Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005712.1 Hibiscus syriacus cultivar Beakdansim tig00013353_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73161

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4853--5002
45
3.3
45
87
0
210
37
8
20
34
1.83
4959--5034
22
3.5
22
67
12
57
36
3
19
39
1.71
4965--5029
14
4.4
15
74
14
55
33
4
20
41
1.72
4843--5033
45
4.2
44
82
3
148
36
7
19
35
1.81
11272--11423
45
3.4
45
85
0
205
38
9
19
32
1.84
11551--11605
23
2.4
23
81
0
65
14
20
29
36
1.92
11743--11828
2
43.0
2
100
0
172
50
0
0
50
1.00
15075--15153
39
2.0
39
97
0
149
31
17
18
31
1.95
17631--17682
2
26.0
2
96
0
95
48
0
1
50
1.12
18189--18302
60
1.9
61
83
5
151
35
11
14
39
1.81
22315--22353
15
2.6
15
87
0
60
46
12
12
28
1.79
22502--22554
21
2.5
21
93
0
88
28
28
22
20
1.99
22750--22804
13
4.2
13
75
13
58
49
12
3
34
1.59
22790--22888
33
3.0
33
94
1
164
45
15
7
32
1.73
22883--22922
21
1.9
21
94
0
71
47
7
15
30
1.72
31212--31243
11
2.9
11
95
0
55
12
0
3
84
0.74
32982--33048
26
2.6
24
80
13
80
65
4
19
10
1.40
35807--35838
16
2.0
16
93
0
55
40
0
15
43
1.47
39788--39842
16
3.4
16
82
14
60
60
3
0
36
1.15
39803--39833
11
2.7
12
90
10
55
64
0
0
35
0.94
39926--39982
26
2.2
26
90
9
91
45
5
3
45
1.43
39884--40018
62
2.2
62
88
6
204
47
5
2
45
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39941--40131
37
5.0
37
81
10
215
42
7
4
45
1.52
40099--40144
23
2.0
24
86
4
67
39
13
4
43
1.63
40134--40193
2
30.0
2
100
0
120
50
0
0
50
1.00
44835--44889
16
3.4
16
85
14
69
60
1
0
38
1.08
44851--44886
11
3.0
12
88
12
56
63
0
0
36
0.94
44922--45087
35
4.6
34
78
12
116
46
9
2
41
1.48
44928--45345
38
11.0
34
73
19
221
42
9
3
44
1.52
44964--45339
38
9.9
38
77
14
294
42
9
3
44
1.52
44968--45191
75
3.0
74
84
7
276
44
8
3
43
1.50
44928--45353
37
11.1
38
72
16
201
42
9
3
44
1.52
49614--50028
42
9.9
42
85
4
493
36
16
20
26
1.93
49613--50037
126
3.4
125
84
4
545
36
16
20
26
1.93
58042--58087
21
2.2
21
88
0
65
47
19
28
4
1.68
58405--58549
44
3.4
44
80
6
136
28
20
20
31
1.97
58535--58883
85
4.1
85
78
9
246
32
22
16
28
1.96
58535--58922
43
9.1
43
75
7
288
32
22
15
28
1.95
58536--58878
128
2.7
126
79
7
343
32
22
16
28
1.95
58667--58925
85
3.0
85
83
6
301
33
21
14
30
1.93
58535--58922
128
3.0
129
79
5
288
32
22
15
28
1.95
60052--60100
25
2.0
25
84
8
64
24
2
8
65
1.31
63618--63662
23
2.0
23
95
0
81
28
22
28
20
1.98
64096--64137
15
2.8
15
85
0
57
42
16
0
40
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65165--65288
64
1.9
64
82
6
153
22
17
22
37
1.94
69128--69206
37
2.1
37
88
4
115
44
25
15
15
1.85
69644--70290
200
3.3
197
80
5
653
35
21
16
26
1.94
71067--71092
6
4.3
6
100
0
52
15
0
0
84
0.62
71434--71484
12
4.3
12
78
9
52
27
3
1
66
1.20

Tables:   1

The End!