTCATTAGTGACACGTGTTACCA-CCTAATTATTTATATATGC
66 TTAACACATGATCATGACACGTGTCATTAGTGACACATGTCA-CATCCTAATTATTTATATATGC
12156 T
130 T
12157 ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTG
1 ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTG
* * * *
12222 TTAACACATGATCATGATATGTGTTATTGGTGACACATGTCACATCCTAATTA
66 TTAACACATGATCATGACACGTGTCATTAGTGACACATGTCACATCCTAATTA
12275 GAAGAAAATT
Statistics
Matches: 109, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
129 2 0.02
130 107 0.98
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37
Consensus pattern (130 bp):
ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTG
TTAACACATGATCATGACACGTGTCATTAGTGACACATGTCACATCCTAATTATTTATATATGCT
Found at i:12305 original size:130 final size:129
Alignment explanation
Indices: 12041--12305 Score: 293
Period size: 130 Copynumber: 2.0 Consensus size: 129
12031 ATTTGGTCCT
* *
12041 AAATTAAATAAAATTTAATAAATTAATCATTTAATTAGGATCTGACATGTGTTAGCACATGATCA
1 AAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTGTTAACACATGATCA
* * *** * * **** *
12106 TGACACGTGTCATTAGTGACACGTGTTACCACCTAATTATTTATATATGCTATCAATTTGGTCCT
66 TGACACGTGTCATTAGTGACACATGTCACCACCTAATTAAGAAAATAAGCTATCAAAGAAGT-CA
12171 AAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTGTTAACACATGATCA
1 AAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTGTTAACACATGATCA
* * * * *
12236 TGATATGTGTTATTGGTGACACATGTCA-CATCCTAATTAGAAGAAAATTAAGTTA-CAAAGAAG
66 TGACACGTGTCATTAGTGACACATGTCACCA-CCTAATT--AAGAAAA-TAAGCTATCAAAGAAG
12299 T-A
127 TCA
12301 AAATT
1 AAATT
12306 TGGGTCTTGG
Statistics
Matches: 112, Mismatches: 19, Indels: 8
0.81 0.14 0.06
Matches are distributed among these distances:
129 2 0.02
130 97 0.87
132 8 0.07
133 5 0.04
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (129 bp):
AAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTGTTAACACATGATCA
TGACACGTGTCATTAGTGACACATGTCACCACCTAATTAAGAAAATAAGCTATCAAAGAAGTCA
Found at i:12633 original size:28 final size:27
Alignment explanation
Indices: 12602--12664 Score: 63
Period size: 28 Copynumber: 2.3 Consensus size: 27
12592 AGTTGATACA
*
12602 ATATTTTAAAAAAATAAATTTAAGATTT
1 ATATTTT-AAAAAATAAATTTAAGAATT
** * *
12630 ATATATTTTTAAACTAAATTTAATAATT
1 ATAT-TTTAAAAAATAAATTTAAGAATT
12658 ATATTTT
1 ATATTTT
12665 TCATATTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
27 3 0.10
28 23 0.79
29 3 0.10
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.49
Consensus pattern (27 bp):
ATATTTTAAAAAATAAATTTAAGAATT
Found at i:12765 original size:16 final size:18
Alignment explanation
Indices: 12744--12777 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
12734 ATTTCTTATT
12744 AAAAATA-AAAT-ATTCA
1 AAAAATATAAATGATTCA
12760 AAAAATATAAATGATTCA
1 AAAAATATAAATGATTCA
12778 TACATTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 4 0.25
18 5 0.31
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.26
Consensus pattern (18 bp):
AAAAATATAAATGATTCA
Found at i:12958 original size:35 final size:35
Alignment explanation
Indices: 12909--12994 Score: 100
Period size: 35 Copynumber: 2.5 Consensus size: 35
12899 ATTGAAGTAT
** * *
12909 TTTAGAATTTAATTGAAGTATTTTAGAACTTAGGG
1 TTTAGAATAAAATTGAAGTACTTTAGAAATTAGGG
* * *
12944 TTTAGAATAAAATTGAATTACTTTGGAAATTGGGG
1 TTTAGAATAAAATTGAAGTACTTTAGAAATTAGGG
*
12979 TTTAGAATGAAATTGA
1 TTTAGAATAAAATTGA
12995 TGATTGTTTT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 43 1.00
ACGTcount: A:0.37, C:0.02, G:0.21, T:0.40
Consensus pattern (35 bp):
TTTAGAATAAAATTGAAGTACTTTAGAAATTAGGG
Found at i:15080 original size:2 final size:2
Alignment explanation
Indices: 15073--15118 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
15063 CGAAAGAAGA
15073 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
15115 TC TC
1 TC TC
15119 GTAGGGTTCC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:16921 original size:14 final size:15
Alignment explanation
Indices: 16902--16930 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
16892 AACGTATTTC
16902 TTACGTTT-ATGTTT
1 TTACGTTTGATGTTT
16916 TTACGTTTGATGTTT
1 TTACGTTTGATGTTT
16931 AATTGGGTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.14, C:0.07, G:0.17, T:0.62
Consensus pattern (15 bp):
TTACGTTTGATGTTT
Found at i:27817 original size:2 final size:2
Alignment explanation
Indices: 27799--27859 Score: 79
Period size: 2 Copynumber: 31.0 Consensus size: 2
27789 CTGAAGGTAT
* * * *
27799 TC TC TC CC TC TC CC TC TC TC TC TC CC T- TC CC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
27840 TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC
27860 CTTGTACATA
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
1 1 0.02
2 49 0.98
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (2 bp):
TC
Found at i:30244 original size:16 final size:18
Alignment explanation
Indices: 30213--30246 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
30203 GCAAACTGAA
30213 ATTTTCAAATTATTTTAT
1 ATTTTCAAATTATTTTAT
30231 ATTTT-AAA-TATTTTAT
1 ATTTTCAAATTATTTTAT
30247 TTATAATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 3 0.19
18 5 0.31
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (18 bp):
ATTTTCAAATTATTTTAT
Found at i:35134 original size:60 final size:59
Alignment explanation
Indices: 35002--35139 Score: 161
Period size: 60 Copynumber: 2.3 Consensus size: 59
34992 AACATAATGA
* * *
35002 ATAGTCAAGTGACCATTTTATAAATTTTAATAGTCGAGGGACCCAACAAAGTAACTCCCT
1 ATAGTC-AGGGACCATTTTATAAATTTTAATAGTCGAAGGACCCAACAAAGCAACTCCCT
* * * * *
35062 ATAGTCAGGGGACCATTTTATAACTTTTAATAGTCTAAGGACTCAACAAAGCAA-TATCTT
1 ATAGTCA-GGGACCATTTTATAAATTTTAATAGTCGAAGGACCCAACAAAGCAACT-CCCT
35122 ATAGTCGAGGGACCATTT
1 ATAGTC-AGGGACCATTT
35140 GTGTACTTTA
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
59 2 0.03
60 64 0.96
61 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.30
Consensus pattern (59 bp):
ATAGTCAGGGACCATTTTATAAATTTTAATAGTCGAAGGACCCAACAAAGCAACTCCCT
Found at i:35148 original size:60 final size:60
Alignment explanation
Indices: 35002--35115 Score: 165
Period size: 60 Copynumber: 1.9 Consensus size: 60
34992 AACATAATGA
* * * * *
35002 ATAGTCAAGTGACCATTTTATAAATTTTAATAGTCGAGGGACCCAACAAAGTAACTCCCT
1 ATAGTCAGGGGACCATTTTATAACTTTTAATAGTCGAAGGACCCAACAAAGCAACTCCCT
* *
35062 ATAGTCAGGGGACCATTTTATAACTTTTAATAGTCTAAGGACTCAACAAAGCAA
1 ATAGTCAGGGGACCATTTTATAACTTTTAATAGTCGAAGGACCCAACAAAGCAA
35116 TATCTTATAG
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
60 47 1.00
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28
Consensus pattern (60 bp):
ATAGTCAGGGGACCATTTTATAACTTTTAATAGTCGAAGGACCCAACAAAGCAACTCCCT
Found at i:35509 original size:2 final size:2
Alignment explanation
Indices: 35459--35490 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
35449 ATTTCATACC
35459 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
35491 TATTATTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:36705 original size:2 final size:2
Alignment explanation
Indices: 36698--36728 Score: 53
Period size: 2 Copynumber: 15.0 Consensus size: 2
36688 ACATAGTTAC
36698 AT AT AT AT AT AT AT AT AT AT AT AT AT CAT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT
36729 GTAGCTAGCA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 26 0.93
3 2 0.07
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:37598 original size:25 final size:25
Alignment explanation
Indices: 37539--37590 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
37529 TTATATATAT
*
37539 AAATAATAATGTTTAATTACGATTC
1 AAATAATAATCTTTAATTACGATTC
*
37564 AAATAATAATCTTTAATTAGGATTC
1 AAATAATAATCTTTAATTACGATTC
37589 AA
1 AA
37591 GTGGTAATGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (25 bp):
AAATAATAATCTTTAATTACGATTC
Found at i:42356 original size:16 final size:16
Alignment explanation
Indices: 42331--42388 Score: 80
Period size: 16 Copynumber: 3.6 Consensus size: 16
42321 TGAAGAATTA
*
42331 GCAAAGTTGAAAGTTG
1 GCAAAATTGAAAGTTG
*
42347 GCAAAATTGAAAGTTA
1 GCAAAATTGAAAGTTG
*
42363 ACAAAATTGAAAGTTG
1 GCAAAATTGAAAGTTG
*
42379 GCAAAGTTGA
1 GCAAAATTGA
42389 CATATTTGGT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.45, C:0.07, G:0.24, T:0.24
Consensus pattern (16 bp):
GCAAAATTGAAAGTTG
Found at i:54351 original size:59 final size:60
Alignment explanation
Indices: 54259--54395 Score: 161
Period size: 60 Copynumber: 2.3 Consensus size: 60
54249 TAAAGCACAC
* *
54259 AAATGGTCCCTCGACTATAGGATATTACTTTGTTGAGTC-CCCAACTACTAAAAGTTACA
1 AAATGGTCCCCCGACTATAGGATATTACTTTGTTGAATCTCCCAACTACTAAAAGTTACA
* ** * * *
54318 AAATGGTCCCCCGACTATAGAGA-GTTGTTTTGTTGAATCTCTCGACTATTAAAAGTTACA
1 AAATGGTCCCCCGACTATAG-GATATTACTTTGTTGAATCTCCCAACTACTAAAAGTTACA
* *
54378 AAATAGTCACCCGACTAT
1 AAATGGTCCCCCGACTAT
54396 TCATTATGTT
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
59 31 0.47
60 35 0.53
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.31
Consensus pattern (60 bp):
AAATGGTCCCCCGACTATAGGATATTACTTTGTTGAATCTCCCAACTACTAAAAGTTACA
Found at i:54719 original size:60 final size:61
Alignment explanation
Indices: 54594--54731 Score: 149
Period size: 60 Copynumber: 2.3 Consensus size: 61
54584 AACATAATGA
* * * *
54594 ATAGTCA-AATGACCATTTTGTAAATTTTAATAGTCGAGGGACCCAACAAAGCAACTCCCTT
1 ATAGTCAGAA-GACCATTTTATAAATTTTAATAGTCGAAGCACCCAACAAAGCAACTACCTT
* * * * *
54655 -TAGTCAGAAGACCATTTTATAACTTTTAATAGTCTAAGCACTCAACAAAGTAA-TATCTT
1 ATAGTCAGAAGACCATTTTATAAATTTTAATAGTCGAAGCACCCAACAAAGCAACTACCTT
54714 ATAGTC-GAGAGACCATTT
1 ATAGTCAGA-AGACCATTT
54732 GTGTACTTTA
Statistics
Matches: 65, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
59 6 0.09
60 57 0.88
61 2 0.03
ACGTcount: A:0.37, C:0.19, G:0.14, T:0.30
Consensus pattern (61 bp):
ATAGTCAGAAGACCATTTTATAAATTTTAATAGTCGAAGCACCCAACAAAGCAACTACCTT
Found at i:56914 original size:34 final size:35
Alignment explanation
Indices: 56852--56917 Score: 107
Period size: 34 Copynumber: 1.9 Consensus size: 35
56842 GCCACCAAAA
56852 GCCATCTAGAAGCACATGCAATTGTCAACAATGCT
1 GCCATCTAGAAGCACATGCAATTGTCAACAATGCT
* *
56887 GCCATCTAGAAGC-CATGCATTTTTCAACAAT
1 GCCATCTAGAAGCACATGCAATTGTCAACAAT
56918 CTCCCACTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 16 0.55
35 13 0.45
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (35 bp):
GCCATCTAGAAGCACATGCAATTGTCAACAATGCT
Found at i:63938 original size:2 final size:2
Alignment explanation
Indices: 63931--63963 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
63921 TTAAATGGAT
63931 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
63964 TAATTAATCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:75728 original size:20 final size:20
Alignment explanation
Indices: 75705--75924 Score: 269
Period size: 20 Copynumber: 10.8 Consensus size: 20
75695 CTCAGTTTCC
75705 AAAATCGCAACGTGAATAGT
1 AAAATCGCAACGTGAATAGT
* * *
75725 AAAATTCTCAAAGTGAATAAT
1 AAAA-TCGCAACGTGAATAGT
75746 AAAATCGCAACGTGAATAGT
1 AAAATCGCAACGTGAATAGT
* * *
75766 AAAATTCTCAAAGTGAATAAT
1 AAAA-TCGCAACGTGAATAGT
75787 AAAATCGCAACGTGAATAGT
1 AAAATCGCAACGTGAATAGT
* * *
75807 AAAATTCTCAAAGTGAATAAT
1 AAAA-TCGCAACGTGAATAGT
75828 AAAATCGCAACGTGAATAGT
1 AAAATCGCAACGTGAATAGT
75848 AAAATCGCAACGTGAATAGT
1 AAAATCGCAACGTGAATAGT
* * *
75868 AAAATCGCAACGCGAATTGG
1 AAAATCGCAACGTGAATAGT
* * *
75888 AAAATCGCAACGAGAATTGA
1 AAAATCGCAACGTGAATAGT
*
75908 AAAATCGCAACGCGAAT
1 AAAATCGCAACGTGAAT
75925 TTAGAAAATC
Statistics
Matches: 173, Mismatches: 24, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
20 122 0.71
21 51 0.29
ACGTcount: A:0.47, C:0.15, G:0.17, T:0.21
Consensus pattern (20 bp):
AAAATCGCAACGTGAATAGT
Found at i:75762 original size:41 final size:41
Alignment explanation
Indices: 75705--75884 Score: 317
Period size: 41 Copynumber: 4.4 Consensus size: 41
75695 CTCAGTTTCC
75705 AAAATCGCAACGTGAATAGTAAAATTCTCAAAGTGAATAAT
1 AAAATCGCAACGTGAATAGTAAAATTCTCAAAGTGAATAAT
75746 AAAATCGCAACGTGAATAGTAAAATTCTCAAAGTGAATAAT
1 AAAATCGCAACGTGAATAGTAAAATTCTCAAAGTGAATAAT
75787 AAAATCGCAACGTGAATAGTAAAATTCTCAAAGTGAATAAT
1 AAAATCGCAACGTGAATAGTAAAATTCTCAAAGTGAATAAT
* * *
75828 AAAATCGCAACGTGAATAGTAAAA-TCGCAACGTGAATAGT
1 AAAATCGCAACGTGAATAGTAAAATTCTCAAAGTGAATAAT
*
75868 AAAATCGCAACGCGAAT
1 AAAATCGCAACGTGAAT
75885 TGGAAAATCG
Statistics
Matches: 135, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
40 29 0.21
41 106 0.79
ACGTcount: A:0.48, C:0.14, G:0.16, T:0.22
Consensus pattern (41 bp):
AAAATCGCAACGTGAATAGTAAAATTCTCAAAGTGAATAAT
Found at i:75925 original size:40 final size:40
Alignment explanation
Indices: 75705--75934 Score: 151
Period size: 41 Copynumber: 5.7 Consensus size: 40
75695 CTCAGTTTCC
* * * * * *
75705 AAAATCGCAACGTGAATAGTAAAATTCTCAAAGTGAATA-A
1 AAAATCGCAACGCGAATTGGAAAA-TCGCAACGAGAATAGA
* * * * * *
75745 TAAAATCGCAACGTGAATAGTAAAATTCTCAAAGTGAATA-A
1 -AAAATCGCAACGCGAATTGGAAAA-TCGCAACGAGAATAGA
* * * * * *
75786 TAAAATCGCAACGTGAATAGTAAAATTCTCAAAGTGAATA-A
1 -AAAATCGCAACGCGAATTGGAAAA-TCGCAACGAGAATAGA
* * * * *
75827 TAAAATCGCAACGTGAATAGTAAAATCGCAACGTGAATAGT
1 -AAAATCGCAACGCGAATTGGAAAATCGCAACGAGAATAGA
*
75868 AAAATCGCAACGCGAATTGGAAAATCGCAACGAGAATTGA
1 AAAATCGCAACGCGAATTGGAAAATCGCAACGAGAATAGA
*
75908 AAAATCGCAACGCGAATTTAGAAAATC
1 AAAATCGCAACGCGAA-TTGGAAAATC
75935 ACAAAATCGC
Statistics
Matches: 177, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
40 62 0.35
41 115 0.65
ACGTcount: A:0.47, C:0.14, G:0.17, T:0.21
Consensus pattern (40 bp):
AAAATCGCAACGCGAATTGGAAAATCGCAACGAGAATAGA
Found at i:76398 original size:21 final size:21
Alignment explanation
Indices: 76295--76441 Score: 185
Period size: 20 Copynumber: 7.2 Consensus size: 21
76285 ATTCGTTGTC
76295 ATTTTACTATTCACGTTGCG-
1 ATTTTACTATTCACGTTGCGA
*
76315 ATTTTACTATTCACGTTGTG-
1 ATTTTACTATTCACGTTGCGA
*
76335 ATTTTACTATTCACATTGCGA
1 ATTTTACTATTCACGTTGCGA
*
76356 TTTTTACTATTCACGTTGCGA
1 ATTTTACTATTCACGTTGCGA
76377 ATTTTACTATTCACGTTGCGA
1 ATTTTACTATTCACGTTGCGA
* ***
76398 ATTTGACT-TTTGTGTTGCGA
1 ATTTTACTATTCACGTTGCGA
* *
76418 ATTTGACTA-TCGCGTTGCGA
1 ATTTTACTATTCACGTTGCGA
76438 ATTT
1 ATTT
76442 GACTTCTGTG
Statistics
Matches: 113, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
20 67 0.59
21 46 0.41
ACGTcount: A:0.21, C:0.17, G:0.16, T:0.46
Consensus pattern (21 bp):
ATTTTACTATTCACGTTGCGA
Found at i:76416 original size:20 final size:20
Alignment explanation
Indices: 76391--76457 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
76381 TACTATTCAC
76391 GTTGCGAATTTGACTTTTGT
1 GTTGCGAATTTGACTTTTGT
* * *
76411 GTTGCGAATTTGACTATCGC
1 GTTGCGAATTTGACTTTTGT
*
76431 GTTGCGAATTTGACTTCTGT
1 GTTGCGAATTTGACTTTTGT
76451 GTTGCGA
1 GTTGCGA
76458 TTTACAAATT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.16, C:0.15, G:0.27, T:0.42
Consensus pattern (20 bp):
GTTGCGAATTTGACTTTTGT
Found at i:76445 original size:40 final size:41
Alignment explanation
Indices: 76370--76457 Score: 142
Period size: 40 Copynumber: 2.2 Consensus size: 41
76360 TACTATTCAC
* *
76370 GTTGCGAATTTTACTATTCACGTTGCGAATTTGACTTTTGT
1 GTTGCGAATTTGACTATTCACGTTGCGAATTTGACTTCTGT
*
76411 GTTGCGAATTTGACTA-TCGCGTTGCGAATTTGACTTCTGT
1 GTTGCGAATTTGACTATTCACGTTGCGAATTTGACTTCTGT
76451 GTTGCGA
1 GTTGCGA
76458 TTTACAAATT
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
40 29 0.66
41 15 0.34
ACGTcount: A:0.18, C:0.16, G:0.24, T:0.42
Consensus pattern (41 bp):
GTTGCGAATTTGACTATTCACGTTGCGAATTTGACTTCTGT
Found at i:76495 original size:20 final size:20
Alignment explanation
Indices: 76451--76497 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
76441 TGACTTCTGT
*
76451 GTTGCGATTTACAAATTCGT
1 GTTGCGATTTACAAATTCGC
* *
76471 ATTGCGATTTACAGATTCGC
1 GTTGCGATTTACAAATTCGC
76491 GTTGCGA
1 GTTGCGA
76498 ATTTGGAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.36
Consensus pattern (20 bp):
GTTGCGATTTACAAATTCGC
Found at i:76817 original size:19 final size:20
Alignment explanation
Indices: 76793--76831 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
76783 TGTTTGCCTC
76793 TTAATG-GAACCATTCAGCG
1 TTAATGTGAACCATTCAGCG
*
76812 TTAATGTTGAACCGTTCAGC
1 TTAATG-TGAACCATTCAGC
76832 ATTCAGCGCG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
21 11 0.65
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.31
Consensus pattern (20 bp):
TTAATGTGAACCATTCAGCG
Found at i:81071 original size:13 final size:13
Alignment explanation
Indices: 81036--81062 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
81026 AAATAGAGAA
81036 TAAGAGAGAACTC
1 TAAGAGAGAACTC
81049 TAAGAGAGAACTC
1 TAAGAGAGAACTC
81062 T
1 T
81063 TTGAGAGAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.15, G:0.22, T:0.19
Consensus pattern (13 bp):
TAAGAGAGAACTC
Found at i:81103 original size:2 final size:2
Alignment explanation
Indices: 81098--81127 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
81088 GCACTTTTTC
*
81098 AT AT AT CT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81128 CATCATTGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:90543 original size:21 final size:21
Alignment explanation
Indices: 90517--90570 Score: 108
Period size: 21 Copynumber: 2.6 Consensus size: 21
90507 AGCTGATAGT
90517 GTCATTTGTACTGTTATGTGG
1 GTCATTTGTACTGTTATGTGG
90538 GTCATTTGTACTGTTATGTGG
1 GTCATTTGTACTGTTATGTGG
90559 GTCATTTGTACT
1 GTCATTTGTACT
90571 AATATATGAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.15, C:0.11, G:0.26, T:0.48
Consensus pattern (21 bp):
GTCATTTGTACTGTTATGTGG
Found at i:96644 original size:32 final size:32
Alignment explanation
Indices: 96597--96657 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
96587 CATAAATAGT
96597 TCATGAAACGTGATTTAATTTATATTGAACAC
1 TCATGAAACGTGATTTAATTTATATTGAACAC
* * *
96629 TCATTAAATGTGATTTAATTTATGTTGAA
1 TCATGAAACGTGATTTAATTTATATTGAA
96658 GTGGCTACTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.36, C:0.08, G:0.13, T:0.43
Consensus pattern (32 bp):
TCATGAAACGTGATTTAATTTATATTGAACAC
Found at i:101367 original size:217 final size:218
Alignment explanation
Indices: 100978--101404 Score: 766
Period size: 217 Copynumber: 2.0 Consensus size: 218
100968 GCGGACAGGT
*
100978 GTGTCTATTTCCACCTGCGATCAATTTAGGTAAACTTTATAGCATGAAAAACAGAAGTAACTGTT
1 GTGTCTATTTCCACCTGCGATCAATTTAGGTAAAATTTATAGCATGAAAAACAGAAGTAACTGTT
*
101043 AAGTTTTATTTTAGGCAGAAAGTTCTTAAATTGGGTTATTTAACATGGTTAAATCATAATGTTAC
66 AAGTTTTATTTTAGGCAGAAAGTTCTTAAATTGAGTTATTTAACATGGTTAAATCATAATGTTAC
101108 AGATTCCTAACTGTTTTAGTGCTGGTATCTCTGTCAAATATACAATTTGAAATCACCTAGTCATA
131 AGATTCCTAACTGTTTTAGTGCTGGTATCTCTGTCAAATATACAATTTGAAATCACCTAGTCATA
101173 ATTCTATAACAGAATGCCGGCAG
196 ATTCTATAACAGAATGCCGGCAG
* *
101196 GTGTCT-TTTCCACCTGCGATCACTTTGGGTAAAATTTATAGCATGAAAAACAGAAGTAACTGTT
1 GTGTCTATTTCCACCTGCGATCAATTTAGGTAAAATTTATAGCATGAAAAACAGAAGTAACTGTT
* *
101260 AAGTTTTATTTTAGGCAGAAAGTTCTTAAATTTATTTATTTAACATGGTTAAATCATAATGTTAC
66 AAGTTTTATTTTAGGCAGAAAGTTCTTAAATTGAGTTATTTAACATGGTTAAATCATAATGTTAC
* **
101325 AGATTCCTAACTGTTTTAGTGCTGGTATTTCTGTTGAATATACAATTTGAAATCACCTAGTCATA
131 AGATTCCTAACTGTTTTAGTGCTGGTATCTCTGTCAAATATACAATTTGAAATCACCTAGTCATA
101390 ATTCTATAACAGAAT
196 ATTCTATAACAGAAT
101405 CAGTATGCTT
Statistics
Matches: 200, Mismatches: 9, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
217 194 0.97
218 6 0.03
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (218 bp):
GTGTCTATTTCCACCTGCGATCAATTTAGGTAAAATTTATAGCATGAAAAACAGAAGTAACTGTT
AAGTTTTATTTTAGGCAGAAAGTTCTTAAATTGAGTTATTTAACATGGTTAAATCATAATGTTAC
AGATTCCTAACTGTTTTAGTGCTGGTATCTCTGTCAAATATACAATTTGAAATCACCTAGTCATA
ATTCTATAACAGAATGCCGGCAG
Found at i:124936 original size:21 final size:21
Alignment explanation
Indices: 124912--124955 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
124902 CGGAAATTTA
**
124912 AAAAATATTAATATTTTAGAT
1 AAAAATAAAAATATTTTAGAT
124933 AAAAATAAAAATATTTTAGAT
1 AAAAATAAAAATATTTTAGAT
124954 AA
1 AA
124956 TATTTTACCG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (21 bp):
AAAAATAAAAATATTTTAGAT
Found at i:125556 original size:3 final size:3
Alignment explanation
Indices: 125548--125582 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
125538 TTGATTAAGA
125548 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
125583 ATATATATAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:134332 original size:22 final size:22
Alignment explanation
Indices: 134306--134385 Score: 92
Period size: 22 Copynumber: 3.7 Consensus size: 22
134296 ACAAGACTCT
134306 TAAACACAATTAACAGAGCAGA
1 TAAACACAATTAACAGAGCAGA
** * *
134328 TAAACAC-A-GGACAGTTGGAGA
1 TAAACACAATTAACAG-AGCAGA
*
134349 TAAACACAATTAGCAGAGCAGA
1 TAAACACAATTAACAGAGCAGA
134371 TAAACACAATTAACA
1 TAAACACAATTAACA
134386 TGTGAATACA
Statistics
Matches: 45, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
20 4 0.09
21 12 0.27
22 26 0.58
23 3 0.07
ACGTcount: A:0.51, C:0.17, G:0.16, T:0.15
Consensus pattern (22 bp):
TAAACACAATTAACAGAGCAGA
Found at i:136631 original size:33 final size:33
Alignment explanation
Indices: 136594--136660 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
136584 GTAATAAGAG
*
136594 AAGGACAGAAAGCTCGAAACGAGTAAGAACGCA
1 AAGGACAGAAAGCTCAAAACGAGTAAGAACGCA
136627 AAGGACAGAAAGCTCAAAACGAGTAAGAACGCA
1 AAGGACAGAAAGCTCAAAACGAGTAAGAACGCA
136660 A
1 A
136661 CGCACCGCTG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.51, C:0.18, G:0.25, T:0.06
Consensus pattern (33 bp):
AAGGACAGAAAGCTCAAAACGAGTAAGAACGCA
Found at i:137201 original size:3 final size:3
Alignment explanation
Indices: 137195--137224 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
137185 GATGATGATG
137195 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
137225 GGTAAATAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
CAT
Found at i:151933 original size:21 final size:21
Alignment explanation
Indices: 151909--151967 Score: 61
Period size: 21 Copynumber: 3.0 Consensus size: 21
151899 ATCCAATGTA
151909 ATATTATAATTATAACAATAT
1 ATATTATAATTATAACAATAT
* **
151930 ATATTTTAATTAT--CGCTAT
1 ATATTATAATTATAACAATAT
*
151949 ATA-TATAATTACAACAATA
1 ATATTATAATTATAACAATA
151968 ACTCTTTTTA
Statistics
Matches: 29, Mismatches: 7, Indels: 5
0.71 0.17 0.12
Matches are distributed among these distances:
18 7 0.24
19 7 0.24
20 3 0.10
21 12 0.41
ACGTcount: A:0.47, C:0.08, G:0.02, T:0.42
Consensus pattern (21 bp):
ATATTATAATTATAACAATAT
Found at i:152433 original size:68 final size:68
Alignment explanation
Indices: 152320--152525 Score: 342
Period size: 68 Copynumber: 3.0 Consensus size: 68
152310 TAGGAATTTT
* * *
152320 TTTAGGGTAAACTACATATTTGGTCGCTTATATATTATCTAATTTATGTTTTAGTCATTCGATTA
1 TTTAGGGTAAACTACCTATTTGGTCACTTATATATTATCTAATTTATGTTTTGGTCATTCGATTA
152385 TTA
66 TTA
* *
152388 TTTAGGGTAAACTACCTATTTGGTCACTTATATATTATCTTATTTATGCTTTGGTCACTT-GATT
1 TTTAGGGTAAACTACCTATTTGGTCACTTATATATTATCTAATTTATGTTTTGGTCA-TTCGATT
152452 ATTA
65 ATTA
*
152456 TTTAGGGTAAACTACCTATTTGGTCACTTATATATTATCTAATTTATGTTTTGGTCACTCGATTA
1 TTTAGGGTAAACTACCTATTTGGTCACTTATATATTATCTAATTTATGTTTTGGTCATTCGATTA
152521 TTA
66 TTA
152524 TT
1 TT
152526 ATTTTTCAAA
Statistics
Matches: 128, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
67 1 0.01
68 125 0.98
69 2 0.02
ACGTcount: A:0.26, C:0.12, G:0.13, T:0.49
Consensus pattern (68 bp):
TTTAGGGTAAACTACCTATTTGGTCACTTATATATTATCTAATTTATGTTTTGGTCATTCGATTA
TTA
Found at i:152444 original size:31 final size:31
Alignment explanation
Indices: 152406--152514 Score: 87
Period size: 31 Copynumber: 3.3 Consensus size: 31
152396 AAACTACCTA
152406 TTTGGTCACTTATATATTATCTTATTTATGC
1 TTTGGTCACTTATATATTATCTTATTTATGC
** *
152437 TTTGGTCACTTGAT-TATTAT-TTAGGGTAAACTACC
1 TTTGGTCACTT-ATATATTATCTTA---TTTA-T-GC
* *
152472 TATTTGGTCACTTATATATTATCTAATTTATGT
1 --TTTGGTCACTTATATATTATCTTATTTATGC
152505 TTTGGTCACT
1 TTTGGTCACT
152515 CGATTATTAT
Statistics
Matches: 60, Mismatches: 8, Indels: 20
0.68 0.09 0.23
Matches are distributed among these distances:
30 3 0.05
31 27 0.45
32 2 0.03
33 2 0.03
34 2 0.03
35 3 0.05
36 2 0.03
37 17 0.28
38 2 0.03
ACGTcount: A:0.24, C:0.13, G:0.13, T:0.50
Consensus pattern (31 bp):
TTTGGTCACTTATATATTATCTTATTTATGC
Found at i:152492 original size:37 final size:37
Alignment explanation
Indices: 152383--152493 Score: 121
Period size: 37 Copynumber: 3.2 Consensus size: 37
152373 GTCATTCGAT
152383 TATTATTTAGGGTAAACTACCTATTTGGTCACTTATA
1 TATTATTTAGGGTAAACTACCTATTTGGTCACTTATA
** *
152420 TATTATCTTA---TTTA-T-GC--TTTGGTCACTTGAT-
1 TATTAT-TTAGGGTAAACTACCTATTTGGTCACTT-ATA
152451 TATTATTTAGGGTAAACTACCTATTTGGTCACTTATA
1 TATTATTTAGGGTAAACTACCTATTTGGTCACTTATA
152488 TATTAT
1 TATTAT
152494 CTAATTTATG
Statistics
Matches: 58, Mismatches: 6, Indels: 20
0.69 0.07 0.24
Matches are distributed among these distances:
30 3 0.05
31 17 0.29
32 2 0.03
33 3 0.05
34 2 0.03
35 3 0.05
36 2 0.03
37 23 0.40
38 3 0.05
ACGTcount: A:0.27, C:0.13, G:0.13, T:0.48
Consensus pattern (37 bp):
TATTATTTAGGGTAAACTACCTATTTGGTCACTTATA
Found at i:152645 original size:32 final size:32
Alignment explanation
Indices: 152609--152671 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
152599 GCTAACATGG
*
152609 CATTTTTTAATTATGTTTGGATGTTGGACTAA
1 CATTTTTTAATTATGTTTGGATGTTAGACTAA
152641 CATTTTTTAATTATGTTTGGATGTTAGACTA
1 CATTTTTTAATTATGTTTGGATGTTAGACTA
152672 TGTAATTCGA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.25, C:0.06, G:0.17, T:0.51
Consensus pattern (32 bp):
CATTTTTTAATTATGTTTGGATGTTAGACTAA
Done.